Opened 5 years ago

Closed 5 years ago

#3988 closed defect (can't reproduce)

Crash on Big Sur with unhelpful stack

Reported by: chimerax-bug-report@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Platform Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        Darwin-20.1.0-x86_64-i386-64bit
ChimeraX Version: 1.1.1 (2020-10-07 08:32:49 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process:               ChimeraX [44420]
Path:                  /private/var/folders/*/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX
Identifier:            edu.ucsf.cgl.ChimeraX
Version:               1.1.1 (1.1.1.0)
Code Type:             X86-64 (Native)
Parent Process:        ??? [1]
Responsible:           ChimeraX [44420]
User ID:               501

Date/Time:             2020-11-27 14:44:06.257 +0200
OS Version:            macOS 11.0.1 (20B29)
Report Version:        12
Bridge OS Version:     5.0.1 (18P2561)
Anonymous UUID:        AA434AD4-BDEB-C8E1-A41F-9C26E35C2DAB


Time Awake Since Boot: 72000 seconds

System Integrity Protection: enabled

Crashed Thread:        0  CrBrowserMain

Exception Type:        EXC_BAD_ACCESS (SIGBUS)
Exception Codes:       KERN_MEMORY_ERROR at 0x000000012ec3d080
Exception Note:        EXC_CORPSE_NOTIFY

VM Regions Near 0x12ec3d080:
    VM_ALLOCATE                 12ebfe000-12ec06000    [   32K] r--/r-- SM=ALI  
--> mapped file                 12ec06000-12ed6e000    [ 1440K] r-x/rwx SM=COW  Object_id=af35b293
    mapped file                 12ed6e000-12ed86000    [   96K] rw-/rwx SM=COW  Object_id=b0226d93

Thread 0 Crashed:: CrBrowserMain
0   ???                           	0x00007fff2030e462 0 + 140733733463138
1   ???                           	0x00007fff2021eba3 0 + 140733732481955
2   ???                           	0x00007fff20380d7d 0 + 140733733932413
3   ChimeraX                      	000000000000000000 0 + 0
4   ???                           	0x00007fff20433c2d 0 + 140733734665261
5   ???                           	0x00007fff20433426 0 + 140733734663206
6   ???                           	0x00007fff204326be 0 + 140733734659774
7   ???                           	0x00007fff2869efd0 0 + 140733871419344
8   ???                           	0x00007fff2869edcc 0 + 140733871418828
9   ???                           	0x00007fff2869eaef 0 + 140733871418095
10  ???                           	0x00007fff22c4bf85 0 + 140733776707461
11  ???                           	0x00007fff22c4a74b 0 + 140733776701259
12  ???                           	0x00007fff22c3cbda 0 + 140733776645082
13  ???                           	0x000000012ec3bde3 0 + 5079547363
14  ???                           	0x0000000124cba93f 0 + 4912294207
15  ???                           	0x0000000124cbf932 0 + 4912314674
16  ???                           	0x0000000123c827d2 0 + 4895287250
17  ???                           	0x000000010aee8382 0 + 4478370690
18  ???                           	0x000000010aee78b9 0 + 4478367929
19  ???                           	0x000000010afbcb60 0 + 4479241056
20  ???                           	0x000000010afb9817 0 + 4479227927
21  ???                           	0x000000010aee7d61 0 + 4478369121
22  ???                           	0x000000010afbcbd4 0 + 4479241172
23  ???                           	0x000000010afb9817 0 + 4479227927
24  ???                           	0x000000010afbda2c 0 + 4479244844
25  ???                           	0x000000010aee7879 0 + 4478367865
26  ???                           	0x000000010afbcbd4 0 + 4479241172
27  ???                           	0x000000010afb98ae 0 + 4479228078
28  ???                           	0x000000010afbda2c 0 + 4479244844
29  ???                           	0x000000010afb2fb0 0 + 4479201200
30  ???                           	0x000000010afb0547 0 + 4479190343
31  ???                           	0x000000010aee852d 0 + 4478371117
32  ???                           	0x000000010aee78b9 0 + 4478367929
33  ???                           	0x000000010afbcb60 0 + 4479241056
34  ???                           	0x000000010afb98ae 0 + 4479228078
35  ???                           	0x000000010afbda2c 0 + 4479244844
36  ???                           	0x000000010aee7879 0 + 4478367865
37  ???                           	0x000000010afbcbd4 0 + 4479241172
38  ???                           	0x000000010afb98ae 0 + 4479228078
39  ???                           	0x000000010afbda2c 0 + 4479244844
40  ???                           	0x000000010aee7377 0 + 4478366583
41  ???                           	0x000000010b017af3 0 + 4479613683
42  ???                           	0x000000010b016bdc 0 + 4479609820
43  ???                           	0x000000010b0154c3 0 + 4479603907
44  ???                           	0x000000010aebcdc8 0 + 4478193096
45  ???                           	0x00007fff20357631 0 + 140733733762609

Thread 1:
0   ???                           	0x00007fff2030a8e2 0 + 140733733447906
1   ???                           	0x000000010c844c3b 0 + 4504964155
2   ???                           	0x00007fff2033c950 0 + 140733733652816
3   ???                           	0x00007fff2033847b 0 + 140733733635195

Thread 2:
0   ???                           	0x00007fff2030a8e2 0 + 140733733447906
1   ???                           	0x000000010c844c3b 0 + 4504964155
2   ???                           	0x00007fff2033c950 0 + 140733733652816
3   ???                           	0x00007fff2033847b 0 + 140733733635195

Thread 3:
0   ???                           	0x00007fff2030a8e2 0 + 140733733447906
1   ???                           	0x000000010c844c3b 0 + 4504964155
2   ???                           	0x00007fff2033c950 0 + 140733733652816
3   ???                           	0x00007fff2033847b 0 + 140733733635195

Thread 4:
0   ???                           	0x00007fff2030a8e2 0 + 140733733447906
1   ???                           	0x000000010c844c3b 0 + 4504964155
2   ???                           	0x00007fff2033c950 0 + 140733733652816
3   ???                           	0x00007fff2033847b 0 + 140733733635195

Thread 5:
0   ???                           	0x00007fff2030a8e2 0 + 140733733447906
1   ???                           	0x000000010c844c3b 0 + 4504964155
2   ???                           	0x00007fff2033c950 0 + 140733733652816
3   ???                           	0x00007fff2033847b 0 + 140733733635195

Thread 6:
0   ???                           	0x00007fff2030a8e2 0 + 140733733447906
1   ???                           	0x000000010c844c3b 0 + 4504964155
2   ???                           	0x00007fff2033c950 0 + 140733733652816
3   ???                           	0x00007fff2033847b 0 + 140733733635195

Thread 7:
0   ???                           	0x00007fff2030a8e2 0 + 140733733447906
1   ???                           	0x000000010c844c3b 0 + 4504964155
2   ???                           	0x00007fff2033c950 0 + 140733733652816
3   ???                           	0x00007fff2033847b 0 + 140733733635195

Thread 8:
0   ???                           	0x00007fff2030a8e2 0 + 140733733447906
1   ???                           	0x000000010c844c3b 0 + 4504964155
2   ???                           	0x00007fff2033c950 0 + 140733733652816
3   ???                           	0x00007fff2033847b 0 + 140733733635195

Thread 9:
0   ???                           	0x00007fff2030a8e2 0 + 140733733447906
1   ???                           	0x000000010c844c3b 0 + 4504964155
2   ???                           	0x00007fff2033c950 0 + 140733733652816
3   ???                           	0x00007fff2033847b 0 + 140733733635195

Thread 10:
0   ???                           	0x00007fff20338458 0 + 140733733635160

Thread 11:
0   ???                           	0x00007fff20338458 0 + 140733733635160

Thread 12:: com.apple.NSEventThread
0   ???                           	0x00007fff20307e7e 0 + 140733733437054
1   ???                           	0x00007fff203081f0 0 + 140733733437936
2   ???                           	0x00007fff20434be7 0 + 140733734669287
3   ???                           	0x00007fff204332ba 0 + 140733734662842
4   ???                           	0x00007fff204326be 0 + 140733734659774
5   ???                           	0x00007fff22dd236d 0 + 140733778305901
6   ???                           	0x00007fff2033c950 0 + 140733733652816
7   ???                           	0x00007fff2033847b 0 + 140733733635195

Thread 13:: NetworkConfigWatcher
0   ???                           	0x00007fff20307e7e 0 + 140733733437054
1   ???                           	0x00007fff203081f0 0 + 140733733437936
2   ???                           	0x00000001297cc32d 0 + 4991009581
3   ???                           	0x00000001297cc22f 0 + 4991009327
4   ???                           	0x000000012978005d 0 + 4990697565
5   ???                           	0x00000001297a9085 0 + 4990865541
6   ???                           	0x00000001297fb9bc 0 + 4991203772
7   ???                           	0x000000012983b717 0 + 4991465239
8   ???                           	0x00007fff2033c950 0 + 140733733652816
9   ???                           	0x00007fff2033847b 0 + 140733733635195

Thread 14:: DnsConfigService
0   ???                           	0x00007fff2030c7e2 0 + 140733733455842
1   ???                           	0x0000000129a8acbd 0 + 4993887421
2   ???                           	0x0000000129841cdc 0 + 4991491292
3   ???                           	0x00000001297a9085 0 + 4990865541
4   ???                           	0x00000001297fb9bc 0 + 4991203772
5   ???                           	0x000000012983b717 0 + 4991465239
6   ???                           	0x00007fff2033c950 0 + 140733733652816
7   ???                           	0x00007fff2033847b 0 + 140733733635195

Thread 15:: TaskSchedulerServiceThread
0   ???                           	0x00007fff2030c7e2 0 + 140733733455842
1   ???                           	0x0000000129a8acbd 0 + 4993887421
2   ???                           	0x0000000129841cc4 0 + 4991491268
3   ???                           	0x00000001297a9085 0 + 4990865541
4   ???                           	0x00000001297eaa74 0 + 4991134324
5   ???                           	0x00000001297fb9bc 0 + 4991203772
6   ???                           	0x000000012983b717 0 + 4991465239
7   ???                           	0x00007fff2033c950 0 + 140733733652816
8   ???                           	0x00007fff2033847b 0 + 140733733635195

Thread 16:: TaskSchedulerForegroundWorker
0   ???                           	0x00007fff20307e7e 0 + 140733733437054
1   ???                           	0x00007fff203081f0 0 + 140733733437936
2   ???                           	0x00000001297cc32d 0 + 4991009581
3   ???                           	0x00000001297cc421 0 + 4991009825
4   ???                           	0x00000001297e3d28 0 + 4991106344
5   ???                           	0x00000001297e465b 0 + 4991108699
6   ???                           	0x00000001297e42c4 0 + 4991107780
7   ???                           	0x000000012983b717 0 + 4991465239
8   ???                           	0x00007fff2033c950 0 + 140733733652816
9   ???                           	0x00007fff2033847b 0 + 140733733635195

Thread 17:: TaskSchedulerForegroundBlockingWorker
0   ???                           	0x00007fff20307e7e 0 + 140733733437054
1   ???                           	0x00007fff203081f0 0 + 140733733437936
2   ???                           	0x00000001297cc32d 0 + 4991009581
3   ???                           	0x00000001297cc421 0 + 4991009825
4   ???                           	0x00000001297e3d28 0 + 4991106344
5   ???                           	0x00000001297e465b 0 + 4991108699
6   ???                           	0x00000001297e42c4 0 + 4991107780
7   ???                           	0x000000012983b717 0 + 4991465239
8   ???                           	0x00007fff2033c950 0 + 140733733652816
9   ???                           	0x00007fff2033847b 0 + 140733733635195

Thread 18:: TaskSchedulerForegroundBlockingWorker
0   ???                           	0x00007fff20307e7e 0 + 140733733437054
1   ???                           	0x00007fff203081f0 0 + 140733733437936
2   ???                           	0x00000001297cc32d 0 + 4991009581
3   ???                           	0x00000001297cc421 0 + 4991009825
4   ???                           	0x00000001297e3d28 0 + 4991106344
5   ???                           	0x00000001297e465b 0 + 4991108699
6   ???                           	0x00000001297e42c4 0 + 4991107780
7   ???                           	0x000000012983b717 0 + 4991465239
8   ???                           	0x00007fff2033c950 0 + 140733733652816
9   ???                           	0x00007fff2033847b 0 + 140733733635195

Thread 19:: TaskSchedulerForegroundBlockingWorker
0   ???                           	0x00007fff20307e7e 0 + 140733733437054
1   ???                           	0x00007fff203081f0 0 + 140733733437936
2   ???                           	0x00000001297cc32d 0 + 4991009581
3   ???                           	0x00000001297cc421 0 + 4991009825
4   ???                           	0x00000001297e3d28 0 + 4991106344
5   ???                           	0x00000001297e43bf 0 + 4991108031
6   ???                           	0x00000001297e42c4 0 + 4991107780
7   ???                           	0x000000012983b717 0 + 4991465239
8   ???                           	0x00007fff2033c950 0 + 140733733652816
9   ???                           	0x00007fff2033847b 0 + 140733733635195

Thread 20:: TaskSchedulerBackgroundWorker
0   ???                           	0x00007fff20307e7e 0 + 140733733437054
1   ???                           	0x00007fff203081f0 0 + 140733733437936
2   ???                           	0x00000001297cc32d 0 + 4991009581
3   ???                           	0x00000001297cc421 0 + 4991009825
4   ???                           	0x00000001297e3d28 0 + 4991106344
5   ???                           	0x00000001297e43bf 0 + 4991108031
6   ???                           	0x00000001297e4234 0 + 4991107636
7   ???                           	0x000000012983b717 0 + 4991465239
8   ???                           	0x00007fff2033c950 0 + 140733733652816
9   ???                           	0x00007fff2033847b 0 + 140733733635195

Thread 21:: TaskSchedulerBackgroundBlockingWorker
0   ???                           	0x00007fff20307e7e 0 + 140733733437054
1   ???                           	0x00007fff203081f0 0 + 140733733437936
2   ???                           	0x00000001297cc32d 0 + 4991009581
3   ???                           	0x00000001297cc421 0 + 4991009825
4   ???                           	0x00000001297e3d28 0 + 4991106344
5   ???                           	0x00000001297e43bf 0 + 4991108031
6   ???                           	0x00000001297e4234 0 + 4991107636
7   ???                           	0x000000012983b717 0 + 4991465239
8   ???                           	0x00007fff2033c950 0 + 140733733652816
9   ???                           	0x00007fff2033847b 0 + 140733733635195

Thread 22:: Chrome_IOThread
0   ???                           	0x00007fff2030c7e2 0 + 140733733455842
1   ???                           	0x0000000129a8acbd 0 + 4993887421
2   ???                           	0x0000000129841cc4 0 + 4991491268
3   ???                           	0x00000001297a9085 0 + 4990865541
4   ???                           	0x0000000129117fe4 0 + 4983980004
5   ???                           	0x00000001297fb9bc 0 + 4991203772
6   ???                           	0x000000012983b717 0 + 4991465239
7   ???                           	0x00007fff2033c950 0 + 140733733652816
8   ???                           	0x00007fff2033847b 0 + 140733733635195

Thread 23:: TaskSchedulerSingleThreadSharedBackgroundBlocking0
0   ???                           	0x00007fff20307e7e 0 + 140733733437054
1   ???                           	0x00007fff203081f0 0 + 140733733437936
2   ???                           	0x00000001297cc32d 0 + 4991009581
3   ???                           	0x00000001297cc22f 0 + 4991009327
4   ???                           	0x00000001297e3d1a 0 + 4991106330
5   ???                           	0x00000001297e43bf 0 + 4991108031
6   ???                           	0x00000001297e4264 0 + 4991107684
7   ???                           	0x000000012983b717 0 + 4991465239
8   ???                           	0x00007fff2033c950 0 + 140733733652816
9   ???                           	0x00007fff2033847b 0 + 140733733635195

Thread 24:: CompositorTileWorker1/58371
0   ???                           	0x00007fff2030a8e2 0 + 140733733447906
1   ???                           	0x0000000129839fa8 0 + 4991459240
2   ???                           	0x000000012a7c04c8 0 + 5007738056
3   ???                           	0x00000001297fa694 0 + 4991198868
4   ???                           	0x000000012983b717 0 + 4991465239
5   ???                           	0x00007fff2033c950 0 + 140733733652816
6   ???                           	0x00007fff2033847b 0 + 140733733635195

Thread 25:: AudioThread
0   ???                           	0x00007fff20307e7e 0 + 140733733437054
1   ???                           	0x00007fff203081f0 0 + 140733733437936
2   ???                           	0x00000001297cc32d 0 + 4991009581
3   ???                           	0x00000001297cc22f 0 + 4991009327
4   ???                           	0x000000012978005d 0 + 4990697565
5   ???                           	0x00000001297a9085 0 + 4990865541
6   ???                           	0x00000001297fb9bc 0 + 4991203772
7   ???                           	0x000000012983b717 0 + 4991465239
8   ???                           	0x00007fff2033c950 0 + 140733733652816
9   ???                           	0x00007fff2033847b 0 + 140733733635195

Thread 26:: Chrome_InProcGpuThread
0   ???                           	0x00007fff20307e7e 0 + 140733733437054
1   ???                           	0x00007fff203081f0 0 + 140733733437936
2   ???                           	0x00000001297cc32d 0 + 4991009581
3   ???                           	0x0000000129780052 0 + 4990697554
4   ???                           	0x00000001297a9085 0 + 4990865541
5   ???                           	0x00000001297fb9bc 0 + 4991203772
6   ???                           	0x000000012983b717 0 + 4991465239
7   ???                           	0x00007fff2033c950 0 + 140733733652816
8   ???                           	0x00007fff2033847b 0 + 140733733635195

Thread 27:: Chrome_ChildIOThread
0   ???                           	0x00007fff2030c7e2 0 + 140733733455842
1   ???                           	0x0000000129a8acbd 0 + 4993887421
2   ???                           	0x0000000129841cdc 0 + 4991491292
3   ???                           	0x00000001297a9085 0 + 4990865541
4   ???                           	0x00000001297fb9bc 0 + 4991203772
5   ???                           	0x000000012983b717 0 + 4991465239
6   ???                           	0x00007fff2033c950 0 + 140733733652816
7   ???                           	0x00007fff2033847b 0 + 140733733635195

Thread 28:: NetworkConfigWatcher
0   ???                           	0x00007fff20307e7e 0 + 140733733437054
1   ???                           	0x00007fff203081f0 0 + 140733733437936
2   ???                           	0x00000001297cc32d 0 + 4991009581
3   ???                           	0x00000001297cc22f 0 + 4991009327
4   ???                           	0x000000012978005d 0 + 4990697565
5   ???                           	0x00000001297a9085 0 + 4990865541
6   ???                           	0x00000001297fb9bc 0 + 4991203772
7   ???                           	0x000000012983b717 0 + 4991465239
8   ???                           	0x00007fff2033c950 0 + 140733733652816
9   ???                           	0x00007fff2033847b 0 + 140733733635195

Thread 29:: TaskSchedulerSingleThreadForegroundBlocking1
0   ???                           	0x00007fff20307e7e 0 + 140733733437054
1   ???                           	0x00007fff203081f0 0 + 140733733437936
2   ???                           	0x00000001297cc32d 0 + 4991009581
3   ???                           	0x00000001297cc22f 0 + 4991009327
4   ???                           	0x00000001297e3d1a 0 + 4991106330
5   ???                           	0x00000001297e465b 0 + 4991108699
6   ???                           	0x00000001297e4324 0 + 4991107876
7   ???                           	0x000000012983b717 0 + 4991465239
8   ???                           	0x00007fff2033c950 0 + 140733733652816
9   ???                           	0x00007fff2033847b 0 + 140733733635195

Thread 30:: NetworkConfigWatcher
0   ???                           	0x00007fff20307e7e 0 + 140733733437054
1   ???                           	0x00007fff203081f0 0 + 140733733437936
2   ???                           	0x00000001297cc32d 0 + 4991009581
3   ???                           	0x00000001297cc22f 0 + 4991009327
4   ???                           	0x000000012978005d 0 + 4990697565
5   ???                           	0x00000001297a9085 0 + 4990865541
6   ???                           	0x00000001297fb9bc 0 + 4991203772
7   ???                           	0x000000012983b717 0 + 4991465239
8   ???                           	0x00007fff2033c950 0 + 140733733652816
9   ???                           	0x00007fff2033847b 0 + 140733733635195

Thread 31:: TaskSchedulerForegroundWorker
0   ???                           	0x00007fff20307e7e 0 + 140733733437054
1   ???                           	0x00007fff203081f0 0 + 140733733437936
2   ???                           	0x00000001297cc32d 0 + 4991009581
3   ???                           	0x00000001297cc421 0 + 4991009825
4   ???                           	0x00000001297e3d28 0 + 4991106344
5   ???                           	0x00000001297e43bf 0 + 4991108031
6   ???                           	0x00000001297e42c4 0 + 4991107780
7   ???                           	0x000000012983b717 0 + 4991465239
8   ???                           	0x00007fff2033c950 0 + 140733733652816
9   ???                           	0x00007fff2033847b 0 + 140733733635195

Thread 0 crashed with X86 Thread State (64-bit):
  rax: 0x0000000000000000  rbx: 0x000000011398fe00  rcx: 0x00007f8a5008f418  rdx: 0x0000000000000000
  rdi: 0x0000000000000307  rsi: 0x000000000000000a  rbp: 0x00007f8a5008f440  rsp: 0x00007f8a5008f418
   r8: 0x00007f8a5008ff48   r9: 0xced08682f25402ce  r10: 0x000000011398fe00  r11: 0x0000000000000246
  r12: 0x0000000000000307  r13: 0x0000600001606120  r14: 0x000000000000000a  r15: 0x0000000000000016
  rip: 0x00007fff2030e462  rfl: 0x0000000000000246  cr2: 0x00007f8a5008e8c0
  
Logical CPU:     0
Error Code:      0x02000148
Trap Number:     133

Thread 0 instruction stream not available.

Thread 0 last branch register state not available.


Binary Images:
                 0 - 0xffffffffffffffff +ChimeraX (???) /private/var/folders/*/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX
       0x1138b8000 -        0x113953fff  dyld (832.7.1)  /usr/lib/dyld

External Modification Summary:
  Calls made by other processes targeting this process:
    task_for_pid: 0
    thread_create: 0
    thread_set_state: 0
  Calls made by this process:
    task_for_pid: 0
    thread_create: 0
    thread_set_state: 0
  Calls made by all processes on this machine:
    task_for_pid: 50583
    thread_create: 0
    thread_set_state: 0

VM Region Summary:
ReadOnly portion of Libraries: Total=848K resident=0K(0%) swapped_out_or_unallocated=848K(100%)
Writable regions: Total=2.7G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.7G(100%)
 
                                VIRTUAL   REGION 
REGION TYPE                        SIZE    COUNT (non-coalesced) 
===========                     =======  ======= 
Accelerate framework               128K        1 
Activity Tracing                   256K        1 
CG backing stores                 15.5M       12 
CG image                           156K       10 
CoreAnimation                       96K       15 
CoreGraphics                        16K        3 
CoreUI image data                 2332K       19 
Foundation                          16K        1 
Kernel Alloc Once                    8K        1 
MALLOC                           405.4M       77 
MALLOC guard page                   48K       10 
MALLOC_MEDIUM (reserved)           1.4G       12         reserved VM address space (unallocated)
MALLOC_NANO (reserved)           384.0M        1         reserved VM address space (unallocated)
OpenGL GLSL                        512K        6 
STACK GUARD                        124K       31 
Stack                            166.2M       32 
Stack Guard                       56.0M        1 
VM_ALLOCATE                       45.7M      253 
VM_ALLOCATE (reserved)           288.0M        2         reserved VM address space (unallocated)
__DATA                             224K        2 
__DATA_CONST                        32K        1 
__LINKEDIT                         240K        2 
__TEXT                             624K        1 
dylib                             1732K       25 
dylib (reserved)                    64K        5         reserved VM address space (unallocated)
mapped file                      358.3M      426 
shared memory                       48K        6 
===========                     =======  ======= 
TOTAL                              3.1G      956 
TOTAL, minus reserved VM space     1.0G      956 



Log:
UCSF ChimeraX version: 1.1.1 (2020-10-07)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 ATI-4.0.47
OpenGL renderer: AMD Radeon Pro Vega 64 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.Hardware:

    Hardware Overview:

      Model Name: iMac Pro
      Model Identifier: iMacPro1,1
      Processor Name: 10-Core Intel Xeon W
      Processor Speed: 3 GHz
      Number of Processors: 1
      Total Number of Cores: 10
      L2 Cache (per Core): 1 MB
      L3 Cache: 13.8 MB
      Hyper-Threading Technology: Enabled
      Memory: 64 GB
      System Firmware Version: 1554.50.3.0.0 (iBridge: 18.16.12561.0.0,0)

Software:

    System Software Overview:

      System Version: macOS 11.0.1 (20B29)
      Kernel Version: Darwin 20.1.0
      Time since boot: 20:06

Graphics/Displays:

    Radeon Pro Vega 64:

      Chipset Model: Radeon Pro Vega 64
      Type: GPU
      Bus: PCIe
      PCIe Lane Width: x16
      VRAM (Total): 16 GB
      Vendor: AMD (0x1002)
      Device ID: 0x6860
      Revision ID: 0x0000
      ROM Revision: 113-D0500D-114
      VBIOS Version: 113-D05001A1XT-018
      Option ROM Version: 113-D05001A1XT-018
      EFI Driver Version: 01.01.114
      Metal Family: Supported, Metal GPUFamily macOS 2
      Displays:
        iMac:
          Display Type: Built-In Retina LCD
          Resolution: 5120 x 2880 Retina
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal
        DELL U3219Q:
          Resolution: 7680 x 4320 (4320p/8K UHD 2 - 8K Ultra High Definition)
          UI Looks like: 3840 x 2160 @ 60Hz
          Framebuffer Depth: 24-Bit Color (ARGB8888)
          Display Serial Number: CDLPWP2     
          Mirror: Off
          Online: Yes
          Rotation: Supported
          Automatically Adjust Brightness: Yes
          Connection Type: Thunderbolt/DisplayPort

PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.9
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.0
    Babel: 2.8.0
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2020.6.20
    chardet: 3.0.4
    ChimeraX-AddH: 2.1.1
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.1
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.6.1
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 1.0.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.0
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.0
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.1
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.0
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-CommandLine: 1.1.3
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.1.1
    ChimeraX-CoreFormats: 1.0
    ChimeraX-coulombic: 1.0.1
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-DataFormats: 1.0
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.0
    ChimeraX-Hbonds: 2.0
    ChimeraX-Help: 1.0
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.0
    ChimeraX-ImageFormats: 1.0
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0
    ChimeraX-Label: 1.0
    ChimeraX-ListInfo: 1.0
    ChimeraX-Log: 1.1.1
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Map: 1.0.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.0
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 1.1
    ChimeraX-MDcrds: 2.0
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.0
    ChimeraX-mmCIF: 2.2
    ChimeraX-MMTF: 2.0
    ChimeraX-Modeller: 1.0
    ChimeraX-ModelPanel: 1.0
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.0
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0
    ChimeraX-OpenCommand: 1.2.1
    ChimeraX-PDB: 2.1
    ChimeraX-PDBBio: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0
    ChimeraX-PubChem: 2.0
    ChimeraX-Read-Pbonds: 1.0
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.0
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.2
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SeqView: 2.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.0
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.0
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.0.4
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.0
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.0
    ChimeraX-ToolshedUtils: 1.0
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.2.3
    ChimeraX-uniprot: 2.0
    ChimeraX-ViewDockX: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.3
    comtypes: 1.1.7
    cxservices: 1.0
    cycler: 0.10.0
    Cython: 0.29.20
    decorator: 4.4.2
    distlib: 0.3.1
    docutils: 0.16
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 2.10.0
    html2text: 2020.1.16
    idna: 2.10
    ihm: 0.16
    imagecodecs: 2020.5.30
    imagecodecs-lite: 2020.1.31
    imagesize: 1.2.0
    ipykernel: 5.3.0
    ipython: 7.15.0
    ipython-genutils: 0.2.0
    jedi: 0.17.2
    Jinja2: 2.11.2
    jupyter-client: 6.1.3
    jupyter-core: 4.6.3
    kiwisolver: 1.2.0
    line-profiler: 2.1.2
    lxml: 4.5.1
    MarkupSafe: 1.1.1
    matplotlib: 3.2.1
    msgpack: 1.0.0
    netifaces: 0.10.9
    networkx: 2.4
    numexpr: 2.7.1
    numpy: 1.18.5
    numpydoc: 1.0.0
    openvr: 1.12.501
    packaging: 20.4
    parso: 0.7.1
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 7.1.2
    pip: 20.2.2
    pkginfo: 1.5.0.1
    prompt-toolkit: 3.0.7
    psutil: 5.7.0
    ptyprocess: 0.6.0
    pycollada: 0.7.1
    pydicom: 2.0.0
    Pygments: 2.6.1
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 2.4.7
    PyQt5-commercial: 5.12.3
    PyQt5-sip: 4.19.19
    PyQtWebEngine-commercial: 5.12.1
    python-dateutil: 2.8.1
    pytz: 2020.1
    pyzmq: 19.0.2
    qtconsole: 4.7.4
    QtPy: 1.9.0
    RandomWords: 0.3.0
    requests: 2.24.0
    scipy: 1.4.1
    setuptools: 49.4.0
    sfftk-rw: 0.6.6.dev0
    six: 1.15.0
    snowballstemmer: 2.0.0
    sortedcontainers: 2.2.2
    Sphinx: 3.1.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 1.0.3
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.4
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2020.6.3
    tinyarray: 1.2.2
    tornado: 6.0.4
    traitlets: 5.0.4
    urllib3: 1.25.10
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.34.2

Change History (3)

comment:1 by Eric Pettersen, 5 years ago

Component: UnassignedPlatform
Owner: set to Tom Goddard
Platform: all
Project: ChimeraX
Status: newassigned
Summary: ChimeraX bug report submissionCrash on Big Sur with unhelpful stack

comment:2 by Tom Goddard, 5 years ago

We have 6 crash reports on macOS Big Sur so far. This is the first where the crash report has no symbols. Two others seemed to have the wrong symbols. Maybe they will improve Big Sur crash reporting when Apple gets enough useless crash reports.

comment:3 by Tom Goddard, 5 years ago

Resolution: can't reproduce
Status: assignedclosed
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