Opened 5 years ago

Closed 5 years ago

Last modified 5 years ago

#4383 closed defect (duplicate)

Toolshed error in "already installed" error message

Reported by: long.han@… Owned by: Greg Couch
Priority: normal Milestone:
Component: Tool Shed Version:
Keywords: Cc: Eric Pettersen, Scooter Morris
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Linux-3.10.0-1127.13.1.el7.x86_64-x86_64-with-glibc2.14
ChimeraX Version: 1.2.dev202102200332 (2021-02-20 03:32:07 UTC)
Description
The Stringdb cannot  be installed on this workstation.

Thanks

Log:
UCSF ChimeraX version: 1.2.dev202102200332 (2021-02-20)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open for-inter.cxs

Log from Thu Mar 18 12:28:19 2021UCSF ChimeraX version: 1.2.dev202102200332
(2021-02-20)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> toolshed show

Downloading bundle ChimeraX_Cytoscape-0.1-py3-none-any.whl  
Successfully installed ChimeraX-Cytoscape-0.1  
Installed ChimeraX-Cytoscape (0.1)  
Downloading bundle ChimeraX_Stringdb-0.1-py3-none-any.whl  
Successfully installed ChimeraX-Stringdb-0.1  
Installed ChimeraX-Stringdb (0.1)  

> open C1_omp.cif

Summary of feedback from opening C1_omp.cif  
---  
warnings | Unknown polymer entity '1' near line 506  
Unknown polymer entity '2' near line 123269  
Unknown polymer entity '3' near line 135295  
Unknown polymer entity '4' near line 141013  
Unknown polymer entity '5' near line 145207  
64 messages similar to the above omitted  
Atom . is not in the residue template for LYS /0T:501  
Atom . is not in the residue template for LYS /0U:501  
Atom . is not in the residue template for LYS /0V:501  
Missing or incomplete entity_poly_seq table. Inferred polymer connectivity.  
  
Chain information for C1_omp.cif #1  
---  
Chain | Description  
0A 0B 0C 0D 0E 0F 0G 0H 0I 0J 0K 0L 0M 0N 0O 0P 0Q 0R 0S 0T 0U 0V 0W 0X 0Y 0Z
1A 1B 1C 1D 1E 1F 1G | ?  
1H 1I 6D | ?  
1J 1K | ?  
1L 1M | ?  
1N | ?  
1O | ?  
1P | ?  
1Q | ?  
1R | ?  
1S | ?  
1T | ?  
1U | ?  
1V 5W 5X 5Y | ?  
1W | ?  
1X | ?  
1Y | ?  
1Z | ?  
2A | ?  
2B | ?  
2C | ?  
2D | ?  
2E | ?  
2P | ?  
2Q 2R | ?  
2S 2U | ?  
2T 2V | ?  
2W 2X | ?  
2Y 2Z | ?  
3A 3B | ?  
3C 3D | ?  
3E | ?  
3F | ?  
3G | ?  
3H | ?  
3I | ?  
3J 3K | ?  
3L | ?  
3M 3N | ?  
3O | ?  
3P 3Q | ?  
3R | ?  
3S 3T | ?  
3U | ?  
3V 3W | ?  
3X 3Y 3Z | ?  
4A 4B | ?  
4C | ?  
4D | ?  
4E | ?  
4F 4G 4H | ?  
4I 4J 4K 4L 4M 4N | ?  
4O | ?  
4P | ?  
4Q 4R 4S | ?  
4T 4U 4V | ?  
4W 4X 4Y 4Z | ?  
5A 5B 5C 5D | ?  
5E 5F 5G 5H | ?  
5I 5J 5K 5L | ?  
5M 5N 5O | ?  
5P 5Q 5R 5S 5T 5U | ?  
5V | ?  
5Z | ?  
6A 6B | ?  
6C | ?  
6E 6F | ?  
6G 6H 6I 6J | ?  
6K 6L | ?  
6M 6N | ?  
  

> rename #1 id #2

> color #2/3M-3Z,4A-4B #2f6eaf

> color #2/4E-4H #c0ece6

> color #2/4I-4P #762670

> color #2/4Q-4S #006f69

> color #2/4T-4V #ea8185

> color #2/4W-4Z,5A-5D #e75f0f

> color #2/5E-5H #8bbb26

> color #2/5I-5L #f1e81d

> color #2/ 5M-5U,5V #f554f4

> color #2/4D #f1912d

> color #2/4C 9a458f

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random' or a keyword  

> color #2/5W-5Y #65c1c5

> color #2/5Z #202876

> color #2/0A-0Z,1A-1G #f0027f

> color #2/1H-1I,6D #23eced

> color #2/1P #14f403

> color #2/1O #dc6e07

> color #2/1N #a651a8

> color #2/1Q #5e61c1

> color #2/1T-1Z,2A-2E #a2512d

> color #2/1J-1K #8bbb26

> color #2/1L-1M #1596d3

> color #2/6A-6C #861a7f

> color #2/6E-6F #eced55

> color #2/6M-6N #18489a

> color #2/6K-6L #e15541

> color #2/6G-6J #1b9c91

> color #2/2S-2V #868bd3

> color #2/3C-3D #c5a322

> color #2/3E #3c99dd

> color #2/3F-3G #efea3b

> color #2/3L #d5161c

> color #2/3J-3K #247235

> color #2/3H,3I #eb1c1a

> color #2/1R-1S #f18209

> hide #1 atoms

> show #1 cartoons

> hide #2 atoms

> show #2 cartoons

> set bgColor white

> material dull

> lighting gentle intensity 0.6 ambientIntensity 0.8 fillIntensity 0.3

> graphics silhouettes false

> preset cylinders

Changed 468515 atom styles  
Preset expands to these ChimeraX commands:

    
    
    show nucleic
    hide protein|solvent|H
    surf hide
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    cartoon
    cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    cartoon style ~(nucleic|strand) x round
    cartoon style (nucleic|strand) x rect
    cartoon style protein modeh tube rad 2 sides 24 thick 0.6
    cartoon style nucleic x round width 1.6 thick 1.6
    nucleotides stubs

  

> cartoon style coil xsection oval thickness 2

> cartoon style strand xsection rectangle width 3

> cartoon style strand xsection rectangle thickness 2

> size pseudobondRadius 0.65

Changed 440 pseudobond radii  

> lighting soft ambientIntensity 0.8 intensity 1.0 multiShadow 512

> save for-inter.cxs

——— End of log from Thu Mar 18 12:28:19 2021 ———

opened ChimeraX session  

> toolshed show

Downloading bundle ChimeraX_Stringdb-0.1-py3-none-any.whl  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.8/site-
packages/chimerax/help_viewer/tool.py", line 369, in <lambda>  
item.finished.connect(lambda *args, **kw: self.download_finished(*args, **kw,
item=item, is_wheel=is_wheel))  
File "/opt/UCSF/ChimeraX-daily/lib/python3.8/site-
packages/chimerax/help_viewer/tool.py", line 410, in download_finished  
self.session.toolshed.install_bundle(filename,  
File "/opt/UCSF/ChimeraX-daily/lib/python3.8/site-
packages/chimerax/core/toolshed/__init__.py", line 898, in install_bundle  
_install_bundle(self, bundle, logger, per_user=per_user, reinstall=reinstall,
session=session, no_deps=no_deps)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.8/site-
packages/chimerax/toolshed_utils/__init__.py", line 219, in _install_bundle  
raise ToolshedInstalledError("bundle %r already installed" % bundle_name)  
chimerax.core.toolshed.ToolshedInstalledError: bundle
'/home/spuser/Downloads/ChimeraX_Stringdb-0.1-py3-none-any.whl' already
installed  
  
chimerax.core.toolshed.ToolshedInstalledError: bundle
'/home/spuser/Downloads/ChimeraX_Stringdb-0.1-py3-none-any.whl' already
installed  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.8/site-
packages/chimerax/toolshed_utils/__init__.py", line 219, in _install_bundle  
raise ToolshedInstalledError("bundle %r already installed" % bundle_name)  
  
See log for complete Python traceback.  
  
Downloading bundle ChimeraX_Stringdb-0.1-py3-none-any.whl  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.8/site-
packages/chimerax/help_viewer/tool.py", line 369, in <lambda>  
item.finished.connect(lambda *args, **kw: self.download_finished(*args, **kw,
item=item, is_wheel=is_wheel))  
File "/opt/UCSF/ChimeraX-daily/lib/python3.8/site-
packages/chimerax/help_viewer/tool.py", line 410, in download_finished  
self.session.toolshed.install_bundle(filename,  
File "/opt/UCSF/ChimeraX-daily/lib/python3.8/site-
packages/chimerax/core/toolshed/__init__.py", line 898, in install_bundle  
_install_bundle(self, bundle, logger, per_user=per_user, reinstall=reinstall,
session=session, no_deps=no_deps)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.8/site-
packages/chimerax/toolshed_utils/__init__.py", line 219, in _install_bundle  
raise ToolshedInstalledError("bundle %r already installed" % bundle_name)  
chimerax.core.toolshed.ToolshedInstalledError: bundle
'/home/spuser/Downloads/ChimeraX_Stringdb-0.1-py3-none-any.whl' already
installed  
  
chimerax.core.toolshed.ToolshedInstalledError: bundle
'/home/spuser/Downloads/ChimeraX_Stringdb-0.1-py3-none-any.whl' already
installed  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.8/site-
packages/chimerax/toolshed_utils/__init__.py", line 219, in _install_bundle  
raise ToolshedInstalledError("bundle %r already installed" % bundle_name)  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 460.32.03
OpenGL renderer: GeForce GTX 1080 Ti/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Supermicro
Model: SYS-7048GR-TR
OS: CentOS Linux 7 Core
Architecture: 64bit ELF
Virutal Machine: none
CPU: 48 Intel(R) Xeon(R) CPU E5-2650 v4 @ 2.20GHz
Cache Size: 30720 KB
Memory:
	              total        used        free      shared  buff/cache   available
	Mem:           377G        145G         94G        386M        137G        230G
	Swap:           19G        486M         19G

Graphics:
	02:00.0 VGA compatible controller [0300]: NVIDIA Corporation GP102 [GeForce GTX 1080 Ti] [10de:1b06] (rev a1)	
	Subsystem: ASUSTeK Computer Inc. Device [1043:85e5]	
	Kernel driver in use: nvidia
Locale: ('en_US', 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.0
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2020.12.5
    cftime: 1.4.1
    chardet: 3.0.4
    ChimeraX-AddCharge: 1.0
    ChimeraX-AddH: 2.1.4
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.11.1
    ChimeraX-AtomicLibrary: 2.0
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.5
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.1
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.1
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.0
    ChimeraX-CommandLine: 1.1.3
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.2.dev202102200332
    ChimeraX-CoreFormats: 1.0
    ChimeraX-coulombic: 1.0.3
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-Cytoscape: 0.1
    ChimeraX-DataFormats: 1.1
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.0
    ChimeraX-Hbonds: 2.1
    ChimeraX-Help: 1.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.0
    ChimeraX-ImageFormats: 1.1
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0
    ChimeraX-Label: 1.0
    ChimeraX-LinuxSupport: 1.0
    ChimeraX-ListInfo: 1.1
    ChimeraX-Log: 1.1.1
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.0.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.0
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 1.1
    ChimeraX-MDcrds: 2.2
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.0
    ChimeraX-mmCIF: 2.2
    ChimeraX-MMTF: 2.0
    ChimeraX-Modeller: 1.0
    ChimeraX-ModelPanel: 1.0.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.0
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0
    ChimeraX-OpenCommand: 1.5
    ChimeraX-PDB: 2.2
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.0.1
    ChimeraX-ReadPbonds: 1.0
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.4
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SeqView: 2.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.0
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.0.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.3
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Stringdb: 0.1
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.0
    ChimeraX-ToolshedUtils: 1.1
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.6.1
    ChimeraX-uniprot: 2.1
    ChimeraX-ViewDockX: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.3
    comtypes: 1.1.7
    cxservices: 1.0
    cycler: 0.10.0
    Cython: 0.29.21
    decorator: 4.4.2
    distlib: 0.3.1
    distro: 1.5.0
    docutils: 0.16
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 2.10.0
    html2text: 2020.1.16
    idna: 2.10
    ihm: 0.17
    imagecodecs: 2020.5.30
    imagesize: 1.2.0
    ipykernel: 5.3.4
    ipython: 7.18.1
    ipython-genutils: 0.2.0
    jedi: 0.17.2
    Jinja2: 2.11.2
    jupyter-client: 6.1.7
    jupyter-core: 4.7.1
    kiwisolver: 1.3.1
    line-profiler: 2.1.2
    lxml: 4.6.2
    lz4: 3.1.0
    MarkupSafe: 1.1.1
    matplotlib: 3.3.2
    msgpack: 1.0.0
    netCDF4: 1.5.4
    networkx: 2.5
    numexpr: 2.7.2
    numpy: 1.19.2
    numpydoc: 1.1.0
    openvr: 1.14.1501
    packaging: 20.9
    ParmEd: 3.2.0
    parso: 0.7.1
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 7.2.0
    pip: 21.0.1
    pkginfo: 1.5.0.1
    prompt-toolkit: 3.0.16
    psutil: 5.7.2
    ptyprocess: 0.7.0
    pycollada: 0.7.1
    pydicom: 2.0.0
    Pygments: 2.7.1
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 2.4.7
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.1
    pytz: 2021.1
    pyzmq: 22.0.3
    qtconsole: 4.7.7
    QtPy: 1.9.0
    RandomWords: 0.3.0
    requests: 2.24.0
    scipy: 1.5.2
    setuptools: 50.3.2
    sfftk-rw: 0.6.7.dev1
    six: 1.15.0
    snowballstemmer: 2.1.0
    sortedcontainers: 2.2.2
    Sphinx: 3.2.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 1.0.3
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.4
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2020.9.3
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.0.5
    urllib3: 1.25.11
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.36.0
    wheel-filename: 1.2.0

Change History (5)

comment:1 by Eric Pettersen, 5 years ago

Cc: Eric Pettersen added
Component: Unassigned → Tool Shed
Owner: set to Greg Couch
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → Toolshed error in "already installed" error message

comment:2 by Eric Pettersen, 5 years ago

Resolution: → duplicate
Status: assigned → closed

Hi Long,

Thanks for reporting this problem. StringDB is already installed in your ChimeraX, but unfortunately the code that reports that has a bug in it, which resulted in the error you saw. So, you can ignore the error. The problem is fixed in the daily build if you want to avoid it in the future.

--Eric

Eric Pettersen
UCSF Computer Graphics Lab

in reply to:  3 ; comment:3 by long.han@…, 5 years ago 

Hi Eric,

Thanks for your promptly response. Yes, the StringDB has installed, but I cannot find the accession to this tool. I cannot find it in the tools-general.

Thanks very much,
Long

-----邮件原件-----
发件人: ChimeraX <ChimeraX-bugs-admin@cgl.ucsf.edu> 
发送时间: 2021年3月18日 12:54
抄送: gregc@cgl.ucsf.edu; Han, Long <long.han@yale.edu>; pett@cgl.ucsf.edu
主题: Re: [ChimeraX] #4383: Toolshed error in "already installed" error message

#4383: Toolshed error in "already installed" error message
---------------------------------+------------------------
          Reporter:  long.han@…  |      Owner:  Greg Couch
              Type:  defect      |     Status:  closed
          Priority:  normal      |  Milestone:
         Component:  Tool Shed   |    Version:
        Resolution:  duplicate   |   Keywords:
        Blocked By:              |   Blocking:
Notify when closed:              |   Platform:  all
           Project:  ChimeraX    |
---------------------------------+------------------------
Changes (by Eric Pettersen):

 * status:  assigned => closed
 * resolution:   => duplicate


Comment:

 Hi Long,
         Thanks for reporting this problem.  StringDB is already installed  in your ChimeraX, but unfortunately the code that reports that has a bug  in it, which resulted in the error you saw.  So, you can ignore the error.
 The problem is fixed in the daily build if you want to avoid it in the  future.

 --Eric

         Eric Pettersen
         UCSF Computer Graphics Lab

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comment:4 by Eric Pettersen, 5 years ago

Cc: Scooter Morris added

Hi Long,

StringDB only installs a command ("stringdb") and unfortunately does not work in any recent version of ChimeraX. We will be contacting the author to see if he can update it.

--Eric

in reply to:  5 ; comment:5 by long.han@…, 5 years ago 

Hi Eric,

Thanks for your help. Yes, it cannot work in command. I am looking forward your update.

Thanks,
Long

-----邮件原件-----
发件人: ChimeraX <ChimeraX-bugs-admin@cgl.ucsf.edu> 
发送时间: 2021年3月18日 13:40
抄送: gregc@cgl.ucsf.edu; Han, Long <long.han@yale.edu>; pett@cgl.ucsf.edu; scooter@cgl.ucsf.edu
主题: Re: [ChimeraX] #4383: Toolshed error in "already installed" error message

#4383: Toolshed error in "already installed" error message
---------------------------------+------------------------
          Reporter:  long.han@…  |      Owner:  Greg Couch
              Type:  defect      |     Status:  closed
          Priority:  normal      |  Milestone:
         Component:  Tool Shed   |    Version:
        Resolution:  duplicate   |   Keywords:
        Blocked By:              |   Blocking:
Notify when closed:              |   Platform:  all
           Project:  ChimeraX    |
---------------------------------+------------------------
Changes (by Eric Pettersen):

 * cc: Scooter Morris (added)


Comment:

 Hi Long,
         StringDB only installs a command ("stringdb") and unfortunately  does not work in any recent version of ChimeraX.  We will be contacting  the author to see if he can update it.

 --Eric

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