Opened 5 years ago

Closed 5 years ago

#4410 closed defect (fixed)

Color key: 'FontOption' object has no attribute '_callback'

Reported by: chimerax-bug-report@… Owned by: pett
Priority: normal Milestone:
Component: Depiction Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Linux-5.8.0-48-generic-x86_64-with-glibc2.14
ChimeraX Version: 1.2.dev202103240027 (2021-03-24 00:27:13 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.2.dev202103240027 (2021-03-24)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /home/guozq/Music/qitan/job021/postprocess_masked.mrc

Opened postprocess_masked.mrc as #1, grid size 256,256,256, pixel 1.09, shown
at level 0.00917, step 1, values float32  

> open /home/guozq/Music/qitan/LocalRes/job025/relion_locres.mrc

Opened relion_locres.mrc as #2, grid size 256,256,256, pixel 1.08, shown at
level 18.6, step 1, values float32  

> ui tool show "Surface Color"

> color sample #1.1 map #2 palette #ff0000:#ffffff:#0000ff

Map values for surface "surface": minimum 2.16, mean 2.349, maximum 3.171  

> color sample #1.1 map #2 palette #ff0000:#ffffff:#0000ff:#808080:#808080

Map values for surface "surface": minimum 2.16, mean 2.349, maximum 3.171  

> color sample #1.1 map #2 palette
> 2.16,#0000ff:2.413,#7f7fff:2.665,#ffffff:2.918,#ff7f7f:3.171,#ff0000

Map values for surface "surface": minimum 2.16, mean 2.349, maximum 3.171  

> set bgColor white

> volume #1 level 0.02923

> color sample #1.1 map #2 palette
> 2.16,#0000ff:2.413,#00ffff:2.665,#00ff00:2.918,#ffff00:3.171,#ff0000

Map values for surface "surface": minimum 2.16, mean 2.255, maximum 2.933  

> color sample #1.1 map #2 palette
> 1.9,#0000ff:2,#00ffff:2.1,#00ff00:2.3,#ffff00:2.5,#ff0000

Map values for surface "surface": minimum 2.16, mean 2.255, maximum 2.933  

> color sample #1.1 map #2 palette
> 2,#0000ff:2.1,#00ffff:2.2,#00ff00:2.4,#ffff00:2.8,#ff0000

Map values for surface "surface": minimum 2.16, mean 2.255, maximum 2.933  

> color sample #1.1 map #2 palette
> 2,#0000ff:2.2,#00ffff:2.3,#00ff00:2.5,#ffff00:2.7,#ff0000

Map values for surface "surface": minimum 2.16, mean 2.255, maximum 2.933  

> key rainbow :2.0 :2.2 :2.3 :2.5 :2.7

> ui tool show "Color Key"

> ui mousemode left "color key"

Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.8/site-
packages/chimerax/core/toolshed/info.py", line 538, in start_tool  
ti = api._api_caller.start_tool(api, session, self, tool_info)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.8/site-
packages/chimerax/core/toolshed/__init__.py", line 1253, in start_tool  
return cls._get_func(api, "start_tool")(session, ti.name)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.8/site-
packages/chimerax/color_key/__init__.py", line 36, in start_tool  
return ColorKeyTool(session, tool_name)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.8/site-
packages/chimerax/color_key/tool.py", line 215, in __init__  
opt = opt_class(label, getattr(self.key, attr_name), self._opt_cb,
attr_name=attr_name, **kw)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.8/site-
packages/chimerax/ui/options/options.py", line 473, in __init__  
super().__init__(*args, **kw)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.8/site-
packages/chimerax/ui/options/options.py", line 358, in __init__  
super().__init__(*args, **kw)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.8/site-
packages/chimerax/ui/options/options.py", line 58, in __init__  
self._make_widget(**kw)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.8/site-
packages/chimerax/ui/options/options.py", line 341, in _make_widget  
self.remake_menu()  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.8/site-
packages/chimerax/ui/options/options.py", line 316, in remake_menu  
self.make_callback()  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.8/site-
packages/chimerax/ui/options/options.py", line 169, in make_callback  
if self._callback:  
AttributeError: 'FontOption' object has no attribute '_callback'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.8/site-
packages/chimerax/surface/surfcolorgui.py", line 345, in _create_color_key  
show_key(self.session, cmap)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.8/site-
packages/chimerax/color_key/cmd.py", line 177, in show_key  
run(session,"ui tool show 'Color Key'")  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.8/site-
packages/chimerax/core/commands/run.py", line 36, in run  
results = command.run(text, log=log, return_json=return_json)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.8/site-
packages/chimerax/core/commands/cli.py", line 2852, in run  
result = ci.function(session, **kw_args)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.8/site-
packages/chimerax/ui/cmd.py", line 203, in ui_tool_show  
bi.start_tool(session, name)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.8/site-
packages/chimerax/core/toolshed/info.py", line 543, in start_tool  
raise ToolshedError(  
chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Color Key
in bundle ChimeraX-ColorKey:  
'FontOption' object has no attribute '_callback'  
  
chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Color Key
in bundle ChimeraX-ColorKey:  
'FontOption' object has no attribute '_callback'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.8/site-
packages/chimerax/core/toolshed/info.py", line 543, in start_tool  
raise ToolshedError(  
  
See log for complete Python traceback.  
  




OpenGL version: 4.5 (Core Profile) Mesa 20.2.6
OpenGL renderer: llvmpipe (LLVM 11.0.0, 256 bits)
OpenGL vendor: Mesa/X.org
Manufacturer: innotek GmbH
Model: VirtualBox
OS: Ubuntu 20.04 focal
Architecture: 64bit ELF
Virutal Machine: oracle
CPU: 4 Intel(R) Core(TM) i7-6700K CPU @ 4.00GHz
Cache Size: 8192 KB
Memory:
	              total        used        free      shared  buff/cache   available
	Mem:           23Gi       1.9Gi        17Gi        54Mi       4.3Gi        21Gi
	Swap:         2.0Gi          0B       2.0Gi

Graphics:
	00:02.0 VGA compatible controller [0300]: VMware SVGA II Adapter [15ad:0405]	
	Subsystem: VMware SVGA II Adapter [15ad:0405]	
	Kernel driver in use: vmwgfx
Locale: ('en_US', 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.0
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2020.12.5
    cftime: 1.4.1
    chardet: 3.0.4
    ChimeraX-AddCharge: 1.0
    ChimeraX-AddH: 2.1.4
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.12
    ChimeraX-AtomicLibrary: 2.1
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.5
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.1
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.1
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.2.1
    ChimeraX-CommandLine: 1.1.3
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.2.dev202103240027
    ChimeraX-CoreFormats: 1.0
    ChimeraX-coulombic: 1.1
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.1
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.0
    ChimeraX-Hbonds: 2.1
    ChimeraX-Help: 1.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.0
    ChimeraX-ImageFormats: 1.1
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-Label: 1.0
    ChimeraX-LinuxSupport: 1.0
    ChimeraX-ListInfo: 1.1
    ChimeraX-Log: 1.1.1
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.0.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.0
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 1.1
    ChimeraX-MDcrds: 2.2
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.3
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.0
    ChimeraX-ModelPanel: 1.0.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0
    ChimeraX-OpenCommand: 1.5
    ChimeraX-PDB: 2.3.1
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.0.1
    ChimeraX-ReadPbonds: 1.0
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.4
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SeqView: 2.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.0
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.0.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.3
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.0.1
    ChimeraX-ToolshedUtils: 1.1
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.7
    ChimeraX-uniprot: 2.1
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.3
    comtypes: 1.1.7
    cxservices: 1.0
    cycler: 0.10.0
    Cython: 0.29.21
    decorator: 4.4.2
    distlib: 0.3.1
    distro: 1.5.0
    docutils: 0.16
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 2.10.0
    html2text: 2020.1.16
    idna: 2.10
    ihm: 0.17
    imagecodecs: 2020.5.30
    imagesize: 1.2.0
    ipykernel: 5.3.4
    ipython: 7.18.1
    ipython-genutils: 0.2.0
    jedi: 0.17.2
    Jinja2: 2.11.2
    jupyter-client: 6.1.7
    jupyter-core: 4.7.1
    kiwisolver: 1.3.1
    line-profiler: 2.1.2
    lxml: 4.6.2
    lz4: 3.1.0
    MarkupSafe: 1.1.1
    matplotlib: 3.3.2
    msgpack: 1.0.0
    netCDF4: 1.5.4
    networkx: 2.5
    numexpr: 2.7.3
    numpy: 1.19.2
    numpydoc: 1.1.0
    openvr: 1.14.1501
    packaging: 20.9
    ParmEd: 3.2.0
    parso: 0.7.1
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 7.2.0
    pip: 21.0.1
    pkginfo: 1.5.0.1
    prompt-toolkit: 3.0.18
    psutil: 5.7.2
    ptyprocess: 0.7.0
    pycollada: 0.7.1
    pydicom: 2.0.0
    Pygments: 2.7.1
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 2.4.7
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.1
    pytz: 2021.1
    pyzmq: 22.0.3
    qtconsole: 4.7.7
    QtPy: 1.9.0
    RandomWords: 0.3.0
    requests: 2.24.0
    scipy: 1.5.2
    setuptools: 50.3.2
    sfftk-rw: 0.6.7.dev1
    six: 1.15.0
    snowballstemmer: 2.1.0
    sortedcontainers: 2.2.2
    Sphinx: 3.2.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 1.0.3
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.4
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2020.9.3
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.0.5
    urllib3: 1.25.11
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.36.0
    wheel-filename: 1.2.0

Change History (2)

comment:1 by pett, 5 years ago

Component: Unassigned → Depiction
Owner: set to pett
Platform: → all
Project: → ChimeraX
Status: new → accepted
Summary: ChimeraX bug report submission → Color key: 'FontOption' object has no attribute '_callback'

comment:2 by pett, 5 years ago

Resolution: → fixed
Status: accepted → closed

Needed to prevent the initial creation of the option's menu from also making a callback.

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