Opened 5 years ago

Closed 5 years ago

#4054 closed defect (fixed)

Cannot make a tool undockable

Reported by: Tony Schaefer Owned by: Tom Goddard
Priority: normal Milestone:
Component: UI Version:
Keywords: Cc: Eric Pettersen
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Windows-10-10.0.19041
ChimeraX Version: 1.2.dev202012121910 (2020-12-12 19:10:19 UTC)
Description
cannot make a tool undockable (i.e. right click -> unchecking "Dockable Tool" causes error)

Log:
> cd C:\Users\normn/Desktop

Current working directory is: C:\Users\normn\Desktop  
UCSF ChimeraX version: 1.2.dev202012121910 (2020-12-12)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

Error installing 'SEQCROW==0.24a0'  

Found existing installation: SEQCROW 0.24a0  
Uninstalling SEQCROW-0.24a0:  
Successfully uninstalled SEQCROW-0.24a0  
ERROR:  
Traceback (most recent call last):  
\xa0\xa0File "C:\Program Files\ChimeraX 1.2.dev202012121910\bin\lib\runpy.py",
line  
194, in _run_module_as_main  
\xa0\xa0\xa0\xa0return _run_code(code, main_globals, None,  
\xa0\xa0File "C:\Program Files\ChimeraX 1.2.dev202012121910\bin\lib\runpy.py",
line  
87, in _run_code  
\xa0\xa0\xa0\xa0exec(code, run_globals)  
\xa0\xa0File "C:\Program Files\ChimeraX 1.2.dev202012121910\bin\lib\site-  
packages\ChimeraX_main.py", line 947, in <module>  
\xa0\xa0\xa0\xa0exit_code = init(sys.argv)  
\xa0\xa0File "C:\Program Files\ChimeraX 1.2.dev202012121910\bin\lib\site-  
packages\ChimeraX_main.py", line 737, in init  
\xa0\xa0\xa0\xa0sess.toolshed.set_install_timestamp(per_user)  
\xa0\xa0File "C:\Program Files\ChimeraX 1.2.dev202012121910\bin\lib\site-  
packages\chimerax\core\toolshed\\\\__init__.py", line 576, in  
set_install_timestamp  
\xa0\xa0\xa0\xa0self._installed_bundle_info.set_install_timestamp(per_user=per_user)  
\xa0\xa0File "C:\Program Files\ChimeraX 1.2.dev202012121910\bin\lib\site-  
packages\chimerax\core\toolshed\installed.py", line 105, in  
set_install_timestamp  
\xa0\xa0\xa0\xa0with open(timestamp_file, 'w') as f:  
PermissionError: [Errno 13] Permission denied: 'C:\\\\\Program
Files\\\\\ChimeraX  
1.2.dev202012121910\\\\\bin\\\\\share\\\\\install-timestamp'  
  
  
  

> toolshed install ../Documents/GitHub/ChimAARON/dist/SEQCROW-0.24a0-py3-none-
> any.whl

Successfully installed SEQCROW-0.24a0  
Installed SEQCROW (0.24a0)  
resumed SEQCROW queue  
resumed SEQCROW queue  

> ui tool show "Build QM Input"

> ui tool show "File Info"

> open C:\Users\normn\Desktop\cf1-freq.log format log

Summary of feedback from opening C:\Users\normn\Desktop\cf1-freq.log  
---  
note | C:\Users\normn\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\AaronTools\atoms.py:208: UserWarning: Connectivity not found for
element: Zn  
warn("Connectivity not found for element: " + self.element)  
  
Opened cf1-freq.log as a Gaussian output file  

QMainWindowLayout::tabPosition called with out-of-bounds value '0'  

> ui tool show "Build QM Input"

> ui tool show "Process QM Thermochemistry"

C:\Users\normn\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\AaronTools\atoms.py:293: UserWarning: No copy method for <class
'chimerax.atomic.molobject.Atom'>: in-place changes may occur  
warn(  

> ui tool show "Add to Personal Library"

> ui tool show "Visualize Normal Modes"

> ui tool show "File Info"

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.2.dev202012121910\bin\lib\site-
packages\chimerax\ui\gui.py", line 2383, in <lambda>  
run(ses, "ui dockable %s %s" % (("true" if arg else "false"),  
NameError: name 'arg' is not defined  
  
NameError: name 'arg' is not defined  
  
File "C:\Program Files\ChimeraX 1.2.dev202012121910\bin\lib\site-
packages\chimerax\ui\gui.py", line 2383, in  
run(ses, "ui dockable %s %s" % (("true" if arg else "false"),  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 451.67
OpenGL renderer: GeForce 940M/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Hewlett-Packard
Model: HP Pavilion Notebook 
OS: Microsoft Windows 10 Home (Build 19041)
Memory: 8,508,424,192
MaxProcessMemory: 137,438,953,344
CPU: 4 Intel(R) Core(TM) i7-5500U CPU @ 2.40GHz
OSLanguage: en-US
Locale: ('en_US', 'cp1252')
PySide2 version: 5.15.1
Qt version: 5.15.1
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.0
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2020.12.5
    cftime: 1.3.0
    chardet: 3.0.4
    ChimeraX-AddH: 2.1.3
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.1
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.9.6
    ChimeraX-AtomicLibrary: 1.1
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.2
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.1
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.1
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-CommandLine: 1.1.3
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.2.dev202012121910
    ChimeraX-CoreFormats: 1.0
    ChimeraX-coulombic: 1.0.1
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-DataFormats: 1.0.1
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.0
    ChimeraX-Hbonds: 2.1
    ChimeraX-Help: 1.0
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.0
    ChimeraX-ImageFormats: 1.1
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0
    ChimeraX-Label: 1.0
    ChimeraX-ListInfo: 1.1
    ChimeraX-Log: 1.1.1
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Map: 1.0.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.0
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 1.1
    ChimeraX-MDcrds: 2.1
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.0
    ChimeraX-mmCIF: 2.2
    ChimeraX-MMTF: 2.0
    ChimeraX-Modeller: 1.0
    ChimeraX-ModelPanel: 1.0
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.0
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0
    ChimeraX-OpenCommand: 1.3.1
    ChimeraX-PDB: 2.2
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.0.1
    ChimeraX-Read-Pbonds: 1.0
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.2.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SeqView: 2.2.1
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.0
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.0.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.2.2
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.0
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.0
    ChimeraX-ToolshedUtils: 1.1
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.3.1
    ChimeraX-uniprot: 2.0
    ChimeraX-ViewDockX: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.3
    comtypes: 1.1.7
    cxservices: 1.0
    cycler: 0.10.0
    Cython: 0.29.21
    decorator: 4.4.2
    distlib: 0.3.1
    docutils: 0.16
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 2.10.0
    html2text: 2020.1.16
    idna: 2.10
    ihm: 0.17
    imagecodecs: 2020.5.30
    imagecodecs-lite: 2020.1.31
    imagesize: 1.2.0
    ipykernel: 5.3.4
    ipython: 7.18.1
    ipython-genutils: 0.2.0
    jedi: 0.17.2
    Jinja2: 2.11.2
    jupyter-client: 6.1.7
    jupyter-core: 4.7.0
    kiwisolver: 1.3.1
    line-profiler: 2.1.2
    lxml: 4.5.2
    lz4: 3.1.0
    MarkupSafe: 1.1.1
    matplotlib: 3.3.2
    msgpack: 1.0.0
    netCDF4: 1.5.4
    networkx: 2.5
    numexpr: 2.7.1
    numpy: 1.19.2
    numpydoc: 1.1.0
    openvr: 1.14.1501
    packaging: 20.8
    parso: 0.7.1
    pickleshare: 0.7.5
    Pillow: 7.2.0
    pip: 20.3.1
    pkginfo: 1.5.0.1
    prompt-toolkit: 3.0.8
    psutil: 5.7.2
    pycollada: 0.7.1
    pydicom: 2.0.0
    Pygments: 2.7.1
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 2.4.7
    PySide2: 5.15.1
    python-dateutil: 2.8.1
    pytz: 2020.4
    pywin32: 228
    pyzmq: 20.0.0
    qtconsole: 4.7.7
    QtPy: 1.9.0
    RandomWords: 0.3.0
    requests: 2.24.0
    scipy: 1.5.2
    Send2Trash: 1.5.0
    SEQCROW: 0.24a0
    setuptools: 50.3.2
    sfftk-rw: 0.6.7.dev1
    shiboken2: 5.15.1
    six: 1.15.0
    snowballstemmer: 2.0.0
    sortedcontainers: 2.2.2
    Sphinx: 3.2.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 1.0.3
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.4
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2020.9.3
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.0.5
    urllib3: 1.25.11
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.36.0
    wheel-filename: 1.2.0
    WMI: 1.5.1

Change History (3)

comment:1 by Eric Pettersen, 5 years ago

Cc: Eric Pettersen added
Component: Unassigned → UI
Owner: set to Tom Goddard
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → Cannot make a tool undockable

Looks like a PySide2 conversion "miss"

in reply to:  2 ; comment:2 by Tony Schaefer, 5 years ago 

It looks like "Start at ChimeraX Startup" has a similar issue:

Traceback (most recent call last):
  File "C:\Program Files\ChimeraX 1.2.dev202012121910\bin\lib\site-packages\chimerax\ui\gui.py", line 2359, in <lambda>
    run(ses, "ui autostart %s %s" % (("true" if arg else "false"),
NameError: name 'arg' is not defined

NameError: name 'arg' is not defined

File "C:\Program Files\ChimeraX 1.2.dev202012121910\bin\lib\site-packages\chimerax\ui\gui.py", line 2359, in
run(ses, "ui autostart %s %s" % (("true" if arg else "false"),


"In Favorites Menu" is fine though
________________________________
From: ChimeraX <ChimeraX-bugs-admin@cgl.ucsf.edu>
Sent: Monday, December 14, 2020 3:46 PM
To: Anthony James Schaefer <tony.schaefer@uga.edu>
Subject: [ChimeraX] #4054: ChimeraX bug report submission

[EXTERNAL SENDER - PROCEED CAUTIOUSLY]


#4054: ChimeraX bug report submission
---------------------------+-----------------------------
 Reporter:  Tony Schaefer  |                Type:  defect
   Status:  new            |            Priority:  normal
Component:  Unassigned     |          Blocked By:
 Blocking:                 |  Notify when closed:
---------------------------+-----------------------------
 {{{
 The following bug report has been submitted:
 Platform:        Windows-10-10.0.19041
 ChimeraX Version: 1.2.dev202012121910 (2020-12-12 19:10:19 UTC)
 Description
 cannot make a tool undockable (i.e. right click -> unchecking "Dockable
 Tool" causes error)

 Log:
 > cd C:\Users\normn/Desktop

 Current working directory is: C:\Users\normn\Desktop
 UCSF ChimeraX version: 1.2.dev202012121910 (2020-12-12)
 © 2016-2020 Regents of the University of California. All rights reserved.
 How to cite UCSF ChimeraX

 Error installing 'SEQCROW==0.24a0'

 Found existing installation: SEQCROW 0.24a0
 Uninstalling SEQCROW-0.24a0:
 Successfully uninstalled SEQCROW-0.24a0
 ERROR:
 Traceback (most recent call last):
 \xa0\xa0File "C:\Program Files\ChimeraX
 1.2.dev202012121910\bin\lib\runpy.py",
 line
 194, in _run_module_as_main
 \xa0\xa0\xa0\xa0return _run_code(code, main_globals, None,
 \xa0\xa0File "C:\Program Files\ChimeraX
 1.2.dev202012121910\bin\lib\runpy.py",
 line
 87, in _run_code
 \xa0\xa0\xa0\xa0exec(code, run_globals)
 \xa0\xa0File "C:\Program Files\ChimeraX 1.2.dev202012121910\bin\lib\site-
 packages\ChimeraX_main.py", line 947, in <module>
 \xa0\xa0\xa0\xa0exit_code = init(sys.argv)
 \xa0\xa0File "C:\Program Files\ChimeraX 1.2.dev202012121910\bin\lib\site-
 packages\ChimeraX_main.py", line 737, in init
 \xa0\xa0\xa0\xa0sess.toolshed.set_install_timestamp(per_user)
 \xa0\xa0File "C:\Program Files\ChimeraX 1.2.dev202012121910\bin\lib\site-
 packages\chimerax\core\toolshed\\\\__init__.py", line 576, in
 set_install_timestamp
 \xa0\xa0\xa0\xa0self._installed_bundle_info.set_install_timestamp(per_user=per_user)
 \xa0\xa0File "C:\Program Files\ChimeraX 1.2.dev202012121910\bin\lib\site-
 packages\chimerax\core\toolshed\installed.py", line 105, in
 set_install_timestamp
 \xa0\xa0\xa0\xa0with open(timestamp_file, 'w') as f:
 PermissionError: [Errno 13] Permission denied: 'C:\\\\\Program
 Files\\\\\ChimeraX
 1.2.dev202012121910\\\\\bin\\\\\share\\\\\install-timestamp'




 > toolshed install
 ../Documents/GitHub/ChimAARON/dist/SEQCROW-0.24a0-py3-none-
 > any.whl

 Successfully installed SEQCROW-0.24a0
 Installed SEQCROW (0.24a0)
 resumed SEQCROW queue
 resumed SEQCROW queue

 > ui tool show "Build QM Input"

 > ui tool show "File Info"

 > open C:\Users\normn\Desktop\cf1-freq.log format log

 Summary of feedback from opening C:\Users\normn\Desktop\cf1-freq.log
 ---
 note | C:\Users\normn\AppData\Local\UCSF\ChimeraX\1.2\site-
 packages\AaronTools\atoms.py:208: UserWarning: Connectivity not found for
 element: Zn
 warn("Connectivity not found for element: " + self.element)

 Opened cf1-freq.log as a Gaussian output file

 QMainWindowLayout::tabPosition called with out-of-bounds value '0'

 > ui tool show "Build QM Input"

 > ui tool show "Process QM Thermochemistry"

 C:\Users\normn\AppData\Local\UCSF\ChimeraX\1.2\site-
 packages\AaronTools\atoms.py:293: UserWarning: No copy method for <class
 'chimerax.atomic.molobject.Atom'>: in-place changes may occur
 warn(

 > ui tool show "Add to Personal Library"

 > ui tool show "Visualize Normal Modes"

 > ui tool show "File Info"

 Traceback (most recent call last):
 File "C:\Program Files\ChimeraX 1.2.dev202012121910\bin\lib\site-
 packages\chimerax\ui\gui.py", line 2383, in <lambda>
 run(ses, "ui dockable %s %s" % (("true" if arg else "false"),
 NameError: name 'arg' is not defined

 NameError: name 'arg' is not defined

 File "C:\Program Files\ChimeraX 1.2.dev202012121910\bin\lib\site-
 packages\chimerax\ui\gui.py", line 2383, in
 run(ses, "ui dockable %s %s" % (("true" if arg else "false"),

 See log for complete Python traceback.





 OpenGL version: 3.3.0 NVIDIA 451.67
 OpenGL renderer: GeForce 940M/PCIe/SSE2
 OpenGL vendor: NVIDIA Corporation
 Manufacturer: Hewlett-Packard
 Model: HP Pavilion Notebook
 OS: Microsoft Windows 10 Home (Build 19041)
 Memory: 8,508,424,192
 MaxProcessMemory: 137,438,953,344
 CPU: 4 Intel(R) Core(TM) i7-5500U CPU @ 2.40GHz
 OSLanguage: en-US
 Locale: ('en_US', 'cp1252')
 PySide2 version: 5.15.1
 Qt version: 5.15.1
 Installed Packages:
     alabaster: 0.7.12
     appdirs: 1.4.4
     Babel: 2.9.0
     backcall: 0.2.0
     blockdiag: 2.0.1
     certifi: 2020.12.5
     cftime: 1.3.0
     chardet: 3.0.4
     ChimeraX-AddH: 2.1.3
     ChimeraX-AlignmentAlgorithms: 2.0
     ChimeraX-AlignmentHdrs: 3.2
     ChimeraX-AlignmentMatrices: 2.0
     ChimeraX-Alignments: 2.1
     ChimeraX-Arrays: 1.0
     ChimeraX-Atomic: 1.9.6
     ChimeraX-AtomicLibrary: 1.1
     ChimeraX-AtomSearch: 2.0
     ChimeraX-AtomSearchLibrary: 1.0
     ChimeraX-AxesPlanes: 2.0
     ChimeraX-BasicActions: 1.1
     ChimeraX-BILD: 1.0
     ChimeraX-BlastProtein: 1.1
     ChimeraX-BondRot: 2.0
     ChimeraX-BugReporter: 1.0
     ChimeraX-BuildStructure: 2.2
     ChimeraX-Bumps: 1.0
     ChimeraX-BundleBuilder: 1.1
     ChimeraX-ButtonPanel: 1.0
     ChimeraX-CageBuilder: 1.0
     ChimeraX-CellPack: 1.0
     ChimeraX-Centroids: 1.1
     ChimeraX-ChemGroup: 2.0
     ChimeraX-Clashes: 2.1
     ChimeraX-ColorActions: 1.0
     ChimeraX-ColorGlobe: 1.0
     ChimeraX-CommandLine: 1.1.3
     ChimeraX-ConnectStructure: 2.0
     ChimeraX-Contacts: 1.0
     ChimeraX-Core: 1.2.dev202012121910
     ChimeraX-CoreFormats: 1.0
     ChimeraX-coulombic: 1.0.1
     ChimeraX-Crosslinks: 1.0
     ChimeraX-Crystal: 1.0
     ChimeraX-DataFormats: 1.0.1
     ChimeraX-Dicom: 1.0
     ChimeraX-DistMonitor: 1.1
     ChimeraX-DistUI: 1.0
     ChimeraX-Dssp: 2.0
     ChimeraX-EMDB-SFF: 1.0
     ChimeraX-ExperimentalCommands: 1.0
     ChimeraX-FileHistory: 1.0
     ChimeraX-FunctionKey: 1.0
     ChimeraX-Geometry: 1.1
     ChimeraX-gltf: 1.0
     ChimeraX-Graphics: 1.0
     ChimeraX-Hbonds: 2.1
     ChimeraX-Help: 1.0
     ChimeraX-HKCage: 1.3
     ChimeraX-IHM: 1.0
     ChimeraX-ImageFormats: 1.1
     ChimeraX-IMOD: 1.0
     ChimeraX-IO: 1.0
     ChimeraX-Label: 1.0
     ChimeraX-ListInfo: 1.1
     ChimeraX-Log: 1.1.1
     ChimeraX-LookingGlass: 1.1
     ChimeraX-Map: 1.0.2
     ChimeraX-MapData: 2.0
     ChimeraX-MapEraser: 1.0
     ChimeraX-MapFilter: 2.0
     ChimeraX-MapFit: 2.0
     ChimeraX-MapSeries: 2.0
     ChimeraX-Markers: 1.0
     ChimeraX-Mask: 1.0
     ChimeraX-MatchMaker: 1.1
     ChimeraX-MDcrds: 2.1
     ChimeraX-MedicalToolbar: 1.0.1
     ChimeraX-Meeting: 1.0
     ChimeraX-MLP: 1.0
     ChimeraX-mmCIF: 2.2
     ChimeraX-MMTF: 2.0
     ChimeraX-Modeller: 1.0
     ChimeraX-ModelPanel: 1.0
     ChimeraX-ModelSeries: 1.0
     ChimeraX-Mol2: 2.0
     ChimeraX-Morph: 1.0
     ChimeraX-MouseModes: 1.0
     ChimeraX-Movie: 1.0
     ChimeraX-Neuron: 1.0
     ChimeraX-Nucleotides: 2.0
     ChimeraX-OpenCommand: 1.3.1
     ChimeraX-PDB: 2.2
     ChimeraX-PDBBio: 1.0
     ChimeraX-PDBLibrary: 1.0
     ChimeraX-PickBlobs: 1.0
     ChimeraX-Positions: 1.0
     ChimeraX-PresetMgr: 1.0.1
     ChimeraX-PubChem: 2.0.1
     ChimeraX-Read-Pbonds: 1.0
     ChimeraX-Registration: 1.1
     ChimeraX-RemoteControl: 1.0
     ChimeraX-ResidueFit: 1.0
     ChimeraX-RestServer: 1.1
     ChimeraX-RNALayout: 1.0
     ChimeraX-RotamerLibMgr: 2.0
     ChimeraX-RotamerLibsDunbrack: 2.0
     ChimeraX-RotamerLibsDynameomics: 2.0
     ChimeraX-RotamerLibsRichardson: 2.0
     ChimeraX-SaveCommand: 1.2.1
     ChimeraX-SchemeMgr: 1.0
     ChimeraX-SDF: 2.0
     ChimeraX-Segger: 1.0
     ChimeraX-Segment: 1.0
     ChimeraX-SeqView: 2.2.1
     ChimeraX-Shape: 1.0.1
     ChimeraX-Shell: 1.0
     ChimeraX-Shortcuts: 1.0
     ChimeraX-ShowAttr: 1.0
     ChimeraX-ShowSequences: 1.0
     ChimeraX-SideView: 1.0
     ChimeraX-Smiles: 2.0.1
     ChimeraX-SmoothLines: 1.0
     ChimeraX-SpaceNavigator: 1.0
     ChimeraX-StdCommands: 1.2.2
     ChimeraX-STL: 1.0
     ChimeraX-Storm: 1.0
     ChimeraX-Struts: 1.0
     ChimeraX-Surface: 1.0
     ChimeraX-SwapAA: 2.0
     ChimeraX-SwapRes: 2.0
     ChimeraX-TapeMeasure: 1.0
     ChimeraX-Test: 1.0
     ChimeraX-Toolbar: 1.0
     ChimeraX-ToolshedUtils: 1.1
     ChimeraX-Tug: 1.0
     ChimeraX-UI: 1.3.1
     ChimeraX-uniprot: 2.0
     ChimeraX-ViewDockX: 1.0
     ChimeraX-Vive: 1.1
     ChimeraX-VolumeMenu: 1.0
     ChimeraX-VTK: 1.0
     ChimeraX-WavefrontOBJ: 1.0
     ChimeraX-WebCam: 1.0
     ChimeraX-WebServices: 1.0
     ChimeraX-Zone: 1.0
     colorama: 0.4.3
     comtypes: 1.1.7
     cxservices: 1.0
     cycler: 0.10.0
     Cython: 0.29.21
     decorator: 4.4.2
     distlib: 0.3.1
     docutils: 0.16
     filelock: 3.0.12
     funcparserlib: 0.3.6
     grako: 3.16.5
     h5py: 2.10.0
     html2text: 2020.1.16
     idna: 2.10
     ihm: 0.17
     imagecodecs: 2020.5.30
     imagecodecs-lite: 2020.1.31
     imagesize: 1.2.0
     ipykernel: 5.3.4
     ipython: 7.18.1
     ipython-genutils: 0.2.0
     jedi: 0.17.2
     Jinja2: 2.11.2
     jupyter-client: 6.1.7
     jupyter-core: 4.7.0
     kiwisolver: 1.3.1
     line-profiler: 2.1.2
     lxml: 4.5.2
     lz4: 3.1.0
     MarkupSafe: 1.1.1
     matplotlib: 3.3.2
     msgpack: 1.0.0
     netCDF4: 1.5.4
     networkx: 2.5
     numexpr: 2.7.1
     numpy: 1.19.2
     numpydoc: 1.1.0
     openvr: 1.14.1501
     packaging: 20.8
     parso: 0.7.1
     pickleshare: 0.7.5
     Pillow: 7.2.0
     pip: 20.3.1
     pkginfo: 1.5.0.1
     prompt-toolkit: 3.0.8
     psutil: 5.7.2
     pycollada: 0.7.1
     pydicom: 2.0.0
     Pygments: 2.7.1
     PyOpenGL: 3.1.5
     PyOpenGL-accelerate: 3.1.5
     pyparsing: 2.4.7
     PySide2: 5.15.1
     python-dateutil: 2.8.1
     pytz: 2020.4
     pywin32: 228
     pyzmq: 20.0.0
     qtconsole: 4.7.7
     QtPy: 1.9.0
     RandomWords: 0.3.0
     requests: 2.24.0
     scipy: 1.5.2
     Send2Trash: 1.5.0
     SEQCROW: 0.24a0
     setuptools: 50.3.2
     sfftk-rw: 0.6.7.dev1
     shiboken2: 5.15.1
     six: 1.15.0
     snowballstemmer: 2.0.0
     sortedcontainers: 2.2.2
     Sphinx: 3.2.1
     sphinxcontrib-applehelp: 1.0.2
     sphinxcontrib-blockdiag: 2.0.0
     sphinxcontrib-devhelp: 1.0.2
     sphinxcontrib-htmlhelp: 1.0.3
     sphinxcontrib-jsmath: 1.0.1
     sphinxcontrib-qthelp: 1.0.3
     sphinxcontrib-serializinghtml: 1.1.4
     suds-jurko: 0.6
     tables: 3.6.1
     tifffile: 2020.9.3
     tinyarray: 1.2.3
     tornado: 6.1
     traitlets: 5.0.5
     urllib3: 1.25.11
     wcwidth: 0.2.5
     webcolors: 1.11.1
     wheel: 0.36.0
     wheel-filename: 1.2.0
     WMI: 1.5.1

 }}}

--
Ticket URL: <https://plato.cgl.ucsf.edu/trac/ChimeraX/ticket/4054>
ChimeraX <http://www.rbvi.ucsf.edu/chimerax/>
ChimeraX Issue Tracker

comment:3 by Tom Goddard, 5 years ago

Resolution: → fixed
Status: assigned → closed

Fixed.

Bug introduced when converting PyQt5 to PySide2. Dockable and auto-start tool context menu entries were broken.

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