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Opened 5 years ago
Closed 5 years ago
#3991 closed defect (fixed)
temp file collision
| Reported by: | Tristan Croll | Owned by: | Eric Pettersen |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Input/Output | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Linux-3.10.0-1127.19.1.el7.x86_64-x86_64-with-centos-7.8.2003-Core
ChimeraX Version: 1.1 (2020-09-09 22:22:27 UTC)
Description
This ChimeraX process is running a script, saving files resulting from different ISOLDE settings. I got the traceback in the log at the same time as I opened a file in a separate ChimeraX session - looks like they were both using the same temp file at the same time?
Log:
UCSF ChimeraX version: 1.1 (2020-09-09)
© 2016-2020 Regents of the University of California. All rights reserved.
> open starting.cxs
Deleting Crystallographic maps (3fyj.mtz)
Deleting (LIVE) 2mFo-DFc
Deleting (LIVE) mFo-DFc
Deleting (LIVE) 2mFo-DFc_sharp_49
Deleting (LIVE) MDFF potential
restore_snapshot for "RotamerRestraintMgr" returned None
Log from Fri Nov 27 19:15:06 2020UCSF ChimeraX version: 1.1 (2020-09-09)
© 2016-2020 Regents of the University of California. All rights reserved.
> open
> /run/media/tic20/storage/structure_dump/papers/2020_study_weekend/examples/3fyj_ref_3fhr/full_grid_search/starting.cxs
Deleting Crystallographic maps (3fyj.mtz)
Deleting (LIVE) 2mFo-DFc
Deleting (LIVE) mFo-DFc
Deleting (LIVE) 2mFo-DFc_sharp_49
Deleting (LIVE) MDFF potential
restore_snapshot for "RotamerRestraintMgr" returned None
Log from Fri Nov 27 12:16:38 2020UCSF ChimeraX version: 1.1 (2020-09-09)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /run/media/tic20/storage/structure_dump/papers/2020_study_weekend/examples/3fyj_ref_3fhr/3fyj.cif
> format mmcif
3fyj.cif title:
Crystal structure of an optimzied benzothiophene inhibitor bound to MAPKAP
Kinase-2 (MK-2) [more info...]
Chain information for 3fyj.cif #1
---
Chain | Description
X | MAP kinase-activated protein kinase 2
Non-standard residues in 3fyj.cif #1
---
B97 —
(10R)-10-methyl-3-(6-methylpyridin-3-yl)-9,10,11,12-tetrahydro-8H-[1,4]diazepino[5',6':4,5]thieno[3,2-f]quinolin-8-one
3fyj.cif mmCIF Assemblies
---
1| software_defined_assembly
2| author_defined_assembly
> isolde start
> set selectionWidth 4
3fyj.cif title:
Crystal structure of an optimzied benzothiophene inhibitor bound to MAPKAP
Kinase-2 (MK-2) [more info...]
Chain information for 3fyj.cif
---
Chain | Description
1.2/X | MAP kinase-activated protein kinase 2
Non-standard residues in 3fyj.cif #1.2
---
B97 —
(10R)-10-methyl-3-(6-methylpyridin-3-yl)-9,10,11,12-tetrahydro-8H-[1,4]diazepino[5',6':4,5]thieno[3,2-f]quinolin-8-one
3fyj.cif mmCIF Assemblies
---
1| software_defined_assembly
2| author_defined_assembly
Done loading forcefield
> addh
Summary of feedback from adding hydrogens to 3fyj.cif #1.2
---
notes | Termini for 3fyj.cif (#1.2) chain X determined from SEQRES records
Chain-initial residues that are actual N termini: /X GLN 45
Chain-initial residues that are not actual N termini: /X LYS 239, /X GLY 282
Chain-final residues that are actual C termini:
Chain-final residues that are not actual C termini: /X SER 216, /X SER 265, /X
ARG 364
189 hydrogen bonds
Adding 'H' to /X LYS 239
Adding 'H' to /X GLY 282
/X ARG 364 is not terminus, removing H atom from 'C'
2338 hydrogens added
WARNING: found column "/crystal_0/dataset/FOM F" suggesting one of the data
types (HKL_data_F_sigF_float, HKL_data_F_phi_float), but the following column
type "I" does not match any of the expected types (Q, P). Importing of this
column has been skipped.
> close #1.1.1.5
> open
> /run/media/tic20/storage/structure_dump/papers/2020_study_weekend/examples/3fyj_ref_3fhr/3fhr/Refine_1/3fhr_refine_1.pdb
Chain information for 3fhr_refine_1.pdb #2
---
Chain | Description
A | No description available
> matchmaker #2 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 3fyj.cif, chain X (#1.2) with 3fhr_refine_1.pdb, chain A (#2),
sequence alignment score = 966.4
RMSD between 243 pruned atom pairs is 1.027 angstroms; (across all 266 pairs:
1.297)
> save starting.cxs
opened ChimeraX session
> select #1
4663 atoms, 4713 bonds, 2 pseudobonds, 283 residues, 26 models selected
> select clear
> save dihedral_restraint_trial_0_0_0_repeat_0.pdb #1
> select clear
> save dihedral_restraint_trial_0_0_0_repeat_1.pdb #1
> save dihedral_restraint_trial_0_0_0_repeat_2.pdb #1
Updating bulk solvent parameters...
> view :B97
> select up
45 atoms, 49 bonds, 1 residue, 1 model selected
> delete sel&H
> select clear
> save starting.cxs
opened ChimeraX session
> select #2
2379 atoms, 2291 bonds, 6 pseudobonds, 414 residues, 2 models selected
> select clear
> isolde start
> isolde restrain torsions #1.2 templateResidues #2
The "isolde restrain torsions" command only applies to protein chains. Other
residues have been ignored.
> isolde set timeStepsPerGuiUpdate 5000
> isolde sim start #1.2
> select clear
> save dihedral_restraint_trial_angle_range_30_alpha_0_spring50_repeat_0.pdb
> #1.2
> save dihedral_restraint_trial_angle_range_30_alpha_0_spring50_repeat_1.pdb
> #1.2
Updating bulk solvent parameters...
> isolde start
> isolde restrain torsions #1.2 templateResidues #2
The "isolde restrain torsions" command only applies to protein chains. Other
residues have been ignored.
> isolde set timeStepsPerGuiUpdate 5000
> isolde sim start #1.2
> select clear
> hide #!1.1 models
> hide #!2 models
> save dihedral_restraint_trial_angle_range_30_alpha_0_spring_50_repeat_0.pdb
> #1.2
> save dihedral_restraint_trial_angle_range_30_alpha_0_spring_50_repeat_1.pdb
> #1.2
> save dihedral_restraint_trial_angle_range_30_alpha_0_spring_50_repeat_2.pdb
> #1.2
> save dihedral_restraint_trial_angle_range_30_alpha_0_spring_100_repeat_0.pdb
> #1.2
> save dihedral_restraint_trial_angle_range_30_alpha_0_spring_100_repeat_1.pdb
> #1.2
> save dihedral_restraint_trial_angle_range_30_alpha_0_spring_100_repeat_2.pdb
> #1.2
> save dihedral_restraint_trial_angle_range_30_alpha_0_spring_150_repeat_0.pdb
> #1.2
> save dihedral_restraint_trial_angle_range_30_alpha_0_spring_150_repeat_1.pdb
> #1.2
> save dihedral_restraint_trial_angle_range_30_alpha_0_spring_150_repeat_2.pdb
> #1.2
> save dihedral_restraint_trial_angle_range_30_alpha_0_spring_200_repeat_0.pdb
> #1.2
> save dihedral_restraint_trial_angle_range_30_alpha_0_spring_200_repeat_1.pdb
> #1.2
> save dihedral_restraint_trial_angle_range_30_alpha_0_spring_200_repeat_2.pdb
> #1.2
> save dihedral_restraint_trial_angle_range_30_alpha_0_spring_250_repeat_0.pdb
> #1.2
> save dihedral_restraint_trial_angle_range_30_alpha_0_spring_250_repeat_1.pdb
> #1.2
> save dihedral_restraint_trial_angle_range_30_alpha_0_spring_250_repeat_2.pdb
> #1.2
> save dihedral_restraint_trial_angle_range_30_alpha_0_spring_300_repeat_0.pdb
> #1.2
> save dihedral_restraint_trial_angle_range_30_alpha_0_spring_300_repeat_1.pdb
> #1.2
> save dihedral_restraint_trial_angle_range_30_alpha_0_spring_300_repeat_2.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.1_spring_50_repeat_0.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.1_spring_50_repeat_1.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.1_spring_50_repeat_2.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.1_spring_100_repeat_0.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.1_spring_100_repeat_1.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.1_spring_100_repeat_2.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.1_spring_150_repeat_0.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.1_spring_150_repeat_1.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.1_spring_150_repeat_2.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.1_spring_200_repeat_0.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.1_spring_200_repeat_1.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.1_spring_200_repeat_2.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.1_spring_250_repeat_0.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.1_spring_250_repeat_1.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.1_spring_250_repeat_2.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.1_spring_300_repeat_0.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.1_spring_300_repeat_1.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.1_spring_300_repeat_2.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.2_spring_50_repeat_0.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.2_spring_50_repeat_1.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.2_spring_50_repeat_2.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.2_spring_100_repeat_0.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.2_spring_100_repeat_1.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.2_spring_100_repeat_2.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.2_spring_150_repeat_0.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.2_spring_150_repeat_1.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.2_spring_150_repeat_2.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.2_spring_200_repeat_0.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.2_spring_200_repeat_1.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.2_spring_200_repeat_2.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.2_spring_250_repeat_0.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.2_spring_250_repeat_1.pdb
> #1.2
Traceback (most recent call last):
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
FileNotFoundError: [Errno 2] No such file or directory:
'/home/tic20/.local/share/ChimeraX/commands.tmp' ->
'/home/tic20/.local/share/ChimeraX/commands'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/cmd_line/tool.py", line 304, in _command_started_cb
typed=self._just_typed_command is not None)
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/cmd_line/tool.py", line 401, in add
self._history.enqueue((item, typed))
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/history.py", line 171, in enqueue
self.save()
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/history.py", line 201, in save
self._history.save(self._queue)
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/safesave.py", line 109, in __exit__
os.remove(self._tmp_filename)
FileNotFoundError: [Errno 2] No such file or directory:
'/home/tic20/.local/share/ChimeraX/commands.tmp'
Error processing trigger "command started":
FileNotFoundError: [Errno 2] No such file or directory:
'/home/tic20/.local/share/ChimeraX/commands.tmp'
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/safesave.py", line 109, in __exit__
os.remove(self._tmp_filename)
See log for complete Python traceback.
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.2_spring_250_repeat_2.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.2_spring_300_repeat_0.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.2_spring_300_repeat_1.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.2_spring_300_repeat_2.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.3_spring_50_repeat_0.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.3_spring_50_repeat_1.pdb
> #1.2
> save
> dihedral_restraint_trial_angle_range_30_alpha_0.3_spring_50_repeat_2.pdb
> #1.2
OpenGL version: 3.3.0 NVIDIA 455.32.00
OpenGL renderer: TITAN Xp/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Dell Inc.
Model: Precision T5600
OS: CentOS Linux 7 Core
Architecture: 64bit ELF
CPU: 32 Intel(R) Xeon(R) CPU E5-2687W 0 @ 3.10GHz
Cache Size: 20480 KB
Memory:
total used free shared buff/cache available
Mem: 62G 7.9G 43G 283M 11G 54G
Swap: 4.9G 0B 4.9G
Graphics:
03:00.0 VGA compatible controller [0300]: NVIDIA Corporation GP102 [TITAN Xp] [10de:1b02] (rev a1)
Subsystem: NVIDIA Corporation Device [10de:11df]
Kernel driver in use: nvidia
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.9
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.8.0
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.6.20
chardet: 3.0.4
ChimeraX-AddH: 2.1.1
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-Arrays: 1.0
ChimeraX-Async: 0.1
ChimeraX-Atomic: 1.6.1
ChimeraX-AtomSearch: 2.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.0.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.0
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.0
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.0
ChimeraX-Clipper: 0.15.0
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-CommandLine: 1.1.3
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.1
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.0.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-DataFormats: 1.0
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.0
ChimeraX-Help: 1.0
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.0
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0
ChimeraX-ISOLDE: 1.1.0
ChimeraX-Label: 1.0
ChimeraX-LinuxSupport: 1.0
ChimeraX-ListInfo: 1.0
ChimeraX-Log: 1.1.1
ChimeraX-LookingGlass: 1.1
ChimeraX-Map: 1.0.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.1
ChimeraX-MDcrds: 2.0
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.0
ChimeraX-mmCIF: 2.2
ChimeraX-MMTF: 2.0
ChimeraX-Modeller: 1.0
ChimeraX-ModelPanel: 1.0
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.0
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0
ChimeraX-OpenCommand: 1.2.1
ChimeraX-PDB: 2.1
ChimeraX-PDBBio: 1.0
ChimeraX-Phenix: 0.1
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0
ChimeraX-PubChem: 2.0
ChimeraX-Read-Pbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.0
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.2
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.0.4
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.0
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0
ChimeraX-ToolshedUtils: 1.0
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.2.3
ChimeraX-uniprot: 2.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.20
decorator: 4.4.2
distlib: 0.3.1
distro: 1.5.0
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
graphviz: 0.14.1
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.16
imagecodecs: 2020.5.30
imagecodecs-lite: 2020.1.31
imagesize: 1.2.0
ipykernel: 5.3.0
ipython: 7.15.0
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.3
jupyter-core: 4.6.3
kiwisolver: 1.2.0
line-profiler: 2.1.2
lxml: 4.5.1
MarkupSafe: 1.1.1
matplotlib: 3.2.1
msgpack: 1.0.0
netifaces: 0.10.9
networkx: 2.4
numexpr: 2.7.1
numpy: 1.18.5
numpydoc: 1.0.0
objgraph: 3.4.1
openvr: 1.12.501
packaging: 20.4
ParmEd: 3.2.0
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.1.2
pip: 20.2.2
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.7
psutil: 5.7.0
ptyprocess: 0.6.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.6.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.12.3
PyQt5-sip: 4.19.19
PyQtWebEngine-commercial: 5.12.1
python-dateutil: 2.8.1
pytz: 2020.1
pyzmq: 19.0.2
qtconsole: 4.7.4
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.4.1
Send2Trash: 1.5.0
SEQCROW: 0.20
setuptools: 49.4.0
sfftk-rw: 0.6.6.dev0
six: 1.15.0
snowballstemmer: 2.0.0
sortedcontainers: 2.2.2
Sphinx: 3.1.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 1.0.3
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.4
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.6.3
tinyarray: 1.2.2
tornado: 6.0.4
traitlets: 5.0.4
urllib3: 1.25.10
versioneer: 0.18
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.34.2
Change History (2)
comment:1 by , 5 years ago
| Component: | Unassigned → Input/Output |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → temp file collision |
comment:2 by , 5 years ago
| Resolution: | → fixed |
|---|---|
| Status: | accepted → closed |
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Hi Tristan,
--Eric