Timeline



Dec 15, 2020:

10:26 PM Ticket #4059 (Crash popping up menu, two screens, macOS) created by chimerax-bug-report@…
[…]
6:53 PM Ticket #4058 (Volume Viewer: RuntimeWarning: overflow encountered in log) closed by Tom Goddard
fixed: Fixed. I changed the volume viewer code to use float64 for counts …
5:41 PM Ticket #4058 (Volume Viewer: RuntimeWarning: overflow encountered in log) created by goddard@…
[…]
4:36 PM Ticket #4057 (Toolshed using internal UI API) created by chimerax-bug-report@…
[…]
3:40 PM Ticket #3974 (Something broke in the PBD look up) closed by pett
can't reproduce: Are you certain that there isn't some other output file from Robetta …
12:47 PM 2020-12-17 edited by Tom Ferrin
(diff)
10:15 AM 2020-12-17 created by Tom Goddard
10:11 AM DeveloperMeetings edited by Tom Goddard
(diff)
9:24 AM Ticket #4056 (Toolshed internal UI API) closed by pett
duplicate: Already fixed I believe.
8:06 AM Ticket #4056 (Toolshed internal UI API) created by chimerax-bug-report@…
[…]

Dec 14, 2020:

4:32 PM Ticket #3853 (Bug in chimeraX 1.1 version) closed by Greg Couch
can't reproduce: No response from request for more information.
3:06 PM Ticket #4055 (Problem with open-command providers after bundle reinstall) created by Tony Schaefer
[…]
3:00 PM Ticket #4010 (Adding second residue to Chain makes new Chain) closed by pett
fixed: Apparently already fixed in the daily build. However, the daily build …
1:47 PM Ticket #4054 (Cannot make a tool undockable) closed by Tom Goddard
fixed: Fixed. Bug introduced when converting PyQt5 to PySide2. Dockable and …
1:26 PM Ticket #4052 (Crash destroying/disconnecting screen) closed by Tom Goddard
duplicate: Crash when second screen disconnected. I guess ChimeraX was on an …
1:22 PM Ticket #4050 (Crash changing screens) closed by Tom Goddard
duplicate: Duplicate of #3682. Fixed in daily builds.
12:46 PM Ticket #4054 (Cannot make a tool undockable) created by Tony Schaefer
[…]
12:02 PM Ticket #3383 (Redirect Python logging to the ChimeraX log) closed by pett
fixed: Removed the explicit (and less flexible) support for Python logging …
11:36 AM Ticket #4049 (Crash posting popup menu on dual monitor) closed by pett
can't reproduce

Dec 13, 2020:

1:55 AM Ticket #4053 (ISOLDE: _change_selected_model: Spgr_descr: No such HM symbol) created by chimerax-bug-report@…
[…]

Dec 12, 2020:

4:38 PM Ticket #4052 (Crash destroying/disconnecting screen) created by susan.lea@…
[…]
2:22 PM WikiStart edited by Tom Goddard
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2:19 PM WikiStart edited by Tom Goddard
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2:18 PM WikiStart edited by Tom Goddard
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2:18 PM Funding created by Tom Goddard
10:47 AM Ticket #4051 (Open imod contours: TypeError: int expected instead of float) closed by Tom Goddard
fixed: Fixed. Code tried to set contour link color using float rgba instead …
10:44 AM Ticket #4051 (Open imod contours: TypeError: int expected instead of float) created by goddard@…
[…]
2:38 AM Ticket #4050 (Crash changing screens) created by chimerax-bug-report@…
[…]

Dec 11, 2020:

9:20 PM Ticket #4049 (Crash posting popup menu on dual monitor) created by chimerax-bug-report@…
[…]
6:47 PM Ticket #4048 (Replace PyOpenGL with Qt OpenGL API) created by Tom Goddard
Might want to drop PyOpenGL and call OpenGL functions through PySide2. …
5:18 PM Ticket #4027 (AddH wheel on Toolshed won't install: wheel filename has py38 instead ...) closed by pett
fixed: The AddH wheel is now just "py3".
5:14 PM Ticket #4047 (Crash while garbage collecting during object allocation) closed by pett
duplicate: Duplicate of #3949
5:00 PM Ticket #3986 (Volume Viewer step/style menus only accept press in middle macOS, Qt 5.15) closed by Tom Goddard
fixed: Fixed. Removed setting style sheet on volume view step and style menu …
2:16 PM Ticket #3946 (Make OpenFileNameArg check that file exists) closed by pett
fixed: The various open/save arg types now have a 'check_existence' class …
12:57 PM Ticket #4047 (Crash while garbage collecting during object allocation) created by chimerax-bug-report@…
[…]
12:02 PM Ticket #4046 (Toolshed error in "already installed" error message) closed by pett
duplicate: Hi Brian, Thanks for reporting this problem. The Toolshed is trying …
11:56 AM Ticket #4046 (Toolshed error in "already installed" error message) created by ba553@…
[…]
10:11 AM Ticket #4044 (MemoryError restoring map from session) closed by Tom Goddard
nonchimerax: Out of memory. Not sure if you are showing a huge structure or if you …
10:06 AM Ticket #4043 (Graphics hardware encountered an error and was reset) closed by Tom Goddard
nonchimerax: Buggy Apple graphics driver: "Graphics hardware encountered an error …
9:49 AM Ticket #4045 (Toolshed error in "already installed" error message) closed by pett
duplicate
9:40 AM Ticket #4042 (Crash while garbage collecting during object allocation) closed by pett
duplicate: Duplicate of #3949
5:26 AM Ticket #4045 (Toolshed error in "already installed" error message) created by chimerax-bug-report@…
[…]
2:06 AM Ticket #4044 (MemoryError restoring map from session) created by anaschwarzer@…
[…]
1:53 AM Ticket #4043 (Graphics hardware encountered an error and was reset) created by raobing2015@…
[…]

Dec 10, 2020:

8:38 PM Ticket #4042 (Crash while garbage collecting during object allocation) created by chimerax-bug-report@…
[…]
8:33 PM Ticket #1635 (Replace PyQt5 with PySide2) closed by Tom Goddard
fixed: Done. The switch to PySide2 was done a weeks ago in daily builds and …
8:10 PM Ticket #3760 (Startup warning: Unable to load numpy_formathandler accelerator from ...) reopened by Tom Goddard
On Windows binary wheel for PyOpenGL-accelerate for Python 3.8 is …
7:40 PM 2020-12-10 edited by Tom Goddard
(diff)
7:38 PM 2020-12-10 edited by Tom Goddard
(diff)
12:06 PM Ticket #4041 ("sel" specifier vs. "select" keyword) created by Tristan Croll
[…]
11:43 AM Ticket #4040 (Crash in QtWebEngineCore) created by rsarsam@…
[…]
11:18 AM Ticket #4033 (AddH not installable into ChimeraX 1.1 due to "py38" in wheel name) closed by pett
fixed
11:15 AM Ticket #4037 (Could not find a version that satisfies the requirement ...) closed by pett
fixed: Hi Michael, Thanks for reporting this problem. We believe it is …
10:56 AM Ticket #4039 (Splash screen crash report that was not a crash) closed by Tom Goddard
can't reproduce: The Python traceback is when calling sess.ui.splash_info("Starting …
10:41 AM Ticket #4039 (Splash screen crash report that was not a crash) created by goddard@…
[…]
10:28 AM 2020-12-10 edited by Tom Goddard
(diff)
10:25 AM 2020-12-10 created by Tom Goddard
10:19 AM DeveloperMeetings edited by Tom Goddard
(diff)
9:52 AM Ticket #4038 (ISOLDE: OpenMM: residue_graph: edges should be a n x 2 array of ...) closed by pett
duplicate: Duplicate of #4016
5:26 AM Ticket #4038 (ISOLDE: OpenMM: residue_graph: edges should be a n x 2 array of ...) created by chimerax-bug-report@…
[…]
3:45 AM Ticket #4037 (Could not find a version that satisfies the requirement ...) created by weberm@…
[…]

Dec 9, 2020:

6:14 PM Ticket #3383 (Redirect Python logging to the ChimeraX log) reopened by pett
From an email by Tom Goddard: ChimeraX startup is currently showing …
5:40 PM Ticket #3760 (Startup warning: Unable to load numpy_formathandler accelerator from ...) closed by Tom Goddard
fixed: Fixed. PyOpenGL-accelerate only compiles the numpy_formathandler …
1:37 PM Ticket #4036 (crash in set_alt_loc) closed by pett
fixed: One of the set_alt_loc() routines hadn't been marked up as capable of …
12:29 PM Ticket #4036 (crash in set_alt_loc) created by chimerax-bug-report@…
[…]

Dec 8, 2020:

7:42 PM Ticket #4035 (Problem installing ISOLDE) created by mh5416@…
[…]
7:34 PM Ticket #3898 (Toolshed Python 3.8 bundle won't install in Python 3.7) closed by Greg Couch
fixed
6:55 PM Ticket #4034 (Error adding tool in favorites menu, PySide2 issue) closed by Tom Goddard
fixed: Fixed. Some code to handle PySide2 QAction signal argument …
6:48 PM Ticket #4034 (Error adding tool in favorites menu, PySide2 issue) created by goddard@…
[…]
5:20 PM Ticket #4032 ("toolshed install" not allowing upgrade) closed by Greg Couch
fixed: The fix is the same as #3996. "toolshed install" used to need the …
2:53 PM Ticket #4029 (glClear: invalid enumerant) closed by Tom Goddard
nonchimerax: This error is likely a bad graphics driver. Possibly your machine …
2:28 PM Ticket #4030 (Crash in graphics driver) closed by Tom Goddard
nonchimerax: Apple graphics driver bug. "Graphics hardware encountered an error …
2:27 PM Ticket #4028 (Crash in shader / graphics driver) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash. "Graphics hardware encountered an …
1:15 PM Ticket #4033 (AddH not installable into ChimeraX 1.1 due to "py38" in wheel name) created by chimerax-bug-report@…
[…]
1:13 PM Ticket #4031 (self.main_window is None) closed by pett
can't reproduce: Probably the "topLevelChanged" signal fired after the tool was …
11:45 AM Ticket #4032 ("toolshed install" not allowing upgrade) created by pett
[…]
9:58 AM Ticket #4013 (macOS daily build, "developer can't be verified", even though ...) closed by Tom Goddard
fixed: Fixed. New PySide2 releases may add or remove external non-system …
8:44 AM Ticket #4031 (self.main_window is None) created by chimerax-bug-report@…
[…]
8:12 AM Ticket #4030 (Crash in graphics driver) created by chimerax-bug-report@…
[…]
5:55 AM Ticket #4029 (glClear: invalid enumerant) created by yael.sivron@…
[…]

Dec 7, 2020:

5:57 PM Ticket #4028 (Crash in shader / graphics driver) created by chimerax-bug-report@…
[…]
5:51 PM Ticket #4026 (Contour level mouse mode: UnboundLocalError: local variable 'levels') closed by Tom Goddard
fixed: Fixed. Volume was shown but surface and image models were …
5:36 PM Ticket #4025 (macOS: Graphics hardware encountered an error) closed by Tom Goddard
nonchimerax: Apple graphics driver bug.
5:35 PM Ticket #4024 (macOS: Graphics hardware encountered an error) closed by Tom Goddard
nonchimerax: Apple graphics driver bug.
6:22 AM Ticket #4027 (AddH wheel on Toolshed won't install: wheel filename has py38 instead ...) created by Tristan Croll
[…]

Dec 6, 2020:

11:25 AM Ticket #4026 (Contour level mouse mode: UnboundLocalError: local variable 'levels') created by chimerax-bug-report@…
[…]

Dec 5, 2020:

6:26 PM Ticket #4025 (macOS: Graphics hardware encountered an error) created by chimerax-bug-report@…
[…]
6:20 PM Ticket #4024 (macOS: Graphics hardware encountered an error) created by chimerax-bug-report@…
[…]
7:05 AM Ticket #4023 (Better error handling on web service failure) created by chimerax-bug-report@…
[…]

Dec 4, 2020:

8:00 PM Ticket #4022 (Testing crash reporting on Linux) closed by Tom Goddard
fixed: Working.
7:57 PM Ticket #4022 (Testing crash reporting on Linux) created by goddard@…
[…]
7:49 PM Ticket #4021 (Testing crash reporting on Windows) closed by Tom Goddard
fixed: Works. Will be interesting to see how many crashes get reported on …
7:46 PM Ticket #4021 (Testing crash reporting on Windows) created by goddard@…
[…]
7:33 PM Ticket #4020 (Testing adding python tracebacks to crash reports) closed by Tom Goddard
fixed: Python tracebacks in crash report working on Mac.
7:30 PM Ticket #4020 (Testing adding python tracebacks to crash reports) created by goddard@…
[…]
11:06 AM Ticket #4019 (Allow surface and mesh levels in Volume Viewer) created by daniel.larsson@…
On 4 Dec 2020, at 15:08, Daniel Larsson wrote: Hi Elaine, Thank you …
9:03 AM Ticket #4017 (Crash showing tooltip) closed by pett
can't reproduce
8:57 AM Ticket #4014 (ISOLDE installed but not Clipper dependency) closed by pett
duplicate: Duplicate of #4015
6:10 AM Ticket #4018 (ISOLDE: OpenMM: find_glycan_template_name_and_link: multiple bonds ...) created by kartik.manne@…
[…]
6:09 AM Ticket #4017 (Crash showing tooltip) created by chimerax-bug-report@…
[…]
4:12 AM Ticket #4016 (ISOLDE: OpenMM: residue_graph: edges should be a n x 2 array of ...) created by chimerax-bug-report@…
[…]
3:53 AM Ticket #4015 (ISOLDE installed but not Clipper dependency) created by l.loeff@…
[…]
3:52 AM Ticket #4014 (ISOLDE installed but not Clipper dependency) created by chimerax-bug-report@…
[…]

Dec 3, 2020:

4:09 PM Ticket #4013 (macOS daily build, "developer can't be verified", even though ...) created by goddard@…
[…] Screen Shot 2020-12-03 at 4.06.17 PM.png
2:24 PM Ticket #4012 (Error restoring session with embedded maps; text-color issue in bug ...) created by grahamj@…
[…] withMaps.cxs
2:23 PM 2020-12-3 edited by Tom Goddard
(diff)
2:22 PM 2020-12-3 edited by Tom Goddard
(diff)
1:50 PM Ticket #4011 (add ability to update bundle metadata of bundles in toolshed) created by Greg Couch
When a bundle on the toolshed has incorrect dependencies, eg., …
1:05 PM 2020-12-3 edited by Scooter Morris
(diff)
1:04 PM 2020-12-3 edited by Scooter Morris
(diff)
1:01 PM 2020-12-3 edited by Scooter Morris
(diff)
12:55 PM 2020-12-3 edited by Scooter Morris
(diff)
12:54 PM 2020-12-3 edited by Scooter Morris
(diff)
11:02 AM Ticket #3984 (ViewDockX: Uncaught TypeError) closed by pett
fixed: Was trying to scroll to show the top active row, and in this case …
10:58 AM NeteSOW edited by Tom Goddard
(diff)
9:36 AM 2020-12-3 edited by Tom Goddard
(diff)
9:36 AM 2020-12-3 edited by Tom Goddard
(diff)
9:03 AM Ticket #4009 (Double click open of mmCIF fails on Linux) closed by pett
fixed: Good ol' Linux. I have committed a fix/workaround -- which I can't …
7:13 AM Ticket #4010 (Adding second residue to Chain makes new Chain) created by daniel.palma.i@…
[…] pseudobond_test.py

Dec 2, 2020:

9:46 PM 2020-12-3 edited by Tom Goddard
(diff)
9:27 PM Ticket #4009 (Double click open of mmCIF fails on Linux) created by goddard@…
[…]
8:53 PM 2020-12-3 created by Tom Goddard
8:48 PM DeveloperMeetings edited by Tom Goddard
(diff)
6:25 PM Ticket #4008 (Unable to install bundle with mdtraj (source code package) dependency) created by jacknicoludis@…
[…]
9:20 AM Ticket #4006 (AddH: can't form new hydrogen name) closed by pett
duplicate: Duplicate of #2717
7:56 AM Ticket #4007 (RFE: sym command "replace true" or "keepOriginal false" option) created by Elaine Meng
Would like option that modifies "copies true" to also close the …
7:32 AM Ticket #4006 (AddH: can't form new hydrogen name) created by chimerax-bug-report@…
[…]
2:48 AM Ticket #4005 ('Alignment' object has no attribute '_headers') created by zhaozhennan15@…
[…]

Dec 1, 2020:

7:20 PM Ticket #3997 (Change sym command default to avoid confusing graphical clones) closed by Tom Goddard
fixed: Fixed. Default for copies option is now true for 12 or fewer copies …
6:55 PM Ticket #4004 (sym command copies true option ignored if newModel true option used) closed by Tom Goddard
fixed: Fixed. Not sure why the code mishandled this case. Must have been …
6:51 PM Ticket #4004 (sym command copies true option ignored if newModel true option used) created by goddard@…
[…]
5:30 PM Ticket #3990 (EnumOf using values instead of labels in error message) closed by Greg Couch
fixed: Fixed the error message to use the ids.
5:03 PM Ticket #3993 (issue with AtomicShapeDrawing.add_shape) closed by Greg Couch
fixed: FYI, if you are adding lots of shapes, it is much more efficient to …
4:39 PM Ticket #3996 (PyPi dependencies not installed by "devel install".) closed by Greg Couch
fixed: Make it so both the bundle's name *and* its version have to be the …
4:06 PM ChangeLog edited by Tom Goddard
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4:01 PM ChangeLog edited by Tom Goddard
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3:58 PM ChangeLog edited by Tom Goddard
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3:55 PM ChangeLog edited by Tom Goddard
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3:52 PM ChangeLog edited by Tom Goddard
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3:44 PM ChangeLog edited by Tom Goddard
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3:44 PM ChangeLog edited by Tom Goddard
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3:42 PM ChangeLog edited by Tom Goddard
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3:39 PM ChangeLog edited by Tom Goddard
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3:36 PM ChangeLog edited by Tom Goddard
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3:35 PM ChangeLog edited by Tom Goddard
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3:31 PM ChangeLog edited by Tom Goddard
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3:28 PM ChangeLog edited by Tom Goddard
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3:25 PM ChangeLog edited by Tom Goddard
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3:24 PM ChangeLog edited by Tom Goddard
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3:20 PM ChangeLog edited by Tom Goddard
(diff)
1:28 PM Ticket #4003 (OpenMM OpenCL crash on Mac in Intel graphics driver) created by chimerax-bug-report@…
[…]
11:32 AM ChangeLog edited by Tom Goddard
(diff)
11:19 AM Ticket #4002 (LZ4 compression instead of gzip for maps in session files) closed by Tom Goddard
fixed: Fixed. Made maps included in sessions not compressed. Overall …
10:37 AM Ticket #4001 (Don't base64 encode maps in session files) closed by Tom Goddard
fixed: Fixed. Session reading handles both base64 encoded older sessions and …
10:34 AM Ticket #4002 (LZ4 compression instead of gzip for maps in session files) created by goddard@…
[…]
10:30 AM Ticket #4001 (Don't base64 encode maps in session files) created by goddard@…
[…]

Nov 30, 2020:

9:47 PM Ticket #4000 (SEQCROW uses deprecated PyQt5 imports) created by goddard@…
[…]
6:40 PM Ticket #3999 (Toolshed offers to install ISOLDE for wrong Python version then fails) created by goddard@…
[…]
6:37 PM Ticket #3998 (TEMPy does not start with ChimeraX 1.1) reopened by Tom Goddard
Accidentally set this to fixed. It is not fixed until a new version …
6:34 PM Ticket #3998 (TEMPy does not start with ChimeraX 1.1) closed by Tom Goddard
fixed: Thomas Mulvaney says TEMPy does not work in anything newer than …
6:25 PM Ticket #3998 (TEMPy does not start with ChimeraX 1.1) created by goddard@…
[…]
5:22 PM Ticket #3383 (Redirect Python logging to the ChimeraX log) closed by pett
fixed: Okay, standard Python logging now redirected. Mostly used the …
3:44 PM Ticket #3992 (vr roomCamera: CompositorError_TextureUsesUnsupportedFormat) closed by Tom Goddard
can't reproduce: Cool to see someone is trying VR with a RealSense camera I guess to …
3:25 PM Ticket #3936 (Hybrid36 issues) closed by pett
fixed: Hi Chris, Thanks for reporting this problem. Before Hybrid-36 was …
2:54 PM Ticket #3997 (Change sym command default to avoid confusing graphical clones) created by Tom Goddard
As Elaine points out and user Yakhomba experienced the sym command …
2:36 PM Ticket #3996 (PyPi dependencies not installed by "devel install".) created by mulvaney@…
Command devel install of a bundle does not install PyPi dependencies …
11:36 AM Ticket #3995 (MemoryError writing compressed session) closed by Tom Goddard
nonchimerax: The ChimeraX error messages you ran out of memory saving a session. …
11:20 AM Ticket #3995 (MemoryError writing compressed session) created by anaschwarzer@…
[…]
9:44 AM Ticket #3991 (temp file collision) closed by pett
fixed: Hi Tristan, This has been fixed for about 2.5 months now, but it's …

Nov 29, 2020:

4:27 PM Ticket #3994 (Crash in timer callback) created by nzhang24@…
[…]

Nov 28, 2020:

12:01 AM Ticket #3993 (issue with AtomicShapeDrawing.add_shape) created by Tony Schaefer
[…]

Nov 27, 2020:

9:03 PM Ticket #3992 (vr roomCamera: CompositorError_TextureUsesUnsupportedFormat) created by chimerax-bug-report@…
[…]
1:36 PM Ticket #3991 (temp file collision) created by Tristan Croll
[…]
11:06 AM Ticket #3989 ("volume boxes" attempts to a model to scene twice) closed by Tom Goddard
fixed: Fixed in tonight's ChimeraX daily builds. Volume boxes command was …
10:51 AM Ticket #3972 (ChimeraX OpenGL startup issue after updating system to Ubuntu 20.04) closed by Tom Goddard
nonchimerax: Thanks for the info. Glad it is working now.
10:33 AM Ticket #3988 (Crash on Big Sur with unhelpful stack) closed by Tom Goddard
can't reproduce
9:28 AM Ticket #3987 (Crash in Apple graphics driver) closed by pett
can't reproduce
9:22 AM Ticket #3981 (coulombic missing) closed by pett
duplicate
9:20 AM Ticket #3980 (coulombic missing) closed by pett
not a bug: Hi, The "coulombic" command is only in 1.1 and newer. You will need …
9:08 AM ChangeLog edited by pett
(diff)
6:51 AM Ticket #3990 (EnumOf using values instead of labels in error message) created by daniel.palma.i@…
[…]
5:48 AM Ticket #3989 ("volume boxes" attempts to a model to scene twice) created by caillancm@…
[…]
4:46 AM Ticket #3988 (Crash on Big Sur with unhelpful stack) created by chimerax-bug-report@…
[…]

Nov 26, 2020:

9:58 AM Ticket #3987 (Crash in Apple graphics driver) created by chimerax-bug-report@…
[…]

Nov 25, 2020:

10:33 PM Ticket #3986 (Volume Viewer step/style menus only accept press in middle macOS, Qt 5.15) created by goddard@…
[…]
8:59 PM Ticket #3985 (Modeller: UnboundLocalError: local variable 'target_name') created by goddard@…
[…]
7:40 PM Ticket #3984 (ViewDockX: Uncaught TypeError) created by goddard@…
[…]
7:30 PM Ticket #3983 (Update Tool: No matching distribution found for ChimeraX-RMF==0.9) created by goddard@…
[…]
7:16 PM Ticket #3982 (Numpy VisibleDeprecationWarning in Toolbar settings) created by goddard@…
[…]
7:01 PM Ticket #3981 (coulombic missing) created by wuxiaoxian@…
[…] coulombic problems.jpeg
7:00 PM Ticket #3980 (coulombic missing) created by chimerax-bug-report@…
[…] coulombic problems.jpeg
5:48 PM Ticket #3979 (Testing bug reporting with pyside2) closed by Tom Goddard
not a bug: Works fine.
5:47 PM Ticket #3979 (Testing bug reporting with pyside2) created by goddard@…
[…] bundle_info.xml
4:02 PM Ticket #3976 (pixel format not supported by webcam command) closed by Tom Goddard
fixed: Fixed in tomorrow's ChimeraX daily builds. Thanks for reporting the …
2:09 PM Ticket #3978 (glGetFramebufferAttachmentParameteriv: invalid operation) closed by Tom Goddard
nonchimerax: The ChimeraX error is due to buggy graphics driver. Your graphics …
1:33 PM Ticket #3978 (glGetFramebufferAttachmentParameteriv: invalid operation) created by tahjib@…
[…]
11:18 AM Ticket #3977 (glDrawBuffer: invalid operation) closed by Tom Goddard
can't reproduce: The OpenGL man page for glDrawBuffer suggests …
7:29 AM Ticket #3977 (glDrawBuffer: invalid operation) created by chimerax-bug-report@…
[…]
1:56 AM Ticket #3976 (pixel format not supported by webcam command) created by cgalicia@…
[…]

Nov 24, 2020:

5:54 PM Ticket #3975 (Show sequence AttributeError: 'set' object has no attribute '_c_pointer') closed by Tom Goddard
fixed: Fixed on develop branch by Eric a week ago. I could merge it into the …
4:22 PM Ticket #3975 (Show sequence AttributeError: 'set' object has no attribute '_c_pointer') created by goddard@…
[…]

Nov 23, 2020:

10:46 AM Ticket #3973 (Map fitting: fmap is None) closed by Tom Goddard
duplicate: Duplicate of #3559. Fixed 4 months ago, fixed in ChimeraX 1.1.
7:58 AM Ticket #3974 (Something broke in the PBD look up) created by Hans-Christian.Reinecker@…
[…] [attachment:"SLFN5 …
6:26 AM Ticket #3973 (Map fitting: fmap is None) created by chimerax-bug-report@…
[…]
4:41 AM Ticket #3972 (ChimeraX OpenGL startup issue after updating system to Ubuntu 20.04) created by luca.jovine@…
[…]

Nov 21, 2020:

10:57 AM Ticket #3971 ('OpenMM_Thread_Handler' object has no attribute '_c_pointer') created by kartik.manne@…
[…]

Nov 20, 2020:

7:03 PM Ticket #3970 (Can ChimeraX use GPL licensed QtCharts) created by tony.schaefer@…
QtCharts is a module for making plots that is an alternative to …
3:13 PM Ticket #3687 (Find a way for VR meeting to handle firewalls) closed by Tom Goddard
fixed: Added GUI panel. Allows choosing different proxy servers. Tested …
10:58 AM Ticket #3969 ("toolshed install" doesn't work with custom bundle) created by daniel.palma.i@…
[…]
10:42 AM Ticket #3968 (map save error) closed by pett
fixed: Hi Rene, This will work in tomorrow's daily build. Until then, you …
9:31 AM Ticket #3968 (map save error) reopened by pett
Tom, All save keywords except for "models" are currently being …
9:15 AM Ticket #3968 (map save error) closed by pett
not a bug: Hi Rene, The keyword is 'maskZone', not 'zoneMask'. --Eric Eric …
9:07 AM Ticket #3968 (map save error) created by r.frank@…
[…]
8:16 AM Ticket #3967 (Toolshed json parsing error and volume session-restore error) created by chimerax-bug-report@…
[…]
5:25 AM Ticket #3966 (Clipper: Failure to read BUSTER MTZ file) created by erwin.pannecoucke@…
[…]
12:33 AM Ticket #3961 (Splash screen font size off for "restart action") closed by Greg Couch
fixed: It's currently sess.ui.splash_info("Restart action:\n%s" % line)

Nov 19, 2020:

6:46 PM Ticket #3965 (Dual display mac crash clicking menus) closed by Tom Goddard
duplicate: Similar to #3962
6:45 PM Ticket #3964 (Dual display mac crash clicking menus) closed by Tom Goddard
duplicate: Similar to #3962
6:43 PM Ticket #3963 (mac dual display crash clicking menus) closed by Tom Goddard
duplicate
6:41 PM Ticket #3965 (Dual display mac crash clicking menus) created by goddard@…
[…]
6:31 PM Ticket #3964 (Dual display mac crash clicking menus) created by goddard@…
[…]
6:21 PM Ticket #3963 (mac dual display crash clicking menus) created by goddard@…
[…]
5:57 PM Ticket #3959 (splash_info() called with incorrect args in nogui mode) closed by Greg Couch
fixed: The bug is that the nogui splash_info not treating those arguments as …
4:37 PM Ticket #3483 (Crash in garbage collection during session restore) closed by Greg Couch
can't reproduce: Need more information.
4:26 PM NeteSOW edited by Tom Goddard
(diff)
4:23 PM Ticket #3962 (Dual display crash showing tool tip) closed by Tom Goddard
can't reproduce: Other similar QToolTip crashes don't have sub event loop processing …
4:08 PM NeteSOW edited by Tom Goddard
ui-1 contains 46 zero bytes. Usually this is a short text file of … (diff)
4:02 PM DeveloperMeetings edited by Tom Goddard
(diff)
4:01 PM DeveloperMeetings2019 created by Tom Goddard
4:01 PM DeveloperMeetings edited by Tom Goddard
(diff)
3:59 PM 2020-11-19 edited by Tom Goddard
(diff)
2:10 PM NeteSOW edited by Elaine Meng
(diff)
2:10 PM NeteSOW edited by Elaine Meng
(diff)
1:44 PM NeteSOW edited by Elaine Meng
(diff)
1:44 PM Ticket #3962 (Dual display crash showing tool tip) created by chimerax-bug-report@…
[…]
12:54 PM 2020-11-19 edited by Elaine Meng
(diff)
12:40 PM 2020-11-19 edited by Scooter Morris
(diff)
12:37 PM 2020-11-19 edited by Elaine Meng
(diff)
12:34 PM 2020-11-19 edited by Scooter Morris
(diff)
12:34 PM 2020-11-19 edited by Scooter Morris
(diff)
12:33 PM 2020-11-19 edited by Elaine Meng
(diff)
12:32 PM 2020-11-19 edited by Elaine Meng
(diff)
12:31 PM 2020-11-19 edited by Elaine Meng
(diff)
12:25 PM 2020-11-19 edited by Elaine Meng
(diff)
12:21 PM 2020-11-19 edited by Elaine Meng
(diff)
12:05 PM 2020-11-19 edited by Tom Goddard
(diff)
11:06 AM 2020-11-19 created by Tom Goddard
11:01 AM DeveloperMeetings edited by Tom Goddard
(diff)
10:06 AM Ticket #3961 (Splash screen font size off for "restart action") created by Tristan Croll
[…] splash_screen.png
10:06 AM Ticket #3957 (FloatOption: name 'singleStep' is not defined) closed by pett
fixed
9:12 AM Ticket #3960 (Crash in garbage collection during new-object allocation) created by cassiezhang9@…
[…]
4:20 AM Ticket #3959 (splash_info() called with incorrect args in nogui mode) created by Tristan Croll
[…]

Nov 18, 2020:

8:03 PM Ticket #3958 (Better meeting network performance, msgpack) created by Tom Goddard
Would be good to replace the current ChimeraX meeting command network …
8:03 PM Ticket #3957 (FloatOption: name 'singleStep' is not defined) created by daniel.palma.i@…
[…]
7:49 PM Ticket #3875 (Setup a meeting name server) closed by Tom Goddard
fixed: Done. Used a simple custom Python name server to have desired …
7:43 PM Ticket #3878 (Remember VR meeting proxy settings) closed by Tom Goddard
fixed: Done. The meeting access command and meeting settings command control …
7:41 PM Ticket #3879 (Add a meeting settings panel) closed by Tom Goddard
fixed: Done. Menu Tools / General / Meeting.
5:54 PM NeteSOW edited by Tom Goddard
(diff)
5:46 PM NeteSOW edited by Tom Goddard
(diff)
1:40 PM Ticket #3956 (Crash in garbage collection during new-object allocation) created by cassiezhang9@…
[…]
11:46 AM Ticket #3951 (Mistaken use of caret operator) closed by pett
fixed
11:37 AM Ticket #3950 (After closing some models from restored session, session save fails) closed by Tom Goddard
duplicate: I think I figured out the bug. The problem is that that the session …
10:59 AM Ticket #3953 (Crash in Apple graphics driver) closed by Tom Goddard
nonchimerax: Mac Intel graphics driver crash when drawing scene. Graphics hardware …
10:00 AM Ticket #3955 (Crash in set_sseq_chain_id) closed by pett
duplicate: Duplicate of #3954
9:58 AM Ticket #3954 (Crash in set_sseq_chain_id) closed by pett
can't reproduce: The stack above set_sseq_chain_id makes no sense.
9:53 AM Ticket #3952 (Error in error message reinstalling bundle) closed by pett
duplicate: Hi Andras, Thanks for reporting this problem. We have had one other …
9:44 AM Ticket #3955 (Crash in set_sseq_chain_id) created by chimerax-bug-report@…
[…]
9:36 AM Ticket #3954 (Crash in set_sseq_chain_id) created by chimerax-bug-report@…
[…]
9:33 AM Ticket #3953 (Crash in Apple graphics driver) created by chimerax-bug-report@…
[…]
6:23 AM Ticket #3952 (Error in error message reinstalling bundle) created by szilagyi.andras@…
[…]

Nov 17, 2020:

3:06 PM Ticket #3951 (Mistaken use of caret operator) created by daniel.palma.i@…
[…]
2:53 PM Ticket #3950 (After closing some models from restored session, session save fails) created by claudia.mueller@…
[…]
9:01 AM Ticket #3949 (Crash while garbage collecting during object allocation) closed by pett
can't reproduce
8:53 AM Ticket #3948 (Problems coloring by residue number) closed by pett
fixed: As per Elaine's mail on chimerax-users, this was fixed a few days ago.
8:52 AM Ticket #3947 ('Alignment' object has no attribute '_headers') closed by pett
duplicate: Hi, Thanks for reporting this problem. It was fixed a few days after …
4:01 AM Ticket #3949 (Crash while garbage collecting during object allocation) created by chimerax-bug-report@…
[…]
12:55 AM Ticket #3948 (Problems coloring by residue number) created by Tristan Croll
[…]

Nov 16, 2020:

11:17 PM Ticket #3947 ('Alignment' object has no attribute '_headers') created by zhaozhennan15@…
[…]
5:15 PM Ticket #3927 (Saving files not producing file-history entries) closed by pett
fixed: Changed the name of a method and missed one use of it.
2:59 PM Ticket #3946 (Make OpenFileNameArg check that file exists) created by Tom Goddard
Would be convenient if OpenFileNameArg checked that the file exists so …
2:49 PM Ticket #1560 (Need command style guide) closed by pett
fixed: Placed the style guide into the docs and linked to it in various …
10:16 AM Ticket #3943 (Loading scipy: Cannot find the specified module) closed by Tom Goddard
duplicate: Duplicate of #3227 which was fixed in ChimeraX 1.1 by Greg Couch.
10:08 AM Ticket #3942 (Crash showing context menu on Mac, dual display) closed by Tom Goddard
can't reproduce: Appears to be Qt bug, possibly related to using 2 displays. Crash …
9:48 AM Ticket #3945 (Error saving settings) closed by pett
duplicate: Hi Mika, Thanks for reporting this problem. The code generating the …
9:39 AM Ticket #3944 (add_modified() not handling sets) closed by pett
duplicate: Hi Valentyn, Thanks for reporting this problem. Due to an oversight, …
9:31 AM Ticket #3941 (add_modified() not handling sets) closed by pett
fixed
3:38 AM Ticket #3945 (Error saving settings) created by s1960571@…
[…]

Nov 15, 2020:

6:59 PM Ticket #3944 (add_modified() not handling sets) created by sitins07@…
[…]
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