Timeline



Aug 3, 2020:

10:36 PM Ticket #3501 (Problem saving map: No such file or directory) closed by Tom Goddard
can't reproduce: If this os.getcwd() error is reported again I'll add some code on …
10:29 PM Ticket #3521 (Many graphics errors) closed by Tom Goddard
fixed: I have a new theory about this error. It is hard to get an out of …
10:07 PM Ticket #3503 (Main graphics not shown when window maximized) closed by Tom Goddard
can't reproduce: No response from reporter.
9:55 PM Ticket #3478 (Could not get OpenGL vendor string) closed by Tom Goddard
fixed: Made OpenGL code not give further errors after reporting that the …
4:16 PM Ticket #3581 (Label position asked for before label drawn (and various other errors)) closed by Tom Goddard
fixed: Fixed. The mouse mode for moving a 2D label gave an error when some …
4:05 PM Ticket #3591 (ImportError: cannot import name 'normalize_vector' from 'chimerax.core') closed by Tom Goddard
fixed: Fixed. Wrong import statements used when running shape ribbon with …
3:31 PM Ticket #3584 (Spurious H added to nucleic P) closed by pett
fixed
3:01 PM Ticket #3591 (ImportError: cannot import name 'normalize_vector' from 'chimerax.core') created by Elaine Meng
[…]
2:19 PM Ticket #3589 (Saving instance in session) closed by pett
not a bug: For this case, you need to inherit from chimerax.state.StateManager
1:54 PM Ticket #3587 (Leave hydrogens intact if atom modification impossible) closed by pett
fixed
1:41 PM Ticket #3590 (Upcoming template-synonym change) created by Tristan Croll
[…]
12:03 PM Ticket #3588 (Remove deleted files from app) closed by pett
not a bug
11:02 AM Ticket #3579 (Crash rendering QML scene graph) closed by pett
can't reproduce: Another "QML-based" crash -- no idea.
10:49 AM Ticket #3577 (ChimeraX Display Problem on Windows 10 for Ryan Talbot) closed by pett
can't reproduce: Hi Ryan, Please upgrade to the 1.0 release of ChimeraX. It has …
10:46 AM Ticket #3563 (Timeout launching Modeller job) closed by pett
fixed: The web services are up now. --Eric
10:34 AM Ticket #3589 (Saving instance in session) created by Tristan Croll
[…]
4:51 AM Ticket #3588 (Remove deleted files from app) created by Tristan Croll
[…]
4:07 AM Ticket #3587 (Leave hydrogens intact if atom modification impossible) created by Tristan Croll
[…]

Aug 2, 2020:

9:09 AM Ticket #3586 (Automatic log compacting) created by Tristan Croll
[…]
8:25 AM Ticket #3585 (AddH: unusual positioning) created by Tristan Croll
[…] rna_weird_h.jpg
7:14 AM Ticket #3584 (Spurious H added to nucleic P) created by Tristan Croll
[…]
2:31 AM Ticket #3583 (Better feedback for loading CIF templates) created by Tristan Croll
[…] elbow.D3R_cif.001.cif

Aug 1, 2020:

10:48 PM Ticket #3582 (--offscreen does not work on Linux (or Mac, or Windows)) created by fglaser@…
[…] generate.V1.py
2:15 PM ChangeLog edited by Greg Couch
(diff)
12:24 PM Ticket #3581 (Label position asked for before label drawn (and various other errors)) created by henry.nguyen@…
[…]
10:16 AM Ticket #3580 (Toolshed uninstall: permission denied: install-timestamp) created by Tristan Croll
[…]
3:48 AM Ticket #3579 (Crash rendering QML scene graph) created by chimerax-bug-report@…
[…]

Jul 31, 2020:

8:59 PM Ticket #3570 (Morph mismatches protein glycans) closed by Tom Goddard
fixed: Fixed. I investigated how morph is messing up the glycans. According …
7:37 PM Ticket #3578 (Clipper: failure in French&Wilson treatment of intensities) created by roger.b.sutton@…
[…]
6:50 PM Ticket #3573 (Web services down) closed by pett
fixed: Hi Meghan, Web services should be working again. --Eric Eric …
11:50 AM Ticket #3577 (ChimeraX Display Problem on Windows 10 for Ryan Talbot) created by Ryan.Talbot@…
[…]
11:49 AM Ticket #3576 (Shape tube command color option gives error) closed by Tom Goddard
fixed: Fixed. The usual "if numpy-arrary then" error. Bad, bad numpy.
11:34 AM Ticket #3576 (Shape tube command color option gives error) created by goddard@…
[…]
10:14 AM Ticket #3575 (Make format_name optional in bundle_info.xml database fetch provider tag) created by Tom Goddard
The format_name provider tag attribute for fetching database files …
9:27 AM Ticket #3574 (Web services down) closed by pett
duplicate: Same as the other ticket -- web services unavailable outside UCSF
9:20 AM Ticket #3572 (Saving gltf: IndexError: tuple index out of range) closed by Tom Goddard
fixed: Fixed. If any model was undisplayed the saving GLTF format gave this …
6:44 AM Ticket #3574 (Web services down) created by grandal@…
[…]
6:44 AM Ticket #3573 (Web services down) created by grandal@…
[…]
6:09 AM Ticket #3572 (Saving gltf: IndexError: tuple index out of range) created by kristen.browne@…
[…]
2:52 AM Ticket #3571 (Periodic cache purging?) created by Tristan Croll
[…]
1:58 AM Ticket #3568 (OpenCL problem?) closed by Tristan Croll
duplicate: Addressed this in #3566 before reading this one.

Jul 30, 2020:

11:56 PM Ticket #3565 (Nucleotides: asking for distance from None) closed by Greg Couch
duplicate: Same solution as before. Update to ChimeraX 1.0 and this bug will go away.
11:53 PM Ticket #3564 (mmcif.find_template_residue() sometimes mistakenly claims template ...) closed by Greg Couch
fixed: You should expect it to fail sometimes. If the network is slow, then …
7:59 PM Ticket #3570 (Morph mismatches protein glycans) created by kristen.browne@…
The glycans fly all over the place when morphing between these two …
1:59 PM Ticket #3481 (scipy can't import _uarray) closed by Greg Couch
can't reproduce: This should have been fixed by the newer Visual Studio runtime that …
1:41 PM Ticket #3567 (scipy can't import _uarray) closed by pett
duplicate: duplicate of #3214 (but see #3481)
1:36 PM Ticket #3569 (Problem reading MTZ data: list index out of range) created by mks131@…
[…]
11:55 AM Ticket #3568 (OpenCL problem?) created by mks131@…
[…]
11:23 AM Ticket #3567 (scipy can't import _uarray) created by chimerax-bug-report@…
[…]
11:06 AM Ticket #3566 (OpenMM: No template found for residue) created by mks131@…
[…]
5:38 AM Ticket #3565 (Nucleotides: asking for distance from None) created by mks131@…
[…]
4:05 AM Ticket #3564 (mmcif.find_template_residue() sometimes mistakenly claims template ...) created by Tristan Croll
[…]
2:03 AM Ticket #3563 (Timeout launching Modeller job) created by tonyelin@…
[…]
1:10 AM Ticket #3562 ('OpenMM_Thread_Handler' object has no attribute '_c_pointer') created by mks131@…
[…]

Jul 29, 2020:

4:42 PM ChangeLog edited by Elaine Meng
(diff)
1:55 PM ChangeLog edited by Greg Couch
(diff)
1:13 PM Ticket #3561 (An invalid name request was made. The name requested cannot be ...) created by jpicker88@…
[…]
9:47 AM Ticket #3559 (Map fitting: map is None) closed by Tom Goddard
fixed: Fixed. Fit map panel was set to report new correlation values as user …
7:01 AM Ticket #3560 (figure 8 camera motion) created by Tristan Croll
[…]

Jul 28, 2020:

10:34 PM Ticket #3559 (Map fitting: map is None) created by chimerax-bug-report@…
[…]
2:40 PM Ticket #3558 (Session restore: Tried to add model with the same id as another model) created by jaremko@…
[…]
11:11 AM Ticket #3555 (Calvacade of GL errors) closed by Tom Goddard
nonchimerax: Framebuffer creation failed. Broken graphics driver. I added code to …
10:47 AM ChangeLog edited by pett
(diff)
8:44 AM Ticket #3557 (Open DICOM via icon: 'MainWindow' object has no attribute 'folder_open_cb') closed by pett
duplicate
3:25 AM Ticket #3557 (Open DICOM via icon: 'MainWindow' object has no attribute 'folder_open_cb') created by chimerax-bug-report@…
[…]
3:13 AM Ticket #3556 (A problem starting chimerax on Centos7) created by mohamad.harastani@…
[…]

Jul 27, 2020:

10:12 PM Ticket #3555 (Calvacade of GL errors) created by chimerax-bug-report@…
[…]
7:09 PM Ticket #725 (RFE: allow models to be immune to clipping) closed by Tom Goddard
fixed: Made drag select on clip disabled models work.
6:18 PM Ticket #3554 (Update clip caps only when changed so coloring is preserved) created by Elaine Meng
On Jul 27, 2020, at 4:57 PM, Tom Goddard <goddard@…> wrote: …
4:00 PM ChangeLog edited by Elaine Meng
(diff)
3:43 PM Ticket #3386 (Make header values available as residue attributes) closed by pett
fixed: As of tomorrow's build, alignment headers create residue attributes.
11:54 AM Ticket #3551 (PromoteAtomSelection._structure is deleted) closed by Tom Goddard
fixed: Fixed. Selection demotion was not checking for deleted structures.
11:22 AM Ticket #3550 (Problem saving spin movie / images to "Desktop" (C:\Users\Public\Desktop)) closed by Tom Goddard
not a bug: Saving an image with toolbar snapshot button fails, unable to write to …
10:44 AM Ticket #3546 (Save spin movie to desktop: Operation not permitted) closed by Tom Goddard
nonchimerax: Appears you denied permission for ChimeraX to access your Desktop so …
10:07 AM Ticket #3553 (FileNotFoundError: os.getcwd() opening recent file on macOS without ...) closed by Tom Goddard
fixed
10:03 AM Ticket #3553 (FileNotFoundError: os.getcwd() opening recent file on macOS without ...) created by goddard@…
[…]
10:02 AM Ticket #3549 (Old save-map GUI: 'NoneType' object has no attribute 'id_string') closed by pett
fixed: Hi Munmun, This problem is fixed in the ChimeraX 1.0 release. If you …
9:21 AM Ticket #3552 ("Install" button needs feedback; downloads slow) created by Tristan Croll
[…]
6:03 AM Ticket #3551 (PromoteAtomSelection._structure is deleted) created by Tristan Croll
[…]
5:56 AM Ticket #3550 (Problem saving spin movie / images to "Desktop" (C:\Users\Public\Desktop)) created by chimerax-bug-report@…
[…]

Jul 26, 2020:

12:02 AM Ticket #3549 (Old save-map GUI: 'NoneType' object has no attribute 'id_string') created by munmunbhasin@…
[…]

Jul 25, 2020:

1:10 PM Ticket #3548 (Nightly build test errors not reported on Linux) created by Tom Goddard
Appears that nightly build test suite errors are not reported on …
12:15 AM Ticket #3397 (ChimeraX: mmcif connectivity lost in some chains; OK in Coot  + PDB ...) closed by Greg Couch
fixed: GDP isn't broken. GDP's type is "RNA linking", ie., a polymeric …

Jul 24, 2020:

11:08 PM Ticket #3396 (Saving mmCIF: 'software' is None) closed by Greg Couch
duplicate: This is actually a duplicate of #3204 and has been fixed.
10:31 PM Ticket #3446 (mmCIF extremely slow when RCSB Ligand-expo site is down) closed by Greg Couch
fixed: Added negative caching of data files. If a data fetch fails, the …
3:40 PM Ticket #3547 (ChimeraX bug report submission) closed by Greg Couch
fixed: Found it.
3:37 PM Ticket #3547 (ChimeraX bug report submission) created by Greg Couch
[…]
2:50 PM Ticket #3546 (Save spin movie to desktop: Operation not permitted) created by jithesh.kottur@…
[…]

Jul 23, 2020:

3:45 PM ChangeLog edited by Tom Goddard
(diff)
3:10 PM Ticket #3544 (Better error handling for binary STL?) closed by Tom Goddard
fixed: Fixed. Added reading of ASCII STL files. Also ported Chimera SWC …
2:21 PM Ticket #3545 (Problem setting autochain attribute) closed by pett
not a bug: Hi Derek, Sorry, but the command even slightly more arcane that what …
2:01 PM Ticket #3545 (Problem setting autochain attribute) created by derek.harris@…
[…] FinalAlignNearco.cxs
9:11 AM Ticket #3543 (ChimeraX bug report submission) closed by pett
not a bug: UNK residues are supposed to be in ATOM records, not HETATM records.
2:28 AM Ticket #3544 (Better error handling for binary STL?) created by Tristan Croll
[…]
1:47 AM Ticket #3543 (ChimeraX bug report submission) created by Tristan Croll
[…] 6o24_final.pdb
12:23 AM Ticket #3263 (problems both saving and restoring nucleotides) closed by Greg Couch
can't reproduce: Unable to reproduce without session file.

Jul 22, 2020:

7:12 PM Ticket #3542 (Copy and paste Log html does not work on Windows) created by goddard@…
[…]
6:30 PM Ticket #3541 (Toolshed needs "Successfully installed" message in browser) created by goddard@…
[…]
2:57 PM Ticket #3357 (Add installed version numbers to the bug reporter) closed by Greg Couch
fixed: Done.
2:43 PM Ticket #3227 (Cannot import _uarray) closed by Greg Couch
fixed: No response. Internal testing shows that it was fixed.
1:23 PM ChangeLog edited by pett
(diff)
1:23 PM ChangeLog edited by pett
(diff)
1:22 PM ChangeLog edited by pett
(diff)
1:21 PM ChangeLog edited by pett
(diff)
1:12 PM Ticket #1878 (Smarter handling of ATOM/HETATM column 21) closed by pett
fixed: Tomorrow's build will have code to read/write two-character chain IDs …

Jul 21, 2020:

11:29 PM Ticket #3537 (Problem matching GLYCAM templates) closed by Tristan Croll
duplicate: Addressing in #3538
5:33 PM Ticket #3540 (Fetch question) closed by pett
not a bug: fetch_file is for fetching data files that ChimeraX caches. web_fetch …
5:01 PM Ticket #3540 (Fetch question) created by Greg Couch
[…]
2:04 PM Ticket #3532 (Registration error: month must be in 1..12) closed by Greg Couch
fixed
12:21 PM Ticket #3539 (Problems with large de novo mmCIF structure) created by Tristan Croll
[…] Tristan_working_edited_Sc_20July20.cif
12:05 PM Ticket #3538 (Problem matching GLYCAM templates) created by kartik.manne@…
[…]
12:04 PM Ticket #3537 (Problem matching GLYCAM templates) created by kartik.manne@…
[…]
8:48 AM Ticket #3536 (Graphics driver crash) closed by pett
can't reproduce
5:59 AM Ticket #3536 (Graphics driver crash) created by chimerax-bug-report@…
[…]

Jul 20, 2020:

2:40 PM Ticket #872 (Add chirality property to atoms) closed by pett
fixed: Okay, as of tomorrow chirality is available from a template Atom's …
1:12 PM Ticket #3535 (Nucleotides: asking for distance from None) created by mks131@…
[…]
10:27 AM Ticket #3533 (color-by-attr problem) closed by pett
fixed: Hi Santiago, This problem was caused by a relatively recent code …
10:16 AM Ticket #872 (Add chirality property to atoms) reopened by Tristan Croll
It's taken much (much!) longer for me to get to the point of properly …
9:46 AM Ticket #3531 (ChimeraX startup: unsupported locale setting) closed by pett
fixed: Hopefully fixed 4 days ago #3306
9:40 AM Ticket #3530 (setattr type conflict) closed by pett
not a bug: Hi Santiago, Values for attributes created with 'setattr' have to …
9:34 AM Ticket #3529 (Pseudobond redraw problem: cannot resize an array that references or ...) closed by pett
not a bug
9:05 AM Ticket #3534 (Parsing complaint about Ligand Expo cif files) created by Tristan Croll
[…] core_components.cif
7:02 AM Ticket #3533 (color-by-attr problem) created by santiago.jus.are@…
[…]

Jul 19, 2020:

8:37 PM Ticket #3532 (Registration error: month must be in 1..12) created by tony.schaefer@…
[…]
6:05 PM Ticket #3531 (ChimeraX startup: unsupported locale setting) created by chimerax-bug-report@…
[…]
8:48 AM Ticket #3530 (setattr type conflict) created by santiago.jus.are@…
[…]

Jul 18, 2020:

5:41 AM Ticket #3529 (Pseudobond redraw problem: cannot resize an array that references or ...) created by Tristan Croll
[…]
5:05 AM Ticket #3528 (Obsolete Blast hits) created by Tristan Croll
[…]
3:26 AM Ticket #3527 (pseudobond manager group_map property error when resetting session) created by p.albanese@…
[…]

Jul 17, 2020:

2:29 PM Ticket #3526 (Smorgasbord of GL errors) closed by Tom Goddard
can't reproduce: Same as #3521 and #3506, three different reporters. Out of memory in …
1:07 PM Ticket #3525 (Crash updating QQuickWindow) closed by pett
can't reproduce: I suspect this is related to ISOLDE's interface, since QQuickWindow is …
12:06 PM Ticket #3524 (Crash performing some kind of operation on a window) closed by pett
can't reproduce
12:02 PM Ticket #3523 (open .pdbqt: list index out of range) closed by pett
duplicate: Hi Santiago, Thanks for reporting this problem. It was fixed a few …
6:12 AM Ticket #3526 (Smorgasbord of GL errors) created by chimerax-bug-report@…
[…]
2:52 AM Ticket #3525 (Crash updating QQuickWindow) created by chimerax-bug-report@…
[…]
2:25 AM Ticket #3524 (Crash performing some kind of operation on a window) created by chimerax-bug-report@…
[…]

Jul 16, 2020:

2:50 PM Ticket #3523 (open .pdbqt: list index out of range) created by santiago.jus.are@…
[…]
1:00 PM Ticket #3522 (prevent installing incompatible bundles) created by Greg Couch
This will be eventually be handled by pip. But for now, we will need …
8:37 AM Ticket #3521 (Many graphics errors) created by bejis@…
[…]
1:29 AM Ticket #3306 (ChimeraX startup: unsupported locale setting) closed by Greg Couch
fixed: Changed code to use hardcoded strftime and strptime for our time …

Jul 15, 2020:

11:30 PM Ticket #3520 (Some kind of graphics crash running ISOLDE) created by ville.paavilainen@…
[…]
5:46 PM Ticket #3517 (webcam: QVideoFrame size (640,480) does not match expected image size) closed by Tom Goddard
fixed: Fixed. I made the webcam handle the case when the camera changes the …
3:56 PM Ticket #3519 (vseries arg not working) closed by pett
fixed: Indeed, just adding "batch='true'" to all formats fixed it. Fix …
2:18 PM Ticket #3516 (self._positions is None while dragging arrow) closed by pett
fixed: Catch non-2dlabels-command closure of arrows and remove those from …
11:38 AM Ticket #3477 (file names with spaces) closed by pett
not a bug: File names with spaces require quotes around them in an "open" …
10:35 AM Ticket #3173 (BLAST PDB web services being removed November 2020) reopened by pett
Updated Blast considerably slower because the new REST services don't …
9:26 AM Ticket #3518 (3D label: name 'session' is not defined) closed by Greg Couch
fixed: This was fixed the day after you downloaded ChimeraX. Please download …
9:21 AM Ticket #3519 (vseries arg not working) created by jaremko@…
[…]
5:12 AM Ticket #3518 (3D label: name 'session' is not defined) created by j.r.lewandowski@…
[…]
4:55 AM Ticket #3517 (webcam: QVideoFrame size (640,480) does not match expected image size) created by j.r.lewandowski@…
[…]
12:38 AM Ticket #3516 (self._positions is None while dragging arrow) created by chimerax-bug-report@…
[…]

Jul 14, 2020:

6:33 PM Ticket #3465 (tape measure to surface crashes) closed by Tom Goddard
can't reproduce: No reply from reporter.
6:29 PM Ticket #3513 (show_surface_clip_caps: Array argument has non-numeric values) closed by Tom Goddard
duplicate: Yeah, the clip cap error was also fixed the day after it was …
5:30 PM Ticket #3515 (Fetch biological assemblies from PDB for NIH 3D) created by phil.cruz@…
Phil Cruz and Darrell Hurt say the NIH 3D pipeline needs ChimeraX to …
5:26 PM Ticket #3510 (Problem drawing Pseudobond and/or saving session) closed by Tom Goddard
can't reproduce: It appears that you showed some distances, deleted some distances, …
4:59 PM Ticket #3504 (Stereo camera: glDrawBuffer invalid operation) closed by Tom Goddard
nonchimerax: For the spin movie problem it is good to inspect the error message …
3:40 PM Ticket #3514 (Type registration conflict) closed by pett
not a bug: Hi Jared, Thanks for reporting this problem. When setattr with …
1:30 PM Ticket #3514 (Type registration conflict) created by jbard@…
[…] eIF3a.cxc
10:47 AM Ticket #3173 (BLAST PDB web services being removed November 2020) closed by pett
fixed
10:09 AM Ticket #3513 (show_surface_clip_caps: Array argument has non-numeric values) created by chimerax-bug-report@…
[…]
9:28 AM Ticket #3512 (conference command: TimeoutError: [Errno 60] Operation timed out) created by goddard@…
[…]
8:40 AM Ticket #3511 (tape-measure mouse mode using dead MarkerSet) closed by pett
duplicate: Duplicate of #3457
7:22 AM Ticket #3511 (tape-measure mouse mode using dead MarkerSet) created by chimerax-bug-report@…
[…]
12:32 AM Ticket #3510 (Problem drawing Pseudobond and/or saving session) created by allenwu1991@…
[…]

Jul 13, 2020:

5:33 PM Ticket #3353 (Flatten bundle hierarchy) closed by Tom Goddard
fixed: I flattened map.data, map.fit, map.filter, map.series to map_data, …
4:13 PM Ticket #3506 (GL error extravaganza) closed by Tom Goddard
nonchimerax: All "out of memory" errors in OpenGL calls including Qt gui drawing …
3:38 PM Ticket #3509 (Chain KeyError opening Phenix CIF file) closed by pett
fixed: Hi Henry, I believe this problem is fixed in the daily build (your …
2:58 PM Ticket #3509 (Chain KeyError opening Phenix CIF file) created by henry.nguyen@…
[…] full_mNb6_rsr24-coot-5.deposit_000.cif
2:28 PM Ticket #3507 (3D labels: name 'session' is not defined) closed by Greg Couch
fixed: Fixed.
2:06 PM Ticket #3505 (UnicodeDecodeError reading ZINC .pdbqt file) closed by pett
fixed: Switched ViewdockX code from using open() directly to …
12:25 PM Ticket #3508 (ISOLDE's self.selected_model is dead) created by gyadav@…
[…]
12:00 PM Ticket #3507 (3D labels: name 'session' is not defined) created by ubaumann@…
[…]
10:38 AM Ticket #3506 (GL error extravaganza) created by chimerax-bug-report@…
[…]
10:20 AM Ticket #3505 (UnicodeDecodeError reading ZINC .pdbqt file) created by chimerax-bug-report@…
[…]
8:54 AM Ticket #3499 (Save dialog: wrapped C/C++ object of type SaveOptionsWidget has been ...) closed by pett
duplicate: Hi Eva, Thanks for reporting this problem. It was fixed a couple of …
8:45 AM Ticket #3504 (Stereo camera: glDrawBuffer invalid operation) created by ulrich@…
[…]
7:37 AM Ticket #3503 (Main graphics not shown when window maximized) created by tillsten@…
[…]
2:18 AM Ticket #3502 ("realistic" lipid bilayer depiction) created by Tristan Croll
[…] complex_i_images.tar.gz

Jul 12, 2020:

3:31 PM Ticket #3501 (Problem saving map: No such file or directory) created by prive@…
[…]
8:30 AM Ticket #3500 (Problem simulating glycans) created by mar2294@…
[…]
4:45 AM Ticket #3499 (Save dialog: wrapped C/C++ object of type SaveOptionsWidget has been ...) created by eva.bertosin@…
[…]

Jul 10, 2020:

8:41 AM Ticket #3496 (DICOM icon: 'MainWindow' object has no attribute 'folder_open_cb') closed by pett
duplicate: Hi, Thanks for reporting this problem. It was fixed around the …
6:31 AM Ticket #3498 ("conference start": Connection reset by peer) created by phil.cruz@…
[…]
5:41 AM Ticket #3497 (Bundle builder failing on Mac) created by Tristan Croll
[…]

Jul 9, 2020:

11:57 PM Ticket #3496 (DICOM icon: 'MainWindow' object has no attribute 'folder_open_cb') created by g.ysuda@…
[…]
5:16 PM ChangeLog edited by Elaine Meng
(diff)
5:15 PM ChangeLog edited by Elaine Meng
(diff)
4:30 PM Ticket #3495 (ViewDockX no longer handling .pdbqt file) closed by pett
fixed: Hi Caitlyn, Thanks for reporting this problem. I have just fixed it, …
3:55 PM Ticket #3494 (Graphics driver / shader crash(?)) closed by Tom Goddard
nonchimerax: Typical Apple Intel graphics driver crash: "Graphics hardware …
3:48 PM Ticket #3493 (Strudel Score: self.map_chim is None) closed by pett
nonchimerax
3:06 PM Ticket #3495 (ViewDockX no longer handling .pdbqt file) created by tongc@…
[…] 4hydroxytamoxifen_outF1.pdbqt
12:06 PM Ticket #3210 (develop stragegy for updating JavaScript toolkits embedded in ui module) closed by Greg Couch
wontfix
12:05 PM Ticket #3158 (Bogus Linux test failures) closed by Greg Couch
fixed: Redid linux build script to avoid this.
11:53 AM Ticket #3491 (Cannot save session containing tinyarray.ndarray_float) closed by Greg Couch
fixed: Fixed. Serialization code understood tinyarrays, but the layer above …
11:29 AM Ticket #3494 (Graphics driver / shader crash(?)) created by chimerax-bug-report@…
[…]
10:01 AM Ticket #3493 (Strudel Score: self.map_chim is None) created by chimerax-bug-report@…
[…]
1:30 AM Ticket #3492 (Try to continue on past session-restore error) created by Tristan Croll
[…]

Jul 8, 2020:

7:45 PM ChangeLog edited by Tom Goddard
(diff)
7:44 PM ChangeLog edited by Tom Goddard
(diff)
5:46 PM Ticket #2111 (SetupTools version number "normalisation" breaks bundle_builder) closed by Greg Couch
fixed: Bundle builder now canonicalizes the version number to match setuptools.
5:44 PM Ticket #3084 (Inserted fragments should update missing-structure pseudobonds) reopened by pett
3:30 PM Ticket #3488 (Need Info.plist description of camera usage) closed by Tom Goddard
fixed: Fixed. Current Mac ChimeraX daily build on download page now has …
2:37 PM Ticket #3491 (Cannot save session containing tinyarray.ndarray_float) created by r.frank@…
[…] chimerax_error.md
10:41 AM Ticket #3471 (Probable memory corruption) closed by pett
fixed: Fix available in next daily build.
9:27 AM Ticket #3489 (Probable memory corruption) closed by pett
duplicate: This is duplicate to both #3484 and #3471

Jul 7, 2020:

6:12 PM Ticket #3487 (Need Info.plist description of camera usage) closed by Tom Goddard
duplicate: I believe the crash is because the notarized ChimeraX uses Apple's …
5:07 PM Ticket #3490 (add restart button to dialog that says updated bundle is in use) created by Greg Couch
See ticket #3485 for the confusion. There should be two buttons …
4:16 PM Ticket #3486 ("webcam on" command does not work on Windows) closed by Tom Goddard
not a bug: The webcam command is not in ChimeraX 1.0. It was added 2 days ago …
2:15 PM Ticket #3489 (Probable memory corruption) created by goddard@…
[…]
11:20 AM Ticket #3488 (Need Info.plist description of camera usage) created by avradip.chatterjee@…
[…]
10:33 AM Ticket #3487 (Need Info.plist description of camera usage) created by chimerax-bug-report@…
[…]
9:49 AM Ticket #3486 ("webcam on" command does not work on Windows) created by samimishu@…
[…]
9:01 AM Ticket #3485 (Problem with installation) closed by pett
not a bug: Hi Sepideh, That message simply means that the updated ISOLDE bundle …
8:58 AM Ticket #3484 (Probable memory corruption) closed by pett
duplicate: Added information to ticket #3471

Jul 6, 2020:

3:27 PM Ticket #3485 (Problem with installation) created by svalimehr@…
[…] [[Image(...)]]
12:35 PM Ticket #3484 (Probable memory corruption) created by philipp.milkereit@…
[…]
10:19 AM StartDaily created by Tom Goddard
10:16 AM WikiStart edited by Tom Goddard
(diff)
9:06 AM Ticket #3482 (Movie recording problem) closed by pett
duplicate: Redirected to chimera-users list
8:53 AM Ticket #3480 (Opening BLAST hit: 'NoneType' object is not subscriptable) closed by pett
fixed: This has been fixed in the daily build for a week or two. Hopefully …
8:47 AM Ticket #3479 (Save dialog: wrapped C/C++ object of type SaveOptionsWidget has been ...) closed by pett
fixed
5:14 AM Ticket #3483 (Crash in garbage collection during session restore) created by chimerax-bug-report@…
[…]

Jul 5, 2020:

11:27 AM Ticket #3482 (Movie recording problem) created by arecco.niccolo@…
[…] 6NQ3_Suz12_AS_event.cxc

Jul 4, 2020:

3:36 PM Ticket #3481 (scipy can't import _uarray) created by chimerax-bug-report@…
[…]
6:18 AM Ticket #3480 (Opening BLAST hit: 'NoneType' object is not subscriptable) created by Tristan Croll
[…]
Note: See TracTimeline for information about the timeline view.