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Opened 5 years ago
Closed 5 years ago
#4410 closed defect (fixed)
Color key: 'FontOption' object has no attribute '_callback'
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Depiction | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Linux-5.8.0-48-generic-x86_64-with-glibc2.14
ChimeraX Version: 1.2.dev202103240027 (2021-03-24 00:27:13 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
UCSF ChimeraX version: 1.2.dev202103240027 (2021-03-24)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /home/guozq/Music/qitan/job021/postprocess_masked.mrc
Opened postprocess_masked.mrc as #1, grid size 256,256,256, pixel 1.09, shown
at level 0.00917, step 1, values float32
> open /home/guozq/Music/qitan/LocalRes/job025/relion_locres.mrc
Opened relion_locres.mrc as #2, grid size 256,256,256, pixel 1.08, shown at
level 18.6, step 1, values float32
> ui tool show "Surface Color"
> color sample #1.1 map #2 palette #ff0000:#ffffff:#0000ff
Map values for surface "surface": minimum 2.16, mean 2.349, maximum 3.171
> color sample #1.1 map #2 palette #ff0000:#ffffff:#0000ff:#808080:#808080
Map values for surface "surface": minimum 2.16, mean 2.349, maximum 3.171
> color sample #1.1 map #2 palette
> 2.16,#0000ff:2.413,#7f7fff:2.665,#ffffff:2.918,#ff7f7f:3.171,#ff0000
Map values for surface "surface": minimum 2.16, mean 2.349, maximum 3.171
> set bgColor white
> volume #1 level 0.02923
> color sample #1.1 map #2 palette
> 2.16,#0000ff:2.413,#00ffff:2.665,#00ff00:2.918,#ffff00:3.171,#ff0000
Map values for surface "surface": minimum 2.16, mean 2.255, maximum 2.933
> color sample #1.1 map #2 palette
> 1.9,#0000ff:2,#00ffff:2.1,#00ff00:2.3,#ffff00:2.5,#ff0000
Map values for surface "surface": minimum 2.16, mean 2.255, maximum 2.933
> color sample #1.1 map #2 palette
> 2,#0000ff:2.1,#00ffff:2.2,#00ff00:2.4,#ffff00:2.8,#ff0000
Map values for surface "surface": minimum 2.16, mean 2.255, maximum 2.933
> color sample #1.1 map #2 palette
> 2,#0000ff:2.2,#00ffff:2.3,#00ff00:2.5,#ffff00:2.7,#ff0000
Map values for surface "surface": minimum 2.16, mean 2.255, maximum 2.933
> key rainbow :2.0 :2.2 :2.3 :2.5 :2.7
> ui tool show "Color Key"
> ui mousemode left "color key"
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax-daily/lib/python3.8/site-
packages/chimerax/core/toolshed/info.py", line 538, in start_tool
ti = api._api_caller.start_tool(api, session, self, tool_info)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.8/site-
packages/chimerax/core/toolshed/__init__.py", line 1253, in start_tool
return cls._get_func(api, "start_tool")(session, ti.name)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.8/site-
packages/chimerax/color_key/__init__.py", line 36, in start_tool
return ColorKeyTool(session, tool_name)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.8/site-
packages/chimerax/color_key/tool.py", line 215, in __init__
opt = opt_class(label, getattr(self.key, attr_name), self._opt_cb,
attr_name=attr_name, **kw)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.8/site-
packages/chimerax/ui/options/options.py", line 473, in __init__
super().__init__(*args, **kw)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.8/site-
packages/chimerax/ui/options/options.py", line 358, in __init__
super().__init__(*args, **kw)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.8/site-
packages/chimerax/ui/options/options.py", line 58, in __init__
self._make_widget(**kw)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.8/site-
packages/chimerax/ui/options/options.py", line 341, in _make_widget
self.remake_menu()
File "/usr/lib/ucsf-chimerax-daily/lib/python3.8/site-
packages/chimerax/ui/options/options.py", line 316, in remake_menu
self.make_callback()
File "/usr/lib/ucsf-chimerax-daily/lib/python3.8/site-
packages/chimerax/ui/options/options.py", line 169, in make_callback
if self._callback:
AttributeError: 'FontOption' object has no attribute '_callback'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax-daily/lib/python3.8/site-
packages/chimerax/surface/surfcolorgui.py", line 345, in _create_color_key
show_key(self.session, cmap)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.8/site-
packages/chimerax/color_key/cmd.py", line 177, in show_key
run(session,"ui tool show 'Color Key'")
File "/usr/lib/ucsf-chimerax-daily/lib/python3.8/site-
packages/chimerax/core/commands/run.py", line 36, in run
results = command.run(text, log=log, return_json=return_json)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.8/site-
packages/chimerax/core/commands/cli.py", line 2852, in run
result = ci.function(session, **kw_args)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.8/site-
packages/chimerax/ui/cmd.py", line 203, in ui_tool_show
bi.start_tool(session, name)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.8/site-
packages/chimerax/core/toolshed/info.py", line 543, in start_tool
raise ToolshedError(
chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Color Key
in bundle ChimeraX-ColorKey:
'FontOption' object has no attribute '_callback'
chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Color Key
in bundle ChimeraX-ColorKey:
'FontOption' object has no attribute '_callback'
File "/usr/lib/ucsf-chimerax-daily/lib/python3.8/site-
packages/chimerax/core/toolshed/info.py", line 543, in start_tool
raise ToolshedError(
See log for complete Python traceback.
OpenGL version: 4.5 (Core Profile) Mesa 20.2.6
OpenGL renderer: llvmpipe (LLVM 11.0.0, 256 bits)
OpenGL vendor: Mesa/X.org
Manufacturer: innotek GmbH
Model: VirtualBox
OS: Ubuntu 20.04 focal
Architecture: 64bit ELF
Virutal Machine: oracle
CPU: 4 Intel(R) Core(TM) i7-6700K CPU @ 4.00GHz
Cache Size: 8192 KB
Memory:
total used free shared buff/cache available
Mem: 23Gi 1.9Gi 17Gi 54Mi 4.3Gi 21Gi
Swap: 2.0Gi 0B 2.0Gi
Graphics:
00:02.0 VGA compatible controller [0300]: VMware SVGA II Adapter [15ad:0405]
Subsystem: VMware SVGA II Adapter [15ad:0405]
Kernel driver in use: vmwgfx
Locale: ('en_US', 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.9.0
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.12.5
cftime: 1.4.1
chardet: 3.0.4
ChimeraX-AddCharge: 1.0
ChimeraX-AddH: 2.1.4
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.12
ChimeraX-AtomicLibrary: 2.1
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.5
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.1
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.2.1
ChimeraX-CommandLine: 1.1.3
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.2.dev202103240027
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.1
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.1
ChimeraX-Help: 1.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.1
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-Label: 1.0
ChimeraX-LinuxSupport: 1.0
ChimeraX-ListInfo: 1.1
ChimeraX-Log: 1.1.1
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.0.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.1
ChimeraX-MDcrds: 2.2
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.3
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.0
ChimeraX-ModelPanel: 1.0.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0
ChimeraX-OpenCommand: 1.5
ChimeraX-PDB: 2.3.1
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.0.1
ChimeraX-ReadPbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.4
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.3
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0.1
ChimeraX-ToolshedUtils: 1.1
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.7
ChimeraX-uniprot: 2.1
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.21
decorator: 4.4.2
distlib: 0.3.1
distro: 1.5.0
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.17
imagecodecs: 2020.5.30
imagesize: 1.2.0
ipykernel: 5.3.4
ipython: 7.18.1
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.7
jupyter-core: 4.7.1
kiwisolver: 1.3.1
line-profiler: 2.1.2
lxml: 4.6.2
lz4: 3.1.0
MarkupSafe: 1.1.1
matplotlib: 3.3.2
msgpack: 1.0.0
netCDF4: 1.5.4
networkx: 2.5
numexpr: 2.7.3
numpy: 1.19.2
numpydoc: 1.1.0
openvr: 1.14.1501
packaging: 20.9
ParmEd: 3.2.0
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.2.0
pip: 21.0.1
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.18
psutil: 5.7.2
ptyprocess: 0.7.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.7.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.1
pytz: 2021.1
pyzmq: 22.0.3
qtconsole: 4.7.7
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.5.2
setuptools: 50.3.2
sfftk-rw: 0.6.7.dev1
six: 1.15.0
snowballstemmer: 2.1.0
sortedcontainers: 2.2.2
Sphinx: 3.2.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 1.0.3
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.4
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.9.3
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.0.5
urllib3: 1.25.11
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.36.0
wheel-filename: 1.2.0
Change History (2)
comment:1 by , 5 years ago
| Component: | Unassigned → Depiction |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Color key: 'FontOption' object has no attribute '_callback' |
comment:2 by , 5 years ago
| Resolution: | → fixed |
|---|---|
| Status: | accepted → closed |
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Needed to prevent the initial creation of the option's menu from also making a callback.