Opened 5 years ago

Last modified 5 years ago

#3969 assigned defect

"toolshed install" doesn't work with custom bundle

Reported by: daniel.palma.i@… Owned by: Greg Couch
Priority: normal Milestone:
Component: Tool Shed Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Linux-5.8.18-1-MANJARO-x86_64-with-arch-Manjaro-Linux
ChimeraX Version: 1.1 (2020-09-09 22:22:27 UTC)
Description
Trying to uninstall a custom bundle, toolshed uninstall doesn't work but doing it with chimerax -m pip uninstall works.

Log:
UCSF ChimeraX version: 1.1 (2020-09-09)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> usage xknot

"xknot" is not a command name  

> usage xknot

Subcommands are:

  * xknot closure
  * xknot core
  * xknot linearize
  * xknot polynomial
  * xknot simplify
  * xknot trielim
  * xknot visualize

  

> cd /home/danpal/code/chimerax/xknot

Current working directory is: /home/danpal/code/chimerax/xknot  

> devel clean .

  

> devel install .

running build  
running build_py  
creating build  
creating build/lib  
creating build/lib/chimerax  
creating build/lib/chimerax/xknot  
copying src/centroid.py -> build/lib/chimerax/xknot  
copying src/knots.py -> build/lib/chimerax/xknot  
copying src/loops.py -> build/lib/chimerax/xknot  
copying src/triangle.py -> build/lib/chimerax/xknot  
copying src/tool.py -> build/lib/chimerax/xknot  
copying src/__init__.py -> build/lib/chimerax/xknot  
copying src/utilities.py -> build/lib/chimerax/xknot  
running bdist_wheel  
installing to build/bdist.linux-x86_64/wheel  
running install  
running install_lib  
creating build/bdist.linux-x86_64  
creating build/bdist.linux-x86_64/wheel  
creating build/bdist.linux-x86_64/wheel/chimerax  
creating build/bdist.linux-x86_64/wheel/chimerax/xknot  
copying build/lib/chimerax/xknot/centroid.py ->
build/bdist.linux-x86_64/wheel/chimerax/xknot  
copying build/lib/chimerax/xknot/knots.py ->
build/bdist.linux-x86_64/wheel/chimerax/xknot  
copying build/lib/chimerax/xknot/loops.py ->
build/bdist.linux-x86_64/wheel/chimerax/xknot  
copying build/lib/chimerax/xknot/triangle.py ->
build/bdist.linux-x86_64/wheel/chimerax/xknot  
copying build/lib/chimerax/xknot/tool.py ->
build/bdist.linux-x86_64/wheel/chimerax/xknot  
copying build/lib/chimerax/xknot/__init__.py ->
build/bdist.linux-x86_64/wheel/chimerax/xknot  
copying build/lib/chimerax/xknot/utilities.py ->
build/bdist.linux-x86_64/wheel/chimerax/xknot  
running install_egg_info  
running egg_info  
creating ChimeraX_XKnot.egg-info  
writing ChimeraX_XKnot.egg-info/PKG-INFO  
writing dependency_links to ChimeraX_XKnot.egg-info/dependency_links.txt  
writing requirements to ChimeraX_XKnot.egg-info/requires.txt  
writing top-level names to ChimeraX_XKnot.egg-info/top_level.txt  
writing manifest file 'ChimeraX_XKnot.egg-info/SOURCES.txt'  
reading manifest file 'ChimeraX_XKnot.egg-info/SOURCES.txt'  
writing manifest file 'ChimeraX_XKnot.egg-info/SOURCES.txt'  
Copying ChimeraX_XKnot.egg-info to
build/bdist.linux-x86_64/wheel/ChimeraX_XKnot-0.1.0-py3.7.egg-info  
running install_scripts  
adding license file "LICENSE" (matched pattern "LICEN[CS]E*")  
creating build/bdist.linux-x86_64/wheel/ChimeraX_XKnot-0.1.0.dist-info/WHEEL  
creating 'dist/ChimeraX_XKnot-0.1.0-py3-none-any.whl' and adding
'build/bdist.linux-x86_64/wheel' to it  
adding 'chimerax/xknot/__init__.py'  
adding 'chimerax/xknot/centroid.py'  
adding 'chimerax/xknot/knots.py'  
adding 'chimerax/xknot/loops.py'  
adding 'chimerax/xknot/tool.py'  
adding 'chimerax/xknot/triangle.py'  
adding 'chimerax/xknot/utilities.py'  
adding 'ChimeraX_XKnot-0.1.0.dist-info/LICENSE'  
adding 'ChimeraX_XKnot-0.1.0.dist-info/METADATA'  
adding 'ChimeraX_XKnot-0.1.0.dist-info/WHEEL'  
adding 'ChimeraX_XKnot-0.1.0.dist-info/top_level.txt'  
adding 'ChimeraX_XKnot-0.1.0.dist-info/RECORD'  
removing build/bdist.linux-x86_64/wheel  
Distribution is in ./dist/ChimeraX_XKnot-0.1.0-py3-none-any.whl  
[toolshed install](help:user/commands/toolshed.html#install)  
./dist/ChimeraX_XKnot-0.1.0-py3-none-any.whl  
  
[toolshed install ./dist/ChimeraX_XKnot-0.1.0-py3-none-any.whl](cxcmd:toolshed  
install ./dist/ChimeraX_XKnot-0.1.0-py3-none-any.whl)  
  
Successfully installed ChimeraX-XKnot-0.1.0  
Installed ChimeraX-XKnot (0.1.0)  
FYI: command is replacing existing command: "xknot simplify"  
FYI: command is replacing existing command: "xknot closure"  
FYI: command is replacing existing command: "xknot polynomial"  
FYI: command is replacing existing command: "xknot core"  
FYI: command is replacing existing command: "xknot visualize"  
FYI: command is replacing existing command: "xknot linearize"  
FYI: command is replacing existing command: "xknot trielim"  
  

> ui tool show "Knot Visualization"

> toolshed uninstall XKnot

Traceback (most recent call last):  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/distlib/metadata.py", line 675, in __init__  
self._data = json.loads(data)  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/json/__init__.py", line 348,
in loads  
return _default_decoder.decode(s)  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/json/decoder.py", line 337,
in decode  
obj, end = self.raw_decode(s, idx=_w(s, 0).end())  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/json/decoder.py", line 355,
in raw_decode  
raise JSONDecodeError("Expecting value", s, err.value) from None  
json.decoder.JSONDecodeError: Expecting value: line 1 column 1 (char 0)  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/chimerax/cmd_line/tool.py", line 275, in execute  
cmd.run(cmd_text)  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/chimerax/core/commands/cli.py", line 2805, in run  
result = ci.function(session, **kw_args)  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/chimerax/core/commands/toolshed.py", line 328, in toolshed_uninstall  
ts.uninstall_bundle(bundles, logger, session=session,
force_remove=force_remove)  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/chimerax/core/toolshed/__init__.py", line 926, in uninstall_bundle  
_uninstall_bundle(self, bundle, logger, session=session,
force_remove=force_remove)  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/chimerax/toolshed_utils/__init__.py", line 409, in _uninstall_bundle  
needed_by = bi.dependents(logger)  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/chimerax/core/toolshed/info.py", line 571, in dependents  
for d in DistributionPath().get_distributions():  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/distlib/database.py", line 213, in get_distributions  
self._generate_cache()  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/distlib/database.py", line 167, in _generate_cache  
for dist in self._yield_distributions():  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/distlib/database.py", line 148, in _yield_distributions  
metadata = Metadata(fileobj=stream, scheme='legacy')  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/distlib/metadata.py", line 685, in __init__  
scheme=scheme)  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/distlib/metadata.py", line 259, in __init__  
self.read_file(fileobj)  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/distlib/metadata.py", line 357, in read_file  
self.set(field, value)  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/distlib/metadata.py", line 457, in set  
if not scheme.is_valid_constraint_list(value):  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/distlib/version.py", line 713, in is_valid_constraint_list  
return self.is_valid_matcher('dummy_name (%s)' % s)  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/distlib/version.py", line 703, in is_valid_matcher  
self.matcher(s)  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/distlib/version.py", line 116, in __init__  
'%r constraints' % op)  
ValueError: '.*' not allowed for '>=' constraints  
  
ValueError: '.*' not allowed for '>=' constraints  
  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/distlib/version.py", line 116, in __init__  
'%r constraints' % op)  
  
See log for complete Python traceback.  
  

> toolshed uninstall XKnot

Traceback (most recent call last):  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/distlib/metadata.py", line 675, in __init__  
self._data = json.loads(data)  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/json/__init__.py", line 348,
in loads  
return _default_decoder.decode(s)  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/json/decoder.py", line 337,
in decode  
obj, end = self.raw_decode(s, idx=_w(s, 0).end())  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/json/decoder.py", line 355,
in raw_decode  
raise JSONDecodeError("Expecting value", s, err.value) from None  
json.decoder.JSONDecodeError: Expecting value: line 1 column 1 (char 0)  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/chimerax/cmd_line/tool.py", line 275, in execute  
cmd.run(cmd_text)  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/chimerax/core/commands/cli.py", line 2805, in run  
result = ci.function(session, **kw_args)  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/chimerax/core/commands/toolshed.py", line 328, in toolshed_uninstall  
ts.uninstall_bundle(bundles, logger, session=session,
force_remove=force_remove)  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/chimerax/core/toolshed/__init__.py", line 926, in uninstall_bundle  
_uninstall_bundle(self, bundle, logger, session=session,
force_remove=force_remove)  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/chimerax/toolshed_utils/__init__.py", line 409, in _uninstall_bundle  
needed_by = bi.dependents(logger)  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/chimerax/core/toolshed/info.py", line 571, in dependents  
for d in DistributionPath().get_distributions():  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/distlib/database.py", line 213, in get_distributions  
self._generate_cache()  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/distlib/database.py", line 167, in _generate_cache  
for dist in self._yield_distributions():  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/distlib/database.py", line 148, in _yield_distributions  
metadata = Metadata(fileobj=stream, scheme='legacy')  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/distlib/metadata.py", line 685, in __init__  
scheme=scheme)  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/distlib/metadata.py", line 259, in __init__  
self.read_file(fileobj)  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/distlib/metadata.py", line 357, in read_file  
self.set(field, value)  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/distlib/metadata.py", line 457, in set  
if not scheme.is_valid_constraint_list(value):  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/distlib/version.py", line 713, in is_valid_constraint_list  
return self.is_valid_matcher('dummy_name (%s)' % s)  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/distlib/version.py", line 703, in is_valid_matcher  
self.matcher(s)  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/distlib/version.py", line 116, in __init__  
'%r constraints' % op)  
ValueError: '.*' not allowed for '>=' constraints  
  
ValueError: '.*' not allowed for '>=' constraints  
  
File "/home/danpal/lib/chimerax-1.1/lib/python3.7/site-
packages/distlib/version.py", line 116, in __init__  
'%r constraints' % op)  
  
See log for complete Python traceback.  
  




OpenGL version: 4.6 (Core Profile) Mesa 20.2.2
OpenGL renderer: AMD Radeon(TM) Vega 8 Graphics (RAVEN, DRM 3.38.0, 5.8.18-1-MANJARO, LLVM 11.0.0)
OpenGL vendor: X.Org
Manufacturer: Acer
Model: Aspire A315-41
OS: Manjaro Linux 20.2 Nibia
Architecture: 64bit ELF
CPU: 8 AMD Ryzen 5 2500U with Radeon Vega Mobile Gfx
Cache Size: 512 KB
Memory:
	              total        used        free      shared  buff/cache   available
	Mem:           10Gi       4.3Gi       659Mi       139Mi       5.7Gi       5.9Gi
	Swap:          22Gi       1.0Mi        22Gi

Graphics:
	03:00.0 VGA compatible controller [0300]: Advanced Micro Devices, Inc. [AMD/ATI] Raven Ridge [Radeon Vega Series / Radeon Vega Mobile Series] [1002:15dd] (rev c4)	
	Subsystem: Acer Incorporated [ALI] Device [1025:1259]	
	Kernel driver in use: amdgpu
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.9
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    argparse: 1.4.0
    astroid: 2.4.2
    Babel: 2.8.0
    backcall: 0.2.0
    biopython: 1.78
    blockdiag: 2.0.1
    certifi: 2020.6.20
    chardet: 3.0.4
    ChimeraX-AddH: 2.1.1
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.1
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.6.1
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 1.0.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.0
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.0
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.1
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.0
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-CommandLine: 1.1.3
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.1
    ChimeraX-CoreFormats: 1.0
    ChimeraX-coulombic: 1.0.1
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CythonTest: 0.3.1
    ChimeraX-DataFormats: 1.0
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.0
    ChimeraX-Hbonds: 2.0
    ChimeraX-Help: 1.0
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.0
    ChimeraX-ImageFormats: 1.0
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0
    ChimeraX-Label: 1.0
    ChimeraX-LinuxSupport: 1.0
    ChimeraX-ListInfo: 1.0
    ChimeraX-Log: 1.1.1
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Map: 1.0.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.0
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 1.1
    ChimeraX-MDcrds: 2.0
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.0
    ChimeraX-mmCIF: 2.2
    ChimeraX-MMTF: 2.0
    ChimeraX-Modeller: 1.0
    ChimeraX-ModelPanel: 1.0
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.0
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0
    ChimeraX-OpenCommand: 1.2.1
    ChimeraX-PDB: 2.1
    ChimeraX-PDBBio: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0
    ChimeraX-PubChem: 2.0
    ChimeraX-Read-Pbonds: 1.0
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.0
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.2
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SeqView: 2.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.0
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.0
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.0.4
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.0
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.0
    ChimeraX-ToolshedUtils: 1.0
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.2.3
    ChimeraX-uniprot: 2.0
    ChimeraX-ViewDockX: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-XKnot: 0.1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.3
    comtypes: 1.1.7
    cxservices: 1.0
    cycler: 0.10.0
    Cython: 0.29.20
    decorator: 4.4.2
    distlib: 0.3.1
    distro: 1.5.0
    docutils: 0.16
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 2.10.0
    html2text: 2020.1.16
    idna: 2.10
    ihm: 0.16
    imagecodecs: 2020.5.30
    imagecodecs-lite: 2020.1.31
    imagesize: 1.2.0
    ipykernel: 5.3.0
    ipython: 7.15.0
    ipython-genutils: 0.2.0
    isort: 5.6.4
    jedi: 0.17.2
    Jinja2: 2.11.2
    jupyter-client: 6.1.3
    jupyter-core: 4.6.3
    kiwisolver: 1.2.0
    lazy-object-proxy: 1.4.3
    line-profiler: 2.1.2
    lxml: 4.5.1
    MarkupSafe: 1.1.1
    matplotlib: 3.2.1
    mccabe: 0.6.1
    msgpack: 1.0.0
    netifaces: 0.10.9
    networkx: 2.4
    numexpr: 2.7.1
    numpy: 1.18.5
    numpydoc: 1.0.0
    openvr: 1.12.501
    packaging: 20.4
    parso: 0.7.1
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 7.1.2
    pip: 20.2.2
    pkginfo: 1.5.0.1
    prompt-toolkit: 3.0.7
    psutil: 5.7.0
    ptyprocess: 0.6.0
    pycollada: 0.7.1
    pydicom: 2.0.0
    Pygments: 2.6.1
    pylint: 2.6.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 2.4.7
    PyQt5-commercial: 5.12.3
    PyQt5-sip: 4.19.19
    PyQtWebEngine-commercial: 5.12.1
    python-dateutil: 2.8.1
    pytz: 2020.1
    pyzmq: 19.0.2
    qtconsole: 4.7.4
    QtPy: 1.9.0
    RandomWords: 0.3.0
    requests: 2.24.0
    scipy: 1.4.1
    setuptools: 49.4.0
    sfftk-rw: 0.6.6.dev0
    six: 1.15.0
    snowballstemmer: 2.0.0
    sortedcontainers: 2.2.2
    Sphinx: 3.1.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 1.0.3
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.4
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2020.6.3
    tinyarray: 1.2.2
    toml: 0.10.2
    topoly: 0.9.8
    tornado: 6.0.4
    traitlets: 5.0.4
    typed-ast: 1.4.1
    urllib3: 1.25.10
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.34.2
    wrapt: 1.12.1

Change History (1)

comment:1 by Eric Pettersen, 5 years ago

Component: Unassigned → Tool Shed
Owner: set to Greg Couch
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → "toolshed install" doesn't work with custom bundle

Reported by Daniel Palma Igor

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