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Opened 5 years ago
Closed 5 years ago
#4386 closed defect (duplicate)
Transparent JPEG error
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Input/Output | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Linux-5.8.0-43-generic-x86_64-with-debian-bullseye-sid
ChimeraX Version: 1.1 (2020-09-09 22:22:27 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
UCSF ChimeraX version: 1.1 (2020-09-09)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open 2067_AB_IOD.pdb
Summary of feedback from opening 2067_AB_IOD.pdb
---
warnings | Duplicate atom serial number found: 3015
Duplicate atom serial number found: 3016
Duplicate atom serial number found: 3020
Duplicate atom serial number found: 3021
Duplicate atom serial number found: 3017
5 messages similar to the above omitted
Chain information for 2067_AB_IOD.pdb #1
---
Chain | Description
A | No description available
B | No description available
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
27 atoms, 29 bonds, 1 residue, 1 model selected
> delete atoms sel
> delete bonds sel
> select clear
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
27 atoms, 29 bonds, 1 residue, 1 model selected
> delete atoms sel
> delete bonds sel
> set bgColor white
> color light gray
> color #edd400ff
> color #c4a000ff
> color #ce5c00ff
> color #f57900ff
> color #cc0000ff
> color #ef2929ff
> color #c17d11ff
> color #e9b96eff
> color #edd400ff
> color #73d216ff
> color #8ae234ff
> color #edd400ff
> color #c3bd62ce
> color #c3bd62ce
> color #fa8072ff
> color #c3bd62ce
> color #c3bd62ce
> color #5c3566ff
> color #4e9a06ff
> color #73d216ff
> color #edd400ff
> color #fce94fff
> color #c4a000ff
> color #c3bd62ce
> color #c4a000ff
> show atoms
> show atoms
> hide atoms
> show cartoons
> hide cartoons
> hide cartoons
> show cartoons
> set bgColor white
> lighting simple
> lighting soft
> lighting full
> lighting simple
> preset cartoons/nucleotides ribbons/slabs
Changed 0 atom styles
Preset expands to these ChimeraX commands:
show nucleic
hide protein|solvent|H
surf hide
style (protein|nucleic|solvent) & @@draw_mode=0 stick
cartoon
cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
cartoon style ~(nucleic|strand) x round
cartoon style (nucleic|strand) x rect
nucleotides tube/slab shape box
> preset cartoons/nucleotides cylinders/stubs
Changed 0 atom styles
Preset expands to these ChimeraX commands:
show nucleic
hide protein|solvent|H
surf hide
style (protein|nucleic|solvent) & @@draw_mode=0 stick
cartoon
cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
cartoon style ~(nucleic|strand) x round
cartoon style (nucleic|strand) x rect
cartoon style protein modeh tube rad 2 sides 24 thick 0.6
cartoon style nucleic x round width 1.6 thick 1.6
nucleotides stubs
> preset cartoons/nucleotides licorice/ovals
Changed 0 atom styles
Preset expands to these ChimeraX commands:
show nucleic
hide protein|solvent|H
surf hide
style (protein|nucleic|solvent) & @@draw_mode=0 stick
cartoon
cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
cartoon style ~(nucleic|strand) x round
cartoon style (nucleic|strand) x rect
cartoon style protein modeh default arrows f x round width 1 thick 1
cartoon style nucleic x round width 1.6 thick 1.6
nucleotides tube/slab shape ellipsoid
> preset "initial styles" "original look"
Preset implemented in Python; no expansion to individual ChimeraX commands
available.
> preset "initial styles" sticks
Preset implemented in Python; no expansion to individual ChimeraX commands
available.
> preset "initial styles" cartoon
Preset implemented in Python; no expansion to individual ChimeraX commands
available.
> preset "initial styles" "space-filling (chain colors)"
Preset implemented in Python; no expansion to individual ChimeraX commands
available.
> preset "initial styles" "space-filling (single color)"
Preset implemented in Python; no expansion to individual ChimeraX commands
available.
> preset "molecular surfaces" "ghostly white"
Changed 5985 atom styles
Preset expands to these ChimeraX commands:
style (protein|nucleic|solvent) & @@draw_mode=0 stick
surface
color white targ s trans 80
> preset "molecular surfaces" "atomic coloring (transparent)"
Changed 0 atom styles
Preset expands to these ChimeraX commands:
style (protein|nucleic|solvent) & @@draw_mode=0 stick
surface
color fromatoms targ s trans 70
> preset "molecular surfaces" "chain id coloring (opaque)"
Changed 0 atom styles
Preset expands to these ChimeraX commands:
style (protein|nucleic|solvent) & @@draw_mode=0 stick
surface
color bychain targ s trans 0
> preset "overall look" publication
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes t
> preset cartoons/nucleotides ribbons/slabs
Changed 0 atom styles
Preset expands to these ChimeraX commands:
show nucleic
hide protein|solvent|H
surf hide
style (protein|nucleic|solvent) & @@draw_mode=0 stick
cartoon
cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
cartoon style ~(nucleic|strand) x round
cartoon style (nucleic|strand) x rect
nucleotides tube/slab shape box
> volume style mesh
No volumes specified
> volume showOutlineBox true
No volumes specified
> open
> /home/venkatareddy/MyLaptop/Rv2067c/structure/MT67_NaI_150mM_soak_5min/job20_Phased_map.map.ccp4
> format ccp4
Opened job20_Phased_map.map.ccp4, grid size 128,64,65, pixel 0.867,0.867,0.85,
shown at level 0.365, step 1, values float32
> volume style mesh
> volume style mesh
> select #2
2 models selected
> ~select #2
Nothing selected
> show #!2 target m
> volume #2 level 0.3103
> volume showOutlineBox true
> volume #2 style surface
> volume #2 style image
> volume #2 style mesh
> volume #2 step 2
> volume #2 step 1
> volume #2 change image level -0.1114,0 level 0.3645,0.8 level 0.9418,1
> volume #2 level 0.2596
> view clip false
> color #1#2.1#!2 yellow
> select #2
3 models selected
> color #2.1 light gray
> select clear
> select #1
5985 atoms, 6117 bonds, 22 pseudobonds, 789 residues, 2 models selected
> ~select #1
2 models selected
> select #2
3 models selected
> select #2
3 models selected
> hide #!2 target m
> show #!2 target m
> select clear
> volume planes z style image imageMode "full region"
> mousemode rightMode "move planes"
> volume #2 style image region all imageMode "tilted slab" tiltedSlabAxis
> 0,0,1 tiltedSlabOffset 27.62 tiltedSlabSpacing 0.8498 tiltedSlabPlaneCount
> 10
> mousemode rightMode "rotate slab"
> volume #2 orthoplanes xyz positionPlanes 64,32,32 style image region all
> mousemode rightMode "move planes"
> volume region all imageMode "full region"
> mousemode rightMode "crop volume"
> volume step 2
> volume step 1
> volume planes z style image imageMode "full region"
> mousemode rightMode "move planes"
> vop gaussian #2 sdev 2.6
> volume #!3 planes z style image imageMode "full region"
> mousemode rightMode "move planes"
> volume #!3 projectionMode 2d-xyz
> volume #!3 projectionMode 2d-xyz
> volume #!3 projectionMode 2d-xyz
> volume #2 level -0.1114,0 level 0.4497,0.1939 level 0.9418,1
> volume #2 level -0.3755,0.1515 level 0.4497,0.1939 level 0.9418,1
> volume #2 region 0,0,43,127,63,43
> volume #2 region 0,0,0,127,63,64 step 1
> volume #2 style surface region 0,0,0,127,63,64 step 1
> volume #2 region 0,0,0,127,63,64
> hide #!3 models
> hide #!2 models
> close #3
> close #2
> open
> /home/venkatareddy/MyLaptop/Rv2067c/structure/MT67_NaI_150mM_soak_5min/IOD_PDBCUR_set3_someremoved.pdb
Summary of feedback from opening
/home/venkatareddy/MyLaptop/Rv2067c/structure/MT67_NaI_150mM_soak_5min/IOD_PDBCUR_set3_someremoved.pdb
---
warnings | Ignored bad PDB record found on line 4
Ignored bad PDB record found on line 8
Duplicate atom serial number found: 1
Ignored bad PDB record found on line 24
Ignored bad PDB record found on line 25
Ignored bad PDB record found on line 26
Ignored bad PDB record found on line 28
> select #2
20 atoms, 19 residues, 1 model selected
> style sel sphere
Changed 20 atom styles
> select clear
> select #1
5985 atoms, 6117 bonds, 22 pseudobonds, 789 residues, 2 models selected
> select clear
> select #1
5985 atoms, 6117 bonds, 22 pseudobonds, 789 residues, 2 models selected
> ui tool show "Color Actions"
> color sel bychain
> color sel bychain
> color sel bypolymer
> select clear
> color bychain
> select #1
5985 atoms, 6117 bonds, 22 pseudobonds, 789 residues, 2 models selected
> color sel bychain
> select #2
20 atoms, 19 residues, 1 model selected
> select #1
5985 atoms, 6117 bonds, 22 pseudobonds, 789 residues, 2 models selected
> select #2
20 atoms, 19 residues, 1 model selected
> color sel bypolymer
> color sel bychain
> close #2
> select /B:72
11 atoms, 11 bonds, 1 residue, 1 model selected
> select up
61 atoms, 62 bonds, 8 residues, 1 model selected
> select up
2989 atoms, 3054 bonds, 396 residues, 2 models selected
> color (#!1 & sel) orange
> select #1
5985 atoms, 6117 bonds, 22 pseudobonds, 789 residues, 2 models selected
> ui tool show "Color Actions"
> color sel bychain
> color sel bychain
> ui tool show "Color Actions"
> color sel gold
> open
> /home/venkatareddy/MyLaptop/Rv2067c/structure/MT67_NaI_150mM_soak_5min/IOD_PDBCUR_set3_someremoved.pdb
Summary of feedback from opening
/home/venkatareddy/MyLaptop/Rv2067c/structure/MT67_NaI_150mM_soak_5min/IOD_PDBCUR_set3_someremoved.pdb
---
warnings | Ignored bad PDB record found on line 4
Ignored bad PDB record found on line 8
Duplicate atom serial number found: 1
Ignored bad PDB record found on line 24
Ignored bad PDB record found on line 25
Ignored bad PDB record found on line 26
Ignored bad PDB record found on line 28
> select #2
20 atoms, 19 residues, 1 model selected
> style sel sphere
Changed 20 atom styles
> ~select #2
Nothing selected
> select #1
5985 atoms, 6117 bonds, 22 pseudobonds, 789 residues, 2 models selected
> ui tool show "Color Actions"
> color sel bychain
> color sel dark green
> color sel black
> color sel white
> color sel ivory
> color sel light yellow
> color sel snow
> color sel floral white
> color sel lemon chiffon
> color sel lemon chiffon
> color sel cornsilk
> color sel seashell
> color sel seashell
> color sel lavender blush
> color sel papaya whip
> color sel blanched almond
> color sel misty rose
> ~select #1
2 models selected
> color navajo white
> select #2
20 atoms, 19 residues, 1 model selected
> color sel magenta
> color sel medium violet red
> color sel dark magenta
> select #1
5985 atoms, 6117 bonds, 22 pseudobonds, 789 residues, 2 models selected
> color sel khaki
> ~select #1
2 models selected
> select #1/B:308
5 atoms, 4 bonds, 1 residue, 1 model selected
> select up
28 atoms, 27 bonds, 4 residues, 2 models selected
> select up
2989 atoms, 3054 bonds, 396 residues, 2 models selected
> color sel violet
> color sel light green
> color sel light pink
> color sel orange
> color sel gold
> color sel sandy brown
> color sel wheat
> color sel light pink
> select clear
> select #1/B:401
7 atoms, 6 bonds, 1 residue, 1 model selected
> select up
17 atoms, 16 bonds, 3 residues, 2 models selected
> select up
2989 atoms, 3054 bonds, 396 residues, 2 models selected
> ~select #1.3
3054 bonds, 2 models selected
> select #1.3
2989 atoms, 396 residues, 1 model selected
> color sel violet
> color sel lavender
> ~select #1.3
1 model selected
> select #1.2
2996 atoms, 393 residues, 1 model selected
> color sel papaya whip
> color sel navajo white
> select #1.3
2989 atoms, 396 residues, 1 model selected
> color sel light sky blue
> color sel aquamarine
> ~select #1.3
1 model selected
> select #1.3
2989 atoms, 396 residues, 1 model selected
> color sel powder blue
> color sel light pink
> ~select #1.3
1 model selected
> select #1.3
2989 atoms, 396 residues, 1 model selected
> select #1.2
2996 atoms, 393 residues, 1 model selected
> select #1
5985 atoms, 6117 bonds, 22 pseudobonds, 789 residues, 2 models selected
> color sel bychain
> ~select #1
2 models selected
> select #1.1
22 pseudobonds, 1 model selected
> select #1.2
2996 atoms, 393 residues, 1 model selected
> color sel cornsilk
> ~select #1.2
1 model selected
> color khaki
> select #1.3
2989 atoms, 396 residues, 1 model selected
> color sel khaki
> select #2
20 atoms, 19 residues, 1 model selected
> color sel purple
> color sel dark magenta
> color sel dark orchid
> color sel dark magenta
> select #1.3
2989 atoms, 396 residues, 1 model selected
> color sel old lace
> color sel light pink
> color sel pale green
> color sel light green
> color sel dark sea green
> color sel yellow
> color sel gold
> color sel orange
> color sel dark orange
> color sel green yellow
> color sel goldenrod
> color sel sandy brown
> color sel red
> color sel yellow green
> color sel dark khaki
> ~select #1.3
1 model selected
> select #1.3
2989 atoms, 396 residues, 1 model selected
> color sel light pink
> ~select #1.3
1 model selected
> save
> /home/venkatareddy/MyLaptop/Rv2067c/structure/MT67_NaI_150mM_soak_5min/2067c_ASU_IOD.cxs
> save
> /home/venkatareddy/MyLaptop/Rv2067c/structure/MT67_NaI_150mM_soak_5min/2067c_ASU_IOD.png
> width 1933 height 1017 supersample 3
> save 2067c_ASU_IOD_2.png, transparentBackground true
No known data format for file suffix '.png,'
> save 2067c_ASU_IOD_2, format png, transparentBackground true
Unknown data format: 'png,'
> save 2067c_ASU_IOD_2, format PNG, transparentBackground true
Unknown data format: 'PNG,'
> save 2067c_ASU_IOD_2, format PNG, transparentBackground true
Unknown data format: 'PNG,'
> save 2067c_ASU_IOD_2, format PNG, transparentBackground true
Unknown data format: 'PNG,'
> save 2067c_ASU_IOD_2
Cannot determine format for '2067c_ASU_IOD_2'
> save 2067c_ASU_IOD_2.png
> save 2067c_ASU_IOD_2.png, transparentBackground true
No known data format for file suffix '.png,'
> save 2067c_ASU_IOD_2.png [transparentBackground true]
Expected a keyword
> save 2067c_ASU_IOD_2.png [transparentBackground=true]
Expected a keyword
> save 2067c_ASU_IOD_2.png, transparentBackground=true
No known data format for file suffix '.png,'
> save 2067c_ASU_IOD_2.png [transparentBackground=true]
Expected a keyword
> save filename [ format png ] [[ width 1000 ][ height 400 ] | pixelSize 0.4 ]
> [ supersample 3 ] [ transparentBackground true]
Cannot determine format for 'filename'
> save filename [ format jpeg ] [[ width 1000 ][ height 400 ] | pixelSize 0.4
> ] [ supersample 3 ] [ transparentBackground true]
Cannot determine format for 'filename'
> save filename.jpeg [ format jpeg ] [[ width 1000 ][ height 400 ] | pixelSize
> 0.4 ] [ supersample 3 ] [ transparentBackground true]
Expected a keyword
> save filename.jpeg [format jpeg ] [[ width 1000 ][ height 400 ] | pixelSize
> 0.4 ] [ supersample 3 ] [ transparentBackground true]
Expected a keyword
> save filename.jpeg (format jpeg) ((width 1000)( height 400 ) | pixelSize 0.4
> ] ( supersample 3 ) ( transparentBackground true)
Expected a keyword
> save filename.jpeg, transparentBackground=true
No known data format for file suffix '.jpeg,'
> save filename, format=jpeg transparentBackground=true
Cannot determine format for 'filename,'
> save filename, format=jpeg transparentBackground=true
Cannot determine format for 'filename,'
> save filename, format=jpeg, transparentBackground=true
Cannot determine format for 'filename,'
> save filename.jpeg, format=jpeg, transparentBackground=true
No known data format for file suffix '.jpeg,'
> save filename.jpeg
> save /home/venkatareddy/Desktop/image1.png supersample 3
> save filename.jpeg transparentBackground true
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/PIL/JpegImagePlugin.py", line 612, in _save
rawmode = RAWMODE[im.mode]
KeyError: 'RGBA'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/cmd_line/tool.py", line 275, in execute
cmd.run(cmd_text)
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/core/commands/cli.py", line 2805, in run
result = ci.function(session, **kw_args)
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/save_command/cmd.py", line 66, in cmd_save
Command(session, registry=registry).run(provider_cmd_text, log=log)
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/core/commands/cli.py", line 2805, in run
result = ci.function(session, **kw_args)
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/save_command/cmd.py", line 79, in provider_save
mgr).save(session, path, **provider_kw)
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/image_formats/__init__.py", line 24, in save
save_image(session, path, format_name, **kw)
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/image_formats/save.py", line 116, in save_image
i.save(path, format_name, **metadata)
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/PIL/Image.py", line
2134, in save
save_handler(self, fp, filename)
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/PIL/JpegImagePlugin.py", line 614, in _save
raise OSError("cannot write mode %s as JPEG" % im.mode)
OSError: cannot write mode RGBA as JPEG
OSError: cannot write mode RGBA as JPEG
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/PIL/JpegImagePlugin.py", line 614, in _save
raise OSError("cannot write mode %s as JPEG" % im.mode)
See log for complete Python traceback.
OpenGL version: 4.6 (Core Profile) Mesa 20.2.6
OpenGL renderer: Mesa Intel(R) HD Graphics 520 (SKL GT2)
OpenGL vendor: Intel
Manufacturer: LENOVO
Model: 20FRS0WL14
OS: Ubuntu 20.04 focal
Architecture: 64bit ELF
CPU: 4 Intel(R) Core(TM) i7-6600U CPU @ 2.60GHz
Cache Size: 4096 KB
Memory:
total used free shared buff/cache available
Mem: 15Gi 4.0Gi 4.5Gi 1.7Gi 7.0Gi 9.5Gi
Swap: 15Gi 0.0Ki 15Gi
Graphics:
00:02.0 VGA compatible controller [0300]: Intel Corporation Skylake GT2 [HD Graphics 520] [8086:1916] (rev 07)
Subsystem: Lenovo Skylake GT2 [HD Graphics 520] [17aa:2238]
Kernel driver in use: i915
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.9
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.8.0
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.6.20
chardet: 3.0.4
ChimeraX-AddH: 2.1.3
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.6.1
ChimeraX-AtomSearch: 2.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.0.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.0
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.0
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.0
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-CommandLine: 1.1.3
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.1
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.0.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-DataFormats: 1.0
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.0
ChimeraX-Help: 1.0
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.0
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0
ChimeraX-Label: 1.0
ChimeraX-LinuxSupport: 1.0
ChimeraX-ListInfo: 1.0
ChimeraX-Log: 1.1.1
ChimeraX-LookingGlass: 1.1
ChimeraX-Map: 1.0.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.1
ChimeraX-MDcrds: 2.0
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.0
ChimeraX-mmCIF: 2.2
ChimeraX-MMTF: 2.0
ChimeraX-Modeller: 1.0
ChimeraX-ModelPanel: 1.0
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.0
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0
ChimeraX-OpenCommand: 1.2.1
ChimeraX-PDB: 2.1
ChimeraX-PDBBio: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0
ChimeraX-PubChem: 2.0
ChimeraX-Read-Pbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.0
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.2
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.0.4
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.0
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0
ChimeraX-ToolshedUtils: 1.0
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.2.3
ChimeraX-uniprot: 2.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.20
decorator: 4.4.2
distlib: 0.3.1
distro: 1.5.0
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.16
imagecodecs: 2020.5.30
imagecodecs-lite: 2020.1.31
imagesize: 1.2.0
ipykernel: 5.3.0
ipython: 7.15.0
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.3
jupyter-core: 4.6.3
kiwisolver: 1.2.0
line-profiler: 2.1.2
lxml: 4.5.1
MarkupSafe: 1.1.1
matplotlib: 3.2.1
msgpack: 1.0.0
netifaces: 0.10.9
networkx: 2.4
numexpr: 2.7.1
numpy: 1.18.5
numpydoc: 1.0.0
openvr: 1.12.501
packaging: 20.4
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.1.2
pip: 20.2.2
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.7
psutil: 5.7.0
ptyprocess: 0.6.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.6.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.12.3
PyQt5-sip: 4.19.19
PyQtWebEngine-commercial: 5.12.1
python-dateutil: 2.8.1
pytz: 2020.1
pyzmq: 19.0.2
qtconsole: 4.7.4
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.4.1
setuptools: 49.4.0
sfftk-rw: 0.6.6.dev0
six: 1.15.0
snowballstemmer: 2.0.0
sortedcontainers: 2.2.2
Sphinx: 3.1.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 1.0.3
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.4
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.6.3
tinyarray: 1.2.2
tornado: 6.0.4
traitlets: 5.0.4
urllib3: 1.25.10
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.34.2
Change History (2)
comment:1 by , 5 years ago
| Component: | Unassigned → Input/Output |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Transparent JPEG error |
comment:2 by , 5 years ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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