The following bug report has been submitted:
Platform: Darwin-19.3.0-x86_64-i386-64bit
ChimeraX Version: 1.1.1 (2020-10-07 08:32:49 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Loaded a very large file of >700 individual 3D particles
Process: ChimeraX [22429]
Path: /Applications/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX
Identifier: ChimeraX
Version: 1.1.1 (1.1.1.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [22429]
User ID: 502
Date/Time: 2021-03-15 14:04:35.713 -0500
OS Version: Mac OS X 10.15.3 (19D76)
Report Version: 12
Anonymous UUID: 1F6B43F7-0CC5-7E30-3750-5B3005F99535
Sleep/Wake UUID: BF65C307-D37C-4005-B51A-A0E20C88DEF0
Time Awake Since Boot: 1400000 seconds
Time Since Wake: 1200000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
abort() called
Application Specific Signatures:
Graphics kernel error: 0xfffffffb
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff63b3a7fa __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff63bf7bc1 pthread_kill + 432
2 libsystem_c.dylib 0x00007fff63a513a2 raise + 26
3 libsystem_platform.dylib 0x00007fff63bec42d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 libsystem_c.dylib 0x00007fff63ac1a1c abort + 120
6 libGPUSupportMercury.dylib 0x00007fff4ce130a6 gpusGenerateCrashLog.cold.1 + 94
7 libGPUSupportMercury.dylib 0x00007fff4ce0a1e7 gpusGenerateCrashLog + 89
8 com.apple.GeForceGLDriver 0x00007fff26f828af 0x7fff26c7e000 + 3164335
9 libGPUSupportMercury.dylib 0x00007fff4ce0b5bc gpusSubmitDataBuffers + 164
10 com.apple.GeForceGLDriver 0x00007fff26f7dd73 0x7fff26c7e000 + 3145075
11 com.apple.GeForceGLDriver 0x00007fff2714f2e6 0x7fff26c7e000 + 5051110
12 com.apple.GeForceGLDriver 0x00007fff26e67972 0x7fff26c7e000 + 2005362
13 com.apple.GeForceGLDriver 0x00007fff26f614f3 0x7fff26c7e000 + 3028211
14 GLEngine 0x00007fff36deadca glDrawElementsInstanced_ACC_GL3Exec + 432
15 _ctypes.cpython-37m-darwin.so 0x0000000114cd7e17 ffi_call_unix64 + 79
16 _ctypes.cpython-37m-darwin.so 0x0000000114cd86a5 ffi_call + 901
17 _ctypes.cpython-37m-darwin.so 0x0000000114cd2f62 _ctypes_callproc + 882
18 _ctypes.cpython-37m-darwin.so 0x0000000114ccc6dc PyCFuncPtr_call + 1196
19 org.python.python 0x00000001096009d8 PyObject_Call + 136
20 org.python.python 0x0000000109653916 slot_tp_call + 198
21 wrapper.cpython-37m-darwin.so 0x0000000115876181 __Pyx_PyObject_Call + 97
22 wrapper.cpython-37m-darwin.so 0x000000011588328d __pyx_pw_17OpenGL_accelerate_7wrapper_7Wrapper_3__call__ + 765
23 latebind.cpython-37m-darwin.so 0x00000001158dffa1 __Pyx_PyObject_Call + 97
24 latebind.cpython-37m-darwin.so 0x00000001158df522 __pyx_pw_17OpenGL_accelerate_8latebind_8LateBind_11__call__ + 306
25 org.python.python 0x00000001096006df _PyObject_FastCallKeywords + 575
26 org.python.python 0x00000001096d5bcd call_function + 765
27 org.python.python 0x00000001096d2817 _PyEval_EvalFrameDefault + 26567
28 org.python.python 0x00000001096d6a2c _PyEval_EvalCodeWithName + 3276
29 org.python.python 0x0000000109600879 _PyFunction_FastCallKeywords + 217
30 org.python.python 0x00000001096d5bd4 call_function + 772
31 org.python.python 0x00000001096d27fa _PyEval_EvalFrameDefault + 26538
32 org.python.python 0x0000000109600d61 function_code_fastcall + 177
33 org.python.python 0x00000001096d5bd4 call_function + 772
34 org.python.python 0x00000001096d27fa _PyEval_EvalFrameDefault + 26538
35 org.python.python 0x00000001096d6a2c _PyEval_EvalCodeWithName + 3276
36 org.python.python 0x0000000109600879 _PyFunction_FastCallKeywords + 217
37 org.python.python 0x00000001096d5bd4 call_function + 772
38 org.python.python 0x00000001096cc5c4 _PyEval_EvalFrameDefault + 1396
39 org.python.python 0x0000000109600d61 function_code_fastcall + 177
40 org.python.python 0x00000001096d5bd4 call_function + 772
41 org.python.python 0x00000001096d27fa _PyEval_EvalFrameDefault + 26538
42 org.python.python 0x0000000109600d61 function_code_fastcall + 177
43 org.python.python 0x00000001096d5bd4 call_function + 772
44 org.python.python 0x00000001096d27fa _PyEval_EvalFrameDefault + 26538
45 org.python.python 0x0000000109600d61 function_code_fastcall + 177
46 org.python.python 0x00000001096d5bd4 call_function + 772
47 org.python.python 0x00000001096d28ae _PyEval_EvalFrameDefault + 26718
48 org.python.python 0x0000000109600d61 function_code_fastcall + 177
49 org.python.python 0x00000001096d5bd4 call_function + 772
50 org.python.python 0x00000001096d28ae _PyEval_EvalFrameDefault + 26718
51 org.python.python 0x0000000109600d61 function_code_fastcall + 177
52 org.python.python 0x00000001096d5bd4 call_function + 772
53 org.python.python 0x00000001096d27fa _PyEval_EvalFrameDefault + 26538
54 org.python.python 0x00000001096d6a2c _PyEval_EvalCodeWithName + 3276
55 org.python.python 0x0000000109600879 _PyFunction_FastCallKeywords + 217
56 org.python.python 0x00000001096d5bd4 call_function + 772
57 org.python.python 0x00000001096cc5c4 _PyEval_EvalFrameDefault + 1396
58 org.python.python 0x0000000109600d61 function_code_fastcall + 177
59 org.python.python 0x00000001096d5bd4 call_function + 772
60 org.python.python 0x00000001096d27fa _PyEval_EvalFrameDefault + 26538
61 org.python.python 0x0000000109600d61 function_code_fastcall + 177
62 org.python.python 0x0000000109601873 _PyObject_Call_Prepend + 131
63 org.python.python 0x00000001096009d8 PyObject_Call + 136
64 QtCore.so 0x00000001177cff17 PyQtSlot::call(_object*, _object*) const + 39
65 QtCore.so 0x00000001177cfe26 PyQtSlot::invoke(void**, _object*, void*, bool) const + 374
66 QtCore.so 0x00000001177d0925 PyQtSlotProxy::unislot(void**) + 85
67 QtCore.so 0x00000001177d089a PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
68 QtCore 0x000000011725313d QMetaObject::activate(QObject*, int, int, void**) + 1773
69 QtCore 0x000000011725b1f2 QTimer::timerEvent(QTimerEvent*) + 98
70 QtCore.so 0x00000001176c6028 sipQTimer::timerEvent(QTimerEvent*) + 120
71 QtCore 0x000000011724bab6 QObject::event(QEvent*) + 102
72 QtCore.so 0x00000001176c5e9b sipQTimer::event(QEvent*) + 187
73 QtWidgets 0x000000011653667d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
74 QtWidgets 0x0000000116537a82 QApplication::notify(QObject*, QEvent*) + 594
75 QtWidgets.so 0x00000001160f63ca sipQApplication::notify(QObject*, QEvent*) + 234
76 QtCore 0x0000000117222324 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
77 QtCore 0x000000011727b93f QTimerInfoList::activateTimers() + 991
78 libqcocoa.dylib 0x0000000121122032 0x1210ed000 + 217138
79 com.apple.CoreFoundation 0x00007fff2c4e8b21 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
80 com.apple.CoreFoundation 0x00007fff2c4e8ac0 __CFRunLoopDoSource0 + 103
81 com.apple.CoreFoundation 0x00007fff2c4e8930 __CFRunLoopDoSources0 + 301
82 com.apple.CoreFoundation 0x00007fff2c4e7740 __CFRunLoopRun + 1272
83 com.apple.CoreFoundation 0x00007fff2c4e6bd3 CFRunLoopRunSpecific + 499
84 com.apple.HIToolbox 0x00007fff2b03c65d RunCurrentEventLoopInMode + 292
85 com.apple.HIToolbox 0x00007fff2b03c39d ReceiveNextEventCommon + 600
86 com.apple.HIToolbox 0x00007fff2b03c127 _BlockUntilNextEventMatchingListInModeWithFilter + 64
87 com.apple.AppKit 0x00007fff296acba4 _DPSNextEvent + 990
88 com.apple.AppKit 0x00007fff296ab380 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1352
89 com.apple.AppKit 0x00007fff2969d09e -[NSApplication run] + 658
90 libqcocoa.dylib 0x0000000121122de3 0x1210ed000 + 220643
91 QtCore 0x000000011721d93f QEventLoop::exec(QFlags) + 431
92 QtCore 0x0000000117222932 QCoreApplication::exec() + 130
93 QtWidgets.so 0x00000001161e57d2 meth_QApplication_exec_(_object*, _object*) + 82
94 org.python.python 0x0000000109601382 _PyMethodDef_RawFastCallKeywords + 226
95 org.python.python 0x00000001096008b9 _PyCFunction_FastCallKeywords + 41
96 org.python.python 0x00000001096d5b60 call_function + 656
97 org.python.python 0x00000001096d2817 _PyEval_EvalFrameDefault + 26567
98 org.python.python 0x0000000109600d61 function_code_fastcall + 177
99 org.python.python 0x00000001096d5bd4 call_function + 772
100 org.python.python 0x00000001096d2817 _PyEval_EvalFrameDefault + 26567
101 org.python.python 0x00000001096d6a2c _PyEval_EvalCodeWithName + 3276
102 org.python.python 0x0000000109600879 _PyFunction_FastCallKeywords + 217
103 org.python.python 0x00000001096d5bd4 call_function + 772
104 org.python.python 0x00000001096d28ae _PyEval_EvalFrameDefault + 26718
105 org.python.python 0x00000001096d6a2c _PyEval_EvalCodeWithName + 3276
106 org.python.python 0x00000001096cbfb0 PyEval_EvalCode + 48
107 org.python.python 0x00000001096c9547 builtin_exec + 583
108 org.python.python 0x000000010960152d _PyMethodDef_RawFastCallKeywords + 653
109 org.python.python 0x00000001096008b9 _PyCFunction_FastCallKeywords + 41
110 org.python.python 0x00000001096d5b60 call_function + 656
111 org.python.python 0x00000001096d28ae _PyEval_EvalFrameDefault + 26718
112 org.python.python 0x00000001096d6a2c _PyEval_EvalCodeWithName + 3276
113 org.python.python 0x0000000109600879 _PyFunction_FastCallKeywords + 217
114 org.python.python 0x00000001096d5bd4 call_function + 772
115 org.python.python 0x00000001096d28ae _PyEval_EvalFrameDefault + 26718
116 org.python.python 0x00000001096d6a2c _PyEval_EvalCodeWithName + 3276
117 org.python.python 0x0000000109600377 _PyFunction_FastCallDict + 455
118 org.python.python 0x0000000109730af3 pymain_run_module + 147
119 org.python.python 0x000000010972fbdc pymain_main + 5900
120 org.python.python 0x000000010972e4c3 Py_Main + 51
121 edu.ucsf.cgl.ChimeraX 0x00000001095cfdc8 main + 120
122 libdyld.dylib 0x00007fff639f37fd start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff63b36ce6 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff63bf8185 _pthread_cond_wait + 701
2 libopenblasp-r0.3.7.dylib 0x000000010aef3c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff63bf7e65 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff63bf383b thread_start + 15
Thread 2:
0 libsystem_kernel.dylib 0x00007fff63b36ce6 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff63bf8185 _pthread_cond_wait + 701
2 libopenblasp-r0.3.7.dylib 0x000000010aef3c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff63bf7e65 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff63bf383b thread_start + 15
Thread 3:
0 libsystem_kernel.dylib 0x00007fff63b36ce6 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff63bf8185 _pthread_cond_wait + 701
2 libopenblasp-r0.3.7.dylib 0x000000010aef3c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff63bf7e65 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff63bf383b thread_start + 15
Thread 4:
0 libsystem_kernel.dylib 0x00007fff63b36ce6 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff63bf8185 _pthread_cond_wait + 701
2 com.apple.GeForceMTLDriver 0x00007fff27dd8ed3 0x7fff27c69000 + 1507027
3 libsystem_pthread.dylib 0x00007fff63bf7e65 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff63bf383b thread_start + 15
Thread 5:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff63b3425a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff63b345d0 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2c4e8d0b __CFRunLoopServiceMachPort + 322
3 com.apple.CoreFoundation 0x00007fff2c4e78e7 __CFRunLoopRun + 1695
4 com.apple.CoreFoundation 0x00007fff2c4e6bd3 CFRunLoopRunSpecific + 499
5 com.apple.AppKit 0x00007fff2984f792 _NSEventThread + 132
6 libsystem_pthread.dylib 0x00007fff63bf7e65 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff63bf383b thread_start + 15
Thread 6:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff63b3425a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff63b345d0 mach_msg + 60
2 QtWebEngineCore 0x000000011bce732d 0x119b45000 + 35267373
3 QtWebEngineCore 0x000000011bce722f 0x119b45000 + 35267119
4 QtWebEngineCore 0x000000011bc9b05d 0x119b45000 + 34955357
5 QtWebEngineCore 0x000000011bcc4085 0x119b45000 + 35123333
6 QtWebEngineCore 0x000000011bd169bc 0x119b45000 + 35461564
7 QtWebEngineCore 0x000000011bd56717 0x119b45000 + 35723031
8 libsystem_pthread.dylib 0x00007fff63bf7e65 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff63bf383b thread_start + 15
Thread 7:: DnsConfigService
0 libsystem_kernel.dylib 0x00007fff63b38bce kevent + 10
1 QtWebEngineCore 0x000000011bfa89a9 0x119b45000 + 38156713
2 QtWebEngineCore 0x000000011bfa5cbd 0x119b45000 + 38145213
3 QtWebEngineCore 0x000000011bd5ccdc 0x119b45000 + 35749084
4 QtWebEngineCore 0x000000011bcc4085 0x119b45000 + 35123333
5 QtWebEngineCore 0x000000011bd169bc 0x119b45000 + 35461564
6 QtWebEngineCore 0x000000011bd56717 0x119b45000 + 35723031
7 libsystem_pthread.dylib 0x00007fff63bf7e65 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff63bf383b thread_start + 15
Thread 8:: TaskSchedulerServiceThread
0 libsystem_kernel.dylib 0x00007fff63b38bce kevent + 10
1 QtWebEngineCore 0x000000011bfa89a9 0x119b45000 + 38156713
2 QtWebEngineCore 0x000000011bfa5cbd 0x119b45000 + 38145213
3 QtWebEngineCore 0x000000011bd5ccc4 0x119b45000 + 35749060
4 QtWebEngineCore 0x000000011bcc4085 0x119b45000 + 35123333
5 QtWebEngineCore 0x000000011bd05a74 0x119b45000 + 35392116
6 QtWebEngineCore 0x000000011bd169bc 0x119b45000 + 35461564
7 QtWebEngineCore 0x000000011bd56717 0x119b45000 + 35723031
8 libsystem_pthread.dylib 0x00007fff63bf7e65 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff63bf383b thread_start + 15
Thread 9:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff63b3425a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff63b345d0 mach_msg + 60
2 QtWebEngineCore 0x000000011bce732d 0x119b45000 + 35267373
3 QtWebEngineCore 0x000000011bce7421 0x119b45000 + 35267617
4 QtWebEngineCore 0x000000011bcfed28 0x119b45000 + 35364136
5 QtWebEngineCore 0x000000011bcff65b 0x119b45000 + 35366491
6 QtWebEngineCore 0x000000011bcff2c4 0x119b45000 + 35365572
7 QtWebEngineCore 0x000000011bd56717 0x119b45000 + 35723031
8 libsystem_pthread.dylib 0x00007fff63bf7e65 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff63bf383b thread_start + 15
Thread 10:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff63b3425a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff63b345d0 mach_msg + 60
2 QtWebEngineCore 0x000000011bce732d 0x119b45000 + 35267373
3 QtWebEngineCore 0x000000011bce7421 0x119b45000 + 35267617
4 QtWebEngineCore 0x000000011bcfed28 0x119b45000 + 35364136
5 QtWebEngineCore 0x000000011bcff65b 0x119b45000 + 35366491
6 QtWebEngineCore 0x000000011bcff2c4 0x119b45000 + 35365572
7 QtWebEngineCore 0x000000011bd56717 0x119b45000 + 35723031
8 libsystem_pthread.dylib 0x00007fff63bf7e65 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff63bf383b thread_start + 15
Thread 11:: TaskSchedulerBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff63b3425a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff63b345d0 mach_msg + 60
2 QtWebEngineCore 0x000000011bce732d 0x119b45000 + 35267373
3 QtWebEngineCore 0x000000011bce7421 0x119b45000 + 35267617
4 QtWebEngineCore 0x000000011bcfed28 0x119b45000 + 35364136
5 QtWebEngineCore 0x000000011bcff65b 0x119b45000 + 35366491
6 QtWebEngineCore 0x000000011bcff234 0x119b45000 + 35365428
7 QtWebEngineCore 0x000000011bd56717 0x119b45000 + 35723031
8 libsystem_pthread.dylib 0x00007fff63bf7e65 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff63bf383b thread_start + 15
Thread 12:: TaskSchedulerBackgroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff63b3425a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff63b345d0 mach_msg + 60
2 QtWebEngineCore 0x000000011bce732d 0x119b45000 + 35267373
3 QtWebEngineCore 0x000000011bce7421 0x119b45000 + 35267617
4 QtWebEngineCore 0x000000011bcfed28 0x119b45000 + 35364136
5 QtWebEngineCore 0x000000011bcff65b 0x119b45000 + 35366491
6 QtWebEngineCore 0x000000011bcff234 0x119b45000 + 35365428
7 QtWebEngineCore 0x000000011bd56717 0x119b45000 + 35723031
8 libsystem_pthread.dylib 0x00007fff63bf7e65 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff63bf383b thread_start + 15
Thread 13:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff63b38bce kevent + 10
1 QtWebEngineCore 0x000000011bfa89a9 0x119b45000 + 38156713
2 QtWebEngineCore 0x000000011bfa5cbd 0x119b45000 + 38145213
3 QtWebEngineCore 0x000000011bd5ccc4 0x119b45000 + 35749060
4 QtWebEngineCore 0x000000011bcc4085 0x119b45000 + 35123333
5 QtWebEngineCore 0x000000011b632fe4 0x119b45000 + 28237796
6 QtWebEngineCore 0x000000011bd169bc 0x119b45000 + 35461564
7 QtWebEngineCore 0x000000011bd56717 0x119b45000 + 35723031
8 libsystem_pthread.dylib 0x00007fff63bf7e65 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff63bf383b thread_start + 15
Thread 14:: TaskSchedulerSingleThreadSharedBackgroundBlocking0
0 libsystem_kernel.dylib 0x00007fff63b3425a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff63b345d0 mach_msg + 60
2 QtWebEngineCore 0x000000011bce732d 0x119b45000 + 35267373
3 QtWebEngineCore 0x000000011bce722f 0x119b45000 + 35267119
4 QtWebEngineCore 0x000000011bcfed1a 0x119b45000 + 35364122
5 QtWebEngineCore 0x000000011bcff3bf 0x119b45000 + 35365823
6 QtWebEngineCore 0x000000011bcff264 0x119b45000 + 35365476
7 QtWebEngineCore 0x000000011bd56717 0x119b45000 + 35723031
8 libsystem_pthread.dylib 0x00007fff63bf7e65 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff63bf383b thread_start + 15
Thread 15:: CompositorTileWorker1/58627
0 libsystem_kernel.dylib 0x00007fff63b36ce6 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff63bf8185 _pthread_cond_wait + 701
2 QtWebEngineCore 0x000000011bd54fa8 0x119b45000 + 35717032
3 QtWebEngineCore 0x000000011ccdb4c8 0x119b45000 + 51995848
4 QtWebEngineCore 0x000000011bd15694 0x119b45000 + 35456660
5 QtWebEngineCore 0x000000011bd56717 0x119b45000 + 35723031
6 libsystem_pthread.dylib 0x00007fff63bf7e65 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff63bf383b thread_start + 15
Thread 16:: AudioThread
0 libsystem_kernel.dylib 0x00007fff63b3425a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff63b345d0 mach_msg + 60
2 QtWebEngineCore 0x000000011bce732d 0x119b45000 + 35267373
3 QtWebEngineCore 0x000000011bce722f 0x119b45000 + 35267119
4 QtWebEngineCore 0x000000011bc9b05d 0x119b45000 + 34955357
5 QtWebEngineCore 0x000000011bcc4085 0x119b45000 + 35123333
6 QtWebEngineCore 0x000000011bd169bc 0x119b45000 + 35461564
7 QtWebEngineCore 0x000000011bd56717 0x119b45000 + 35723031
8 libsystem_pthread.dylib 0x00007fff63bf7e65 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff63bf383b thread_start + 15
Thread 17:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff63b3425a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff63b345d0 mach_msg + 60
2 QtWebEngineCore 0x000000011bce732d 0x119b45000 + 35267373
3 QtWebEngineCore 0x000000011bce722f 0x119b45000 + 35267119
4 QtWebEngineCore 0x000000011bc9b05d 0x119b45000 + 34955357
5 QtWebEngineCore 0x000000011bcc4085 0x119b45000 + 35123333
6 QtWebEngineCore 0x000000011bd169bc 0x119b45000 + 35461564
7 QtWebEngineCore 0x000000011bd56717 0x119b45000 + 35723031
8 libsystem_pthread.dylib 0x00007fff63bf7e65 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff63bf383b thread_start + 15
Thread 18:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff63b3425a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff63b345d0 mach_msg + 60
2 QtWebEngineCore 0x000000011bce732d 0x119b45000 + 35267373
3 QtWebEngineCore 0x000000011bc9b052 0x119b45000 + 34955346
4 QtWebEngineCore 0x000000011bcc4085 0x119b45000 + 35123333
5 QtWebEngineCore 0x000000011bd169bc 0x119b45000 + 35461564
6 QtWebEngineCore 0x000000011bd56717 0x119b45000 + 35723031
7 libsystem_pthread.dylib 0x00007fff63bf7e65 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff63bf383b thread_start + 15
Thread 19:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff63b38bce kevent + 10
1 QtWebEngineCore 0x000000011bfa89a9 0x119b45000 + 38156713
2 QtWebEngineCore 0x000000011bfa5cbd 0x119b45000 + 38145213
3 QtWebEngineCore 0x000000011bd5ccdc 0x119b45000 + 35749084
4 QtWebEngineCore 0x000000011bcc4085 0x119b45000 + 35123333
5 QtWebEngineCore 0x000000011bd169bc 0x119b45000 + 35461564
6 QtWebEngineCore 0x000000011bd56717 0x119b45000 + 35723031
7 libsystem_pthread.dylib 0x00007fff63bf7e65 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff63bf383b thread_start + 15
Thread 20:: TaskSchedulerSingleThreadForegroundBlocking1
0 libsystem_kernel.dylib 0x00007fff63b3425a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff63b345d0 mach_msg + 60
2 QtWebEngineCore 0x000000011bce732d 0x119b45000 + 35267373
3 QtWebEngineCore 0x000000011bce722f 0x119b45000 + 35267119
4 QtWebEngineCore 0x000000011bcfed1a 0x119b45000 + 35364122
5 QtWebEngineCore 0x000000011bcff65b 0x119b45000 + 35366491
6 QtWebEngineCore 0x000000011bcff324 0x119b45000 + 35365668
7 QtWebEngineCore 0x000000011bd56717 0x119b45000 + 35723031
8 libsystem_pthread.dylib 0x00007fff63bf7e65 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff63bf383b thread_start + 15
Thread 21:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff63b3425a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff63b345d0 mach_msg + 60
2 QtWebEngineCore 0x000000011bce732d 0x119b45000 + 35267373
3 QtWebEngineCore 0x000000011bce722f 0x119b45000 + 35267119
4 QtWebEngineCore 0x000000011bc9b05d 0x119b45000 + 34955357
5 QtWebEngineCore 0x000000011bcc4085 0x119b45000 + 35123333
6 QtWebEngineCore 0x000000011bd169bc 0x119b45000 + 35461564
7 QtWebEngineCore 0x000000011bd56717 0x119b45000 + 35723031
8 libsystem_pthread.dylib 0x00007fff63bf7e65 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff63bf383b thread_start + 15
Thread 22:
0 libsystem_kernel.dylib 0x00007fff63b36ce6 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff63bf8185 _pthread_cond_wait + 701
2 interpreter.cpython-37m-darwin.so 0x0000000135e0e1df th_worker(void*) + 191
3 libsystem_pthread.dylib 0x00007fff63bf7e65 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff63bf383b thread_start + 15
Thread 23:
0 libsystem_kernel.dylib 0x00007fff63b36ce6 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff63bf8185 _pthread_cond_wait + 701
2 interpreter.cpython-37m-darwin.so 0x0000000135e0e1df th_worker(void*) + 191
3 libsystem_pthread.dylib 0x00007fff63bf7e65 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff63bf383b thread_start + 15
Thread 24:
0 libsystem_kernel.dylib 0x00007fff63b36ce6 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff63bf8185 _pthread_cond_wait + 701
2 interpreter.cpython-37m-darwin.so 0x0000000135e0e1df th_worker(void*) + 191
3 libsystem_pthread.dylib 0x00007fff63bf7e65 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff63bf383b thread_start + 15
Thread 25:
0 libsystem_kernel.dylib 0x00007fff63b36ce6 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff63bf8185 _pthread_cond_wait + 701
2 interpreter.cpython-37m-darwin.so 0x0000000135e0e1df th_worker(void*) + 191
3 libsystem_pthread.dylib 0x00007fff63bf7e65 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff63bf383b thread_start + 15
Thread 26:
0 libsystem_pthread.dylib 0x00007fff63bf3818 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000117b4edc0 rcx: 0x00007fe0e8087a58 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x0000000000000006 rbp: 0x00007fe0e8087a80 rsp: 0x00007fe0e8087a58
r8: 0x00007fe0e8087f48 r9: 0x509eb3cd57afae6d r10: 0x0000000117b4edc0 r11: 0x0000000000000246
r12: 0x0000000000000307 r13: 0x00007fe0d81d8000 r14: 0x0000000000000006 r15: 0x0000000000000016
rip: 0x00007fff63b3a7fa rfl: 0x0000000000000246 cr2: 0x000060000223eeb8
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x7fff615e7000 - 0x7fff615f0ff7 libheimdal-asn1.dylib (564.60.2) /usr/lib/libheimdal-asn1.dylib
0x7fff615f1000 - 0x7fff616e1ff7 libiconv.2.dylib (59) /usr/lib/libiconv.2.dylib
0x7fff616e2000 - 0x7fff6193aff7 libicucore.A.dylib (64252.0.1) /usr/lib/libicucore.A.dylib
0x7fff61954000 - 0x7fff61955fff liblangid.dylib (133) /usr/lib/liblangid.dylib
0x7fff61956000 - 0x7fff6196eff3 liblzma.5.dylib (16) /usr/lib/liblzma.5.dylib
0x7fff61986000 - 0x7fff61a2dfff libmecab.dylib (883.1.1) /usr/lib/libmecab.dylib
0x7fff61a2e000 - 0x7fff61c90fe1 libmecabra.dylib (883.1.1) /usr/lib/libmecabra.dylib
0x7fff62000000 - 0x7fff6202fff7 libncurses.5.4.dylib (57) /usr/lib/libncurses.5.4.dylib
0x7fff6215e000 - 0x7fff625d4ff7 libnetwork.dylib (1880.60.5) /usr/lib/libnetwork.dylib
0x7fff625d5000 - 0x7fff625ebfff libnetworkextension.dylib (1095.60.2) /usr/lib/libnetworkextension.dylib
0x7fff62673000 - 0x7fff626a4fc6 libobjc.A.dylib (781.2) /usr/lib/libobjc.A.dylib
0x7fff626b7000 - 0x7fff626bbfff libpam.2.dylib (25) /usr/lib/libpam.2.dylib
0x7fff626be000 - 0x7fff626f4ff7 libpcap.A.dylib (89.60.2) /usr/lib/libpcap.A.dylib
0x7fff62732000 - 0x7fff62740ff9 libperfcheck.dylib (37) /usr/lib/libperfcheck.dylib
0x7fff62776000 - 0x7fff6278eff7 libresolv.9.dylib (67.40.1) /usr/lib/libresolv.9.dylib
0x7fff62790000 - 0x7fff627d4fff libsandbox.1.dylib (1217.80.1) /usr/lib/libsandbox.1.dylib
0x7fff627e8000 - 0x7fff627e9ff7 libspindump.dylib (281.2) /usr/lib/libspindump.dylib
0x7fff627ea000 - 0x7fff629d7ff7 libsqlite3.dylib (308.4) /usr/lib/libsqlite3.dylib
0x7fff62afb000 - 0x7fff62b45ff7 libstdc++.6.dylib (104.1) /usr/lib/libstdc++.6.dylib
0x7fff62bcd000 - 0x7fff62c28ff8 libusrtcp.dylib (1880.60.5) /usr/lib/libusrtcp.dylib
0x7fff62c29000 - 0x7fff62c2cffb libutil.dylib (57) /usr/lib/libutil.dylib
0x7fff62c2d000 - 0x7fff62c3afff libxar.1.dylib (420) /usr/lib/libxar.1.dylib
0x7fff62c40000 - 0x7fff62d22ff7 libxml2.2.dylib (32.14) /usr/lib/libxml2.2.dylib
0x7fff62d26000 - 0x7fff62d4efff libxslt.1.dylib (16.7) /usr/lib/libxslt.1.dylib
0x7fff62d4f000 - 0x7fff62d61ffb libz.1.dylib (76) /usr/lib/libz.1.dylib
0x7fff637c5000 - 0x7fff637caff3 libcache.dylib (83) /usr/lib/system/libcache.dylib
0x7fff637cb000 - 0x7fff637d6fff libcommonCrypto.dylib (60165) /usr/lib/system/libcommonCrypto.dylib
0x7fff637d7000 - 0x7fff637defff libcompiler_rt.dylib (101.2) /usr/lib/system/libcompiler_rt.dylib
0x7fff637df000 - 0x7fff637e8fff libcopyfile.dylib (166.40.1) /usr/lib/system/libcopyfile.dylib
0x7fff637e9000 - 0x7fff63880fdb libcorecrypto.dylib (866.80.2) /usr/lib/system/libcorecrypto.dylib
0x7fff63997000 - 0x7fff639d8ff0 libdispatch.dylib (1173.60.1) /usr/lib/system/libdispatch.dylib
0x7fff639d9000 - 0x7fff63a0eff7 libdyld.dylib (733.8) /usr/lib/system/libdyld.dylib
0x7fff63a0f000 - 0x7fff63a0fffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib
0x7fff63a10000 - 0x7fff63a1cff7 libkxld.dylib (6153.81.5) /usr/lib/system/libkxld.dylib
0x7fff63a1d000 - 0x7fff63a1dff7 liblaunch.dylib (1738.80.8) /usr/lib/system/liblaunch.dylib
0x7fff63a1e000 - 0x7fff63a23ff7 libmacho.dylib (949.0.1) /usr/lib/system/libmacho.dylib
0x7fff63a24000 - 0x7fff63a26ff7 libquarantine.dylib (110.40.3) /usr/lib/system/libquarantine.dylib
0x7fff63a27000 - 0x7fff63a28ff7 libremovefile.dylib (48) /usr/lib/system/libremovefile.dylib
0x7fff63a29000 - 0x7fff63a40fff libsystem_asl.dylib (377.60.2) /usr/lib/system/libsystem_asl.dylib
0x7fff63a41000 - 0x7fff63a41fff libsystem_blocks.dylib (74) /usr/lib/system/libsystem_blocks.dylib
0x7fff63a42000 - 0x7fff63ac9ff7 libsystem_c.dylib (1353.60.8) /usr/lib/system/libsystem_c.dylib
0x7fff63aca000 - 0x7fff63acdffb libsystem_configuration.dylib (1061.80.3) /usr/lib/system/libsystem_configuration.dylib
0x7fff63ace000 - 0x7fff63ad1ff7 libsystem_coreservices.dylib (114) /usr/lib/system/libsystem_coreservices.dylib
0x7fff63ad2000 - 0x7fff63adafff libsystem_darwin.dylib (1353.60.8) /usr/lib/system/libsystem_darwin.dylib
0x7fff63adb000 - 0x7fff63ae2ffb libsystem_dnssd.dylib (1096.60.2) /usr/lib/system/libsystem_dnssd.dylib
0x7fff63ae3000 - 0x7fff63ae4ffb libsystem_featureflags.dylib (17) /usr/lib/system/libsystem_featureflags.dylib
0x7fff63ae5000 - 0x7fff63b32fff libsystem_info.dylib (538) /usr/lib/system/libsystem_info.dylib
0x7fff63b33000 - 0x7fff63b5fff7 libsystem_kernel.dylib (6153.81.5) /usr/lib/system/libsystem_kernel.dylib
0x7fff63b60000 - 0x7fff63ba7fcf libsystem_m.dylib (3178) /usr/lib/system/libsystem_m.dylib
0x7fff63ba8000 - 0x7fff63bcffff libsystem_malloc.dylib (283.60.1) /usr/lib/system/libsystem_malloc.dylib
0x7fff63bd0000 - 0x7fff63bddffb libsystem_networkextension.dylib (1095.60.2) /usr/lib/system/libsystem_networkextension.dylib
0x7fff63bde000 - 0x7fff63be7ff3 libsystem_notify.dylib (241) /usr/lib/system/libsystem_notify.dylib
0x7fff63be8000 - 0x7fff63bf1fef libsystem_platform.dylib (220) /usr/lib/system/libsystem_platform.dylib
0x7fff63bf2000 - 0x7fff63bfcfff libsystem_pthread.dylib (416.60.2) /usr/lib/system/libsystem_pthread.dylib
0x7fff63bfd000 - 0x7fff63c01fff libsystem_sandbox.dylib (1217.80.1) /usr/lib/system/libsystem_sandbox.dylib
0x7fff63c02000 - 0x7fff63c04fff libsystem_secinit.dylib (62.80.1) /usr/lib/system/libsystem_secinit.dylib
0x7fff63c05000 - 0x7fff63c0cffb libsystem_symptoms.dylib (1238.60.1) /usr/lib/system/libsystem_symptoms.dylib
0x7fff63c0d000 - 0x7fff63c23ff2 libsystem_trace.dylib (1147.80.3) /usr/lib/system/libsystem_trace.dylib
0x7fff63c25000 - 0x7fff63c2affb libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff63c2b000 - 0x7fff63c60ffe libxpc.dylib (1738.80.8) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 4
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 1321439
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=882.9M resident=0K(0%) swapped_out_or_unallocated=882.9M(100%)
Writable regions: Total=29.3G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=29.3G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Activity Tracing 256K 1
CG backing stores 440K 2
CG image 12K 1
CoreAnimation 60K 11
CoreGraphics 8K 1
CoreImage 8K 2
CoreUI image data 556K 9
Foundation 4K 1
Kernel Alloc Once 8K 1
MALLOC 21.0G 2717
MALLOC guard page 48K 9
MALLOC_MEDIUM (reserved) 184.0M 4 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated)
Memory Tag 242 12K 1
OpenGL GLSL 512K 6
PROTECTED_MEMORY 4K 1
STACK GUARD 104K 26
Stack 141.2M 27
Stack Guard 56.0M 1
VM_ALLOCATE 7.7G 1967
VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)
__DATA 58.2M 545
__DATA_CONST 40K 4
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 378.9M 145
__OBJC_RO 32.0M 1
__OBJC_RW 1780K 2
__TEXT 504.0M 507
__UNICODE 564K 1
mapped file 81.2M 35
shared memory 644K 17
=========== ======= =======
TOTAL 30.4G 6049
TOTAL, minus reserved VM space 29.9G 6049
Log:
UCSF ChimeraX version: 1.1.1 (2020-10-07)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/nic/Downloads/Ribosome/sptsgd_00/threed_01.hdf
Opened threed_01.hdf, grid size 96,96,96, pixel 5.24, shown at level 3.4, step
1, values float32
OpenGL version: 4.1 NVIDIA-14.0.31 355.11.11.10.10.143
OpenGL renderer: NVIDIA GeForce GTX 780M OpenGL Engine
OpenGL vendor: NVIDIA CorporationHardware:
Hardware Overview:
Model Name: iMac
Model Identifier: iMac14,2
Processor Name: Quad-Core Intel Core i5
Processor Speed: 3.4 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 6 MB
Memory: 32 GB
Boot ROM Version: 141.0.0.0.0
SMC Version (system): 2.15f7
Software:
System Software Overview:
System Version: macOS 10.15.3 (19D76)
Kernel Version: Darwin 19.3.0
Time since boot: 19 days 3:43
Graphics/Displays:
NVIDIA GeForce GTX 780M:
Chipset Model: NVIDIA GeForce GTX 780M
Type: GPU
Bus: PCIe
PCIe Lane Width: x16
VRAM (Total): 4 GB
Vendor: NVIDIA (0x10de)
Device ID: 0x119e
Revision ID: 0x00a2
ROM Revision: 3782
Metal: Supported, feature set macOS GPUFamily1 v4
Displays:
iMac:
Display Type: LCD
Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition)
UI Looks like: 2560 x 1440
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.9
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.0
Babel: 2.8.0
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.6.20
chardet: 3.0.4
ChimeraX-AddH: 2.1.3
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.6.1
ChimeraX-AtomSearch: 2.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.0.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.0
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.0
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.0
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-CommandLine: 1.1.3
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.1.1
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.0.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-DataFormats: 1.0
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.0
ChimeraX-Help: 1.0
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.0
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.0
ChimeraX-Log: 1.1.1
ChimeraX-LookingGlass: 1.1
ChimeraX-Map: 1.0.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.1
ChimeraX-MDcrds: 2.0
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.0
ChimeraX-mmCIF: 2.2
ChimeraX-MMTF: 2.0
ChimeraX-Modeller: 1.0
ChimeraX-ModelPanel: 1.0
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.0
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0
ChimeraX-OpenCommand: 1.2.1
ChimeraX-PDB: 2.1
ChimeraX-PDBBio: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0
ChimeraX-PubChem: 2.0
ChimeraX-Read-Pbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.0
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.2
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.0.4
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.0
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0
ChimeraX-ToolshedUtils: 1.0
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.2.3
ChimeraX-uniprot: 2.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.20
decorator: 4.4.2
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.16
imagecodecs: 2020.5.30
imagecodecs-lite: 2020.1.31
imagesize: 1.2.0
ipykernel: 5.3.0
ipython: 7.15.0
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.3
jupyter-core: 4.6.3
kiwisolver: 1.2.0
line-profiler: 2.1.2
lxml: 4.5.1
MarkupSafe: 1.1.1
matplotlib: 3.2.1
msgpack: 1.0.0
netifaces: 0.10.9
networkx: 2.4
numexpr: 2.7.1
numpy: 1.18.5
numpydoc: 1.0.0
openvr: 1.12.501
packaging: 20.4
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.1.2
pip: 20.2.2
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.7
psutil: 5.7.0
ptyprocess: 0.6.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.6.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.12.3
PyQt5-sip: 4.19.19
PyQtWebEngine-commercial: 5.12.1
python-dateutil: 2.8.1
pytz: 2020.1
pyzmq: 19.0.2
qtconsole: 4.7.4
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.4.1
setuptools: 49.4.0
sfftk-rw: 0.6.6.dev0
six: 1.15.0
snowballstemmer: 2.0.0
sortedcontainers: 2.2.2
Sphinx: 3.1.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 1.0.3
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.4
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.6.3
tinyarray: 1.2.2
tornado: 6.0.4
traitlets: 5.0.4
urllib3: 1.25.10
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.34.2
![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
ChimeraX was using 30 Gb. As usual Apple graphics driver crashes when using lots of memory. Idea for limiting Apple OpenGL memory use discussed in #4350.