Timeline



Mar 10, 2020:

6:51 PM Ticket #2937 (Segmentation fault in Point_List::bounding_box() for large models (?)) closed by Tom Goddard
fixed: Fixed. I made find_close_points() handle large map sizes using 64-bit …
3:05 PM Ticket #2940 (subclassable AtomicStructure) closed by pett
fixed: Hi Ben, I have added the set_state_from_snapshot support to …
11:40 AM Ticket #2845 (VR hand controllers swapped, Oculus Rift S) closed by Tom Goddard
fixed: Fixed. The controller role is not assigned correctly when waking. I …
8:41 AM Ticket #2850 (_openmm could not be found) closed by Tristan Croll
duplicate: Duplicate of #2771.
8:40 AM Ticket #2879 (openmm/swig: type object 'object' has no attribute '__getattr__') closed by Tristan Croll
fixed: Bug is fixed in more recent builds. Just for reference: the traceback …
8:36 AM Ticket #2884 (OpenMM: Error initializing context: clGetDeviceIDs) closed by Tristan Croll
fixed: I'll close this as fixed - it won't truly be until OpenMM 7.5 is …
4:42 AM Ticket #2875 (ISOLDE imports obsolete MainToolWindow from core.ui) closed by Tristan Croll
fixed: Fixed. Will be in the next build (an "official" ISOLDE release to go …

Mar 9, 2020:

5:06 PM Ticket #2940 (subclassable AtomicStructure) created by Ben Webb
[…]
4:50 PM ChangeLog edited by pett
(diff)
4:13 PM ChangeLog edited by Elaine Meng
(diff)
4:07 PM Ticket #2939 (Iconify main window does not iconify other windows) created by goddard@…
[…]
3:58 PM Ticket #2930 ("preframe" off by 1 during recorded morph) closed by Tom Goddard
not a bug: The problem is that you are doing two things at each frame, you …
3:44 PM ChangeLog edited by Elaine Meng
(diff)
2:58 PM Ticket #2928 (Pure translation morph not correct) closed by Tom Goddard
fixed: Fixed. The corkscrew motion done by morph to handle a model rotation …
1:14 PM Ticket #2904 (apt-get install failed for ubuntu 19.10) closed by Greg Couch
worksforme: The package dependencies are reasonable.
12:41 PM Ticket #2938 (command to re-show chain table) created by Elaine Meng
Would be really useful to add a command to re-show the chain table …
12:13 PM Ticket #2085 (Crash in Qt in Mac graphics driver) reopened by Tom Goddard
This crash was not eliminated by the June 24, 2019 code change to …
11:26 AM Ticket #2931 (Built in method to profile trigger firings) closed by pett
fixed: Have added the code from your diff. There are various C++ things that …
11:02 AM Ticket #2934 (Adding coord sets) reopened by Tom Goddard
Coordinate sets behave in a somewhat unexpected way when you add and …
10:43 AM Ticket #2934 (Adding coord sets) closed by pett
duplicate: Follow up to #2926
10:33 AM Ticket #2924 (Attempt to link markers in different models) closed by Tom Goddard
fixed: Made better error message with no traceback. Markers could be …
6:42 AM Ticket #2937 (Segmentation fault in Point_List::bounding_box() for large models (?)) created by Tristan Croll
I've been seeing a quite intermittent segmentation fault lately when …
4:29 AM Ticket #2931 (Built in method to profile trigger firings) reopened by Tristan Croll
Just attached a diff with an extra method exposing it to the …

Mar 7, 2020:

4:17 PM Ticket #2936 (MemoryError saving session) created by chimerax-bug-report@…
[…]
5:32 AM Ticket #2935 (Crash drawing Qt interface) created by llsis@…
[…]

Mar 7, 2020:

5:10 PM ChangeLog edited by Greg Couch
(diff)
12:12 PM Milestone 0.92 completed
Dependency updates, including * Python 3.7.6 (no OpenMM for 3.8) * QT …
6:44 AM Ticket #2934 (Adding coord sets) created by tony.schaefer@…
[…]

Mar 6, 2020:

1:51 PM Ticket #2931 (Built in method to profile trigger firings) closed by pett
fixed: This change seems useful. I have applied it and it will be in the …
11:29 AM Ticket #2925 (Bizarre handling of save-image dispatching) closed by pett
can't reproduce: Presumably this will become moot with the open/save reimplementation. …
10:50 AM Ticket #2921 (Crash in QtWebEngineCore) closed by pett
can't reproduce
9:10 AM Ticket #2933 (Window management UI suggestions) created by charles.sindelar@…
[…]
8:42 AM Ticket #2932 (View transition "jumpy") created by charles.sindelar@…
[…]
8:37 AM Ticket #2931 (Built in method to profile trigger firings) created by Tristan Croll
I'm once again doing some profiling (trying to work out why adding an …
7:26 AM Ticket #2930 ("preframe" off by 1 during recorded morph) created by charles.sindelar@…
[…] test3.mov
7:23 AM Ticket #2929 (ChimeraX header files not present in CentOS RPM) created by Tristan Croll
Trying to build Clipper against today's daily build (CentOS): […] …
7:18 AM Ticket #2928 (Pure translation morph not correct) created by charles.sindelar@…
[…]
5:47 AM Ticket #2927 (Docked widgets not redrawn) created by Tristan Croll
This has happened in my presence twice now. The first time was in my …

Mar 5, 2020:

8:53 PM Ticket #2926 (Adding coord sets) created by tony.schaefer@…
[…] coordsets.cxs
7:52 PM Ticket #2925 (Bizarre handling of save-image dispatching) created by chimerax-bug-report@…
[…]
7:27 PM Ticket #2924 (Attempt to link markers in different models) created by rohou.alexis@…
[…]
6:04 PM Ticket #2890 (Font startup cost) closed by Tom Goddard
fixed: No longer get the font warning with Qt 5.12. It appears to be a …
5:59 PM Ticket #2922 (OpenGL buffer not deleted) closed by Tom Goddard
fixed: Fixed. Sequence panel status bar did not release opengl resources …
5:34 PM Ticket #2907 (Chimera Modeller Issue) closed by pett
not a bug
5:26 PM Ticket #2912 (Crash updating shader state (changing surface color)) closed by Tom Goddard
can't reproduce: This crashed in the Qt window toolkit trying to redraw its windows. …
5:09 PM Ticket #2923 (better initial sequence viewer size) created by Elaine Meng
May need to use the ugly setMinimumHeight() trick that …
5:02 PM Ticket #2922 (OpenGL buffer not deleted) created by pett
open 2hyy # Show sequence panel by log click # Use context menu in seq …
4:32 PM Ticket #2921 (Crash in QtWebEngineCore) created by chimerax-bug-report@…
[…]
3:28 PM Ticket #2920 (distances GUI needs better update-notification mechanism) created by Elaine Meng
Closing a structure with a distance monitor does not clear out the …
11:31 AM Ticket #2916 (mlp won't color pre-existing surface enclosing more than one chain) closed by Tom Goddard
fixed: Fixed. I added an option "surfaces" to the mlp command to specify …

Mar 4, 2020:

4:43 PM Ticket #2914 ("color bynucleotide" changes unrelated colors) closed by Greg Couch
fixed: Fixed.
4:14 PM Ticket #2887 (No daily build for Generic Linux 64-bit) closed by Greg Couch
fixed: It's been fixed for several days now. Can you tell me which version …
3:40 PM Ticket #2870 (ChimeraX Help Viewer (browser) behaving strangely) closed by Tom Goddard
fixed
10:47 AM Ticket #2918 (Blast Protein failure + Attempted instantiation of HeaderSequence ...) closed by pett
duplicate
6:49 AM Ticket #2919 ("sequence chain" fails after chain lengthened) created by ym337@…
[…] 89422800_196038681466979_538118797567983616_n.jpg
3:12 AM Ticket #2918 (Blast Protein failure + Attempted instantiation of HeaderSequence ...) created by noemi.ruiz@…
[…]

Mar 3, 2020:

11:32 PM Ticket #2917 (BlaST web service: No alias or index file found for protein database) created by petevseev@…
[…]
2:36 PM Ticket #2916 (mlp won't color pre-existing surface enclosing more than one chain) created by Elaine Meng
If I make a surface enclosing both chains A and B and then run mlp, it …
1:39 PM Ticket #2915 (cannot save plain text file from Help Viewer) created by Elaine Meng
... or at least I can't figure out how to do it. I am trying to …
1:32 PM Ticket #2914 ("color bynucleotide" changes unrelated colors) created by Elaine Meng
[…]
1:22 PM Ticket #2913 (Full sequence info not copied into split chains) created by marta.perez@…
Need to expose set_input_seq_info() to Python and use it in the …
12:10 PM Ticket #2912 (Crash updating shader state (changing surface color)) created by j.r.lewandowski@…
[…]
11:25 AM Ticket #2911 (Problem restoring clip planes from session) closed by Tom Goddard
fixed: Fixed. Very old ChimeraX (May 2019) could apparently restore sessions …
7:52 AM Ticket #2911 (Problem restoring clip planes from session) created by chimerax-bug-report@…
[…]

Mar 2, 2020:

7:24 PM Ticket #2909 (ChimeraX bug report submission) closed by Tom Goddard
fixed: Fixed. VR panels list was not cleared when VR turned off.
6:59 PM Ticket #2910 (ChimeraX bug report submission) closed by Tom Goddard
duplicate: Duplicate of #2909
6:13 PM Ticket #2910 (ChimeraX bug report submission) created by goddard@…
[…]
6:13 PM Ticket #2909 (ChimeraX bug report submission) created by goddard@…
[…]
3:10 PM Ticket #2908 (Nucleotides slow) created by goddard@…
[…]
2:29 PM Ticket #2079 (Manager/provider for open/save dialog format options) closed by pett
duplicate: Now subsumed by #2806
12:10 PM Ticket #2907 (Chimera Modeller Issue) created by jcirilo@…
[…]
11:05 AM Ticket #2902 (Saved image is 1/4) closed by Tom Goddard
duplicate: This 1/4 image problem was a Mac driver issue. I think we added some …
11:02 AM Ticket #2903 (Requset of withdrawing the bug reporter log) closed by Tom Goddard
fixed: I deleted the log from from your bug report #2902.
10:54 AM Ticket #2901 (Crash in drawing (interface?) after opening PDB) closed by pett
duplicate: duplicate of
6:56 AM Ticket #2906 (Building OpenMM installer in devtoolset-7) created by Tristan Croll
I've just compiled working OpenMM 7.5 installer in devtoolset-7, …
3:28 AM Ticket #2905 (OpenMM: Multiple matching templates found for residue) created by pett@…
[…]

Mar 1, 2020:

10:18 AM Ticket #2904 (apt-get install failed for ubuntu 19.10) created by huatiger3@…
[…]

Feb 29, 2020:

8:43 PM Ticket #2903 (Requset of withdrawing the bug reporter log) created by mua@…
[…]
7:47 PM Ticket #2902 (Saved image is 1/4) created by mua@…
[…]
6:21 PM Ticket #2901 (Crash in drawing (interface?) after opening PDB) created by llsis@…
[…]
6:05 PM Ticket #2900 (Crash in drawing (interface?) after opening PDB) created by llsis@…
[…]

Feb 28, 2020:

10:16 PM Ticket #2880 (GCC 7.3 breaks ISOLDE) closed by Greg Couch
fixed
3:37 PM Ticket #2899 (Accidental submission) closed by pett
duplicate
3:36 PM Ticket #2898 (Shell does not start) closed by pett
duplicate: I don't think you were in fact working from a complete rebuild (or …
2:02 PM Ticket #2895 (Crash during close) closed by pett
fixed: Prevent firing of delayed Sequence triggers if no one is listening to …
1:06 PM Ticket #2899 (Accidental submission) created by pett
[…]
11:20 AM Ticket #2891 (Sequence viewer: 'OptionalRGBAOption' object has no attribute 'get') closed by pett
duplicate
11:20 AM Ticket #2891 (Sequence viewer: 'OptionalRGBAOption' object has no attribute 'get') reopened by pett
11:17 AM Ticket #2891 (Sequence viewer: 'OptionalRGBAOption' object has no attribute 'get') closed by pett
duplicate
10:13 AM Ticket #2894 (Errors when typing commands after conference close) closed by Conrad Huang
fixed: Fixed in d87ae6ba9. Forgot to turn off command relay when …

Feb 27, 2020:

11:08 PM Ticket #2898 (Shell does not start) created by Greg Couch
[…]
6:33 PM Ticket #2897 (Closing Side View opens empty dialog/window) created by tony.schaefer@…
[…]
5:31 PM Ticket #2896 (generic attribute selection slow) created by goddard@…
[…]
5:26 PM Ticket #2895 (Crash during close) created by goddard@…
[…]
5:16 PM Ticket #2783 (Disconnecting already-disconnected tooltip slot when click outside ...) closed by pett
fixed: This apparently "fixed itself" with later versions of the packages …
4:52 PM Ticket #2894 (Errors when typing commands after conference close) created by goddard@…
[…]
4:51 PM Ticket #2893 (conference does not send models to participants) created by goddard@…
[…]
4:49 PM Ticket #2892 (conference does not send models to participant) created by goddard@…
[…]
2:03 PM Ticket #2891 (Sequence viewer: 'OptionalRGBAOption' object has no attribute 'get') created by chimerax-bug-report@…
[…]
12:52 PM Ticket #2889 (Crash drawing Qt interface) closed by pett
duplicate: duplicate of
11:00 AM ChangeLog edited by Elaine Meng
(diff)

Feb 26, 2020:

8:22 PM Ticket #2886 (error showing image map colored by index-map segmentation) closed by Tom Goddard
fixed: Fixed. Segmentation coloring on a map which was never shown in image …
6:42 PM Ticket #2890 (Font startup cost) created by goddard@…
[…]
5:14 PM Ticket #2889 (Crash drawing Qt interface) created by llsis@…
[…]
4:51 PM Ticket #2888 (Crash drawing Qt interface) created by llsis@…
[…]
4:42 PM Ticket #2887 (No daily build for Generic Linux 64-bit) created by petr.pachl@…
[…]
11:22 AM Ticket #2886 (error showing image map colored by index-map segmentation) created by Elaine Meng
[…]
11:13 AM Ticket #2885 (2D arrows not restored from old sessions) closed by pett
fixed
10:38 AM Ticket #2881 (Shell does not start) closed by Conrad Huang
fixed: Fixed in 6d8525e5c. Added jupyter-client 5.3.4 as …
10:28 AM Ticket #2885 (2D arrows not restored from old sessions) created by Elaine Meng
[…] arrows.cxs

Feb 25, 2020:

8:09 PM Ticket #2884 (OpenMM: Error initializing context: clGetDeviceIDs) created by petrpachl@…
[…]
5:08 PM Ticket #2882 (Update download page to say macOS 10.13 is required) closed by Greg Couch
fixed: Changes on the preview site. Will be on main site tomorrow.
4:54 PM Ticket #2883 ("seg colors" command traceback if specifying surface model with map keyword) closed by Tom Goddard
fixed: Fixed. The segmentation colors command was trying to give an error …
4:15 PM Ticket #2883 ("seg colors" command traceback if specifying surface model with map keyword) created by Elaine Meng
[…]
1:07 PM Ticket #2867 (Error finding files in same folder as session file (previously: Error ...) closed by Tom Goddard
fixed: If you eventually are able to reproduce the session restore error …
1:05 PM Ticket #2882 (Update download page to say macOS 10.13 is required) created by Tom Goddard
Download page needs update, says macOS 10.12 is required when in fact …
11:43 AM ChangeLog edited by pett
(diff)
11:42 AM ChangeLog edited by pett
(diff)

Feb 24, 2020:

11:51 PM Ticket #2881 (Shell does not start) created by Tristan Croll
[…]
11:50 PM Ticket #2880 (GCC 7.3 breaks ISOLDE) created by Tristan Croll
[…]
6:22 PM Ticket #2879 (openmm/swig: type object 'object' has no attribute '__getattr__') created by iche4489@…
[…]
1:57 PM Ticket #2868 (Trac browse source unusably slow) closed by Conrad Huang
fixed
10:52 AM Ticket #2878 (Crash in free_keys_object/subtype_dealloc) closed by pett
can't reproduce

Feb 23, 2020:

12:50 PM Ticket #2878 (Crash in free_keys_object/subtype_dealloc) created by chimerax-bug-report@…
[…]
11:32 AM Ticket #2869 (incorrect undo of roll specific model) closed by Conrad Huang
fixed: Fixed in 49f498967. Make multi-frame turns use the same …

Feb 22, 2020:

6:26 PM Ticket #2877 (VR sometimes freezes when resizing panels) created by Tom Goddard
VR sometimes freezes for several seconds when resizing panels by …
6:08 PM Ticket #2876 (core import hook makes non-equivalent classes) created by Tom Goddard
The input hook that allows "from chimerax.core.ui import …
5:58 PM Ticket #2875 (ISOLDE imports obsolete MainToolWindow from core.ui) created by goddard@…
[…]
7:51 AM Ticket #2874 (Crash drawing Qt widgets) created by llsis@…
[…]

Feb 21, 2020:

12:24 PM Ticket #2873 (PyQt icon image not changing) created by Tristan Croll
Probably won’t be able to get to the bottom of this myself until I get …
11:10 AM Ticket #2801 (Model Panel width too narrow) closed by pett
fixed: The latest hacky solution seems to work on Windows too.
10:02 AM Ticket #2872 (Make button to update metal coordination bonds) created by wilian.cortopassi@…
Would like a way to update metal coordination bonds when atoms of a …

Feb 20, 2020:

2:59 PM Ticket #2864 (Model Panel: 'Close' sometimes closes parent) closed by pett
fixed: Hi Tony, Thanks for pointing out this problem. Fixed in tomorrow's …
2:24 PM Ticket #2871 (Add speech recognition for running commands in VR) created by Tom Goddard
Conrad has added the speech ChimeraX bundle that uses the PyPi
1:41 PM Ticket #2865 (Problem saving MRC/PDB: name 'model' is not defined) closed by Tom Goddard
fixed: Fixed. The error message was supposed to say you specified a model …
1:05 PM Ticket #2870 (ChimeraX Help Viewer (browser) behaving strangely) created by Elaine Meng
(1) now when I start Help Viewer from the Help menu or by opening a …
12:02 PM Ticket #2866 (Crash in free_keys_object/subtype_dealloc) closed by pett
can't reproduce
11:45 AM Ticket #2869 (incorrect undo of roll specific model) created by Elaine Meng
The attached session square-assembly.cxs has two models #2.1 and #2.2 …
11:21 AM Ticket #2868 (Trac browse source unusably slow) created by Tom Goddard
Takes about 2 minutes to show ChimeraX Trac web page Browse Source. …
9:51 AM Ticket #2206 (Hang initializing bundles (bad cache?)) closed by Conrad Huang
can't reproduce: I was unable to reproduce this problem under a variety of different …
9:49 AM Ticket #2214 (Incorrect version of Clipper installed in ChimeraX 0.9) closed by Conrad Huang
fixed: Switched over to new scheme for tying bundles to specific ChimeraX …
9:47 AM Ticket #1305 (Need mechanism for restarting ChimeraX after installing in-use bundle) closed by Conrad Huang
fixed: Fixed in 71769061. When a package/module is already in …
8:18 AM Ticket #2867 (Error finding files in same folder as session file (previously: Error ...) created by wieland@…
[…]
4:33 AM Ticket #2866 (Crash in free_keys_object/subtype_dealloc) created by chimerax-bug-report@…
[…]

Feb 19, 2020:

11:14 PM Ticket #2865 (Problem saving MRC/PDB: name 'model' is not defined) created by doonam.kim@…
[…]
10:02 PM Ticket #2864 (Model Panel: 'Close' sometimes closes parent) created by tony.schaefer@…
[…] closing_children.zip
4:32 PM ChangeLog edited by Elaine Meng
(diff)
3:41 PM Ticket #2861 (Consecutive "view myname" commands only does first) closed by Tom Goddard
fixed: Fixed. The problem was not really related to clipping planes. It was …
1:14 PM Ticket #2801 (Model Panel width too narrow) reopened by Tom Goddard
Now the Model Panel starts out too wide on Windows, about 750 pixels wide.
6:21 AM Ticket #2863 (Side View: self.view.render is None) created by chimerax-bug-report@…
[…]
1:52 AM Ticket #2862 (view names need to be prevented from being the same as 'view' keywords) created by vadim.kotov@…
[…]
1:44 AM Ticket #2861 (Consecutive "view myname" commands only does first) created by vadim.kotov@…
[…] bug.cxc

Feb 18, 2020:

9:19 PM Ticket #2860 (Dead pseudobond group being saved in session) created by chimerax-bug-report@…
[…]
5:32 PM Ticket #2801 (Model Panel width too narrow) closed by pett
fixed: Okay, now that Model Panel will just stay the same width instead of …
2:20 PM Ticket #2856 (Surface cap update: 'NoneType' object has no attribute 'update_direction') closed by Tom Goddard
can't reproduce: Session restore appears to have put None in clip plane list in …
12:04 PM Ticket #2859 (Atoms/Bonds→Delete deletes all atoms if non-empty selection has no ...) closed by pett
fixed
11:07 AM Ticket #2858 (Crash in free_keys_object/subtype_dealloc) closed by pett
duplicate
10:45 AM Ticket #2859 (Atoms/Bonds→Delete deletes all atoms if non-empty selection has no ...) created by goddard@…
[…]
7:06 AM Ticket #2858 (Crash in free_keys_object/subtype_dealloc) created by chimerax-bug-report@…
[…]

Feb 16, 2020:

10:32 PM Ticket #2857 (Error showing VR tool window) closed by Tom Goddard
fixed: Fixed. Log panel was squished to zero size by creation of Build …
10:25 PM Ticket #2857 (Error showing VR tool window) created by goddard@…
[…]
9:06 PM Ticket #2856 (Surface cap update: 'NoneType' object has no attribute 'update_direction') created by chimerax-bug-report@…
[…]
6:34 PM Ticket #2855 (Command to run tests deprecated) created by Tom Goddard
On Windows building every bundle gives a deprecation warning when …
6:28 PM WindowsDevReq edited by Tom Goddard
(diff)
5:08 PM Ticket #2854 (Toolbar customization bug with multiple sections) created by olibclarke@…
[…] Screen Shot 2020-02-17 at 12.05.31 PM.png
4:28 PM Ticket #2853 (Windows build should not require pre-installed Python) created by Tom Goddard
In order to encourage outside developers our Windows build should not …

Feb 14, 2020:

4:18 PM Ticket #2851 (Undocked tools have no titlebar in VR) closed by Tom Goddard
fixed: Fixed by making VR add titlebars to docked and undocked widgets.
4:12 PM Ticket #2801 (Model Panel width too narrow) reopened by Tom Goddard
In Feb 13 Windows ChimeraX Model Panel still shrinks in width so that …
1:43 PM Ticket #2849 (Menu pane positioned wrong in VR) closed by Tom Goddard
fixed: Fixed. This is because the QMenu was created without a parent so the …
1:33 PM Ticket #2852 (Add "Show atoms" graphics window context menu) created by goddard@…
[…]
12:34 PM Ticket #2848 (Cascaded menus broken in VR) closed by Tom Goddard
fixed: Fixed. Made click and release on VR user interface panels update …
10:56 AM Ticket #2851 (Undocked tools have no titlebar in VR) created by Tom Goddard
If a tools is undocked it does not show a titlebar in VR. The …
10:56 AM Ticket #2850 (_openmm could not be found) created by chimerax-bug-report@…
[…]

Feb 13, 2020:

6:39 PM Ticket #2849 (Menu pane positioned wrong in VR) created by goddard@…
[…]
6:36 PM Ticket #2848 (Cascaded menus broken in VR) created by goddard@…
[…]
5:48 PM Ticket #2847 (Snapshot icons to save PDB, mmCIF, or session) created by Tom Goddard
Might have toolbar icons to save a structure to a PDB or mmCIF file on …
5:24 PM Ticket #2846 (VR laser pointer for picking) created by Tom Goddard
Wilian notes in the message below that VR bond rotation is difficult …
4:34 PM Ticket #2845 (VR hand controllers swapped, Oculus Rift S) created by goddard@…
[…]
4:13 PM Ticket #2790 (Long atom spec → grako recursion error) closed by Greg Couch
fixed: Fixed by increasing maximum stack size while parsing atom specifications.
2:02 PM Ticket #2572 (Atom matching occurring in input order rather than name order) closed by pett
fixed: "align" command now asks for the implied atoms to be sorted.
1:11 PM Ticket #2844 (Crash/hang encoding movie) closed by Tom Goddard
fixed: Fixed. Movie encoding was running ffmpeg which apparently looks for …
11:54 AM Ticket #2844 (Crash/hang encoding movie) created by lmillervedam@…
[…]
11:44 AM Ticket #2843 (Crash showing 316 million triangle surface) closed by Tom Goddard
nonchimerax: On a 590 million triangle surface (ticket #2842) it gave a OpenGL out …
11:42 AM Ticket #2842 (OpenGL out of memory on 590 million triangles) closed by Tom Goddard
nonchimerax
11:33 AM Ticket #2843 (Crash showing 316 million triangle surface) created by goddard@…
[…]
11:29 AM Ticket #2842 (OpenGL out of memory on 590 million triangles) created by goddard@…
[…]
10:57 AM Ticket #2838 (Build Structure executing old (Chimera1) code) closed by pett
fixed
10:40 AM Ticket #2841 (Help Viewer crash?) closed by pett
duplicate
10:34 AM Ticket #2840 (Sequence header session-restore problem) closed by pett
not a bug: Hi Leonie, It looks like this is a session from a newer version of …
12:09 AM Ticket #2841 (Help Viewer crash?) created by chimerax-bug-report@…
[…]

Feb 12, 2020:

10:06 PM Ticket #2840 (Sequence header session-restore problem) created by leonie.anton@…
[…]
6:50 PM Ticket #2839 (update_buffer_data: cannot allocate huge array) created by mfschmid@…
[…]
5:59 PM Ticket #2838 (Build Structure executing old (Chimera1) code) created by goddard@…
[…]
5:47 PM Ticket #2827 (Crash while using Help Viewer) closed by Greg Couch
worksforme: We have update the version of the Qt user interface toolkit in the …
3:29 PM Ticket #2801 (Model Panel width too narrow) closed by pett
fixed
2:35 PM Ticket #2834 (Settings save failure when saving non-default color) closed by pett
fixed: Happened because repr() of a Color was not eval()able (numpy string …
11:27 AM Ticket #2836 (Crash either initializing graphics or when screen changed) closed by Tom Goddard
can't reproduce: Crash in Qt. It was deleting a QScreen and in handleScreenRemoved() …
10:08 AM Ticket #2837 (Crash displaying ISOLDE ramachandran plot) created by jaremko@…
[…]
9:59 AM Ticket #2836 (Crash either initializing graphics or when screen changed) created by chimerax-bug-report@…
[…]
9:22 AM Ticket #2835 (View all misbehaves in VR) created by Tom Goddard
When I use the view all toolbar icon in VR my molecule recedes further …
6:09 AM Ticket #2834 (Settings save failure when saving non-default color) created by chimerax-bug-report@…
[…]

Feb 11, 2020:

7:16 PM Ticket #2833 (VR room camera depth cue is wrong) created by Tom Goddard
Showing a volume surface in VR with the VR room camera enabled shows …
5:03 PM Ticket #2832 (Chain trace creation delayed in scripts) created by goddard@…
[…] thr.cxc
11:55 AM Ticket #2829 (Bogus bundle reviews) closed by Conrad Huang
fixed: There is no easy way to delete only some of the ratings, so I deleted …
11:21 AM Ticket #2831 (Residue::find_atom() being looked for in isolde/libmolc.so) closed by pett
duplicate: duplicate of #2825
1:26 AM Ticket #2831 (Residue::find_atom() being looked for in isolde/libmolc.so) created by chimerax-bug-report@…
[…]

Feb 10, 2020:

4:56 PM Ticket #2830 (Allow Toolshed uploads with dependencies on daily build bundles) created by goddard@…
[…]
4:29 PM Ticket #2829 (Bogus bundle reviews) created by goddard@…
[…]
3:10 PM Ticket #2828 (Rotamer dialog column sorting not numerical) created by Elaine Meng
If I calculate clashes for Arg rotamers at 3gws residue 346 (Leu) and …
11:45 AM Ticket #2826 (Crash drawing Qt widgets) closed by pett
duplicate: Apparent duplicate of #2826
11:03 AM Ticket #2827 (Crash while using Help Viewer) created by sean.moore@…
[…]
11:01 AM Ticket #2826 (Crash drawing Qt widgets) created by sean.moore@…
[…]
10:18 AM Ticket #2824 (Crash in free_keys_object/subtype_dealloc) closed by pett
can't reproduce
9:59 AM Ticket #2825 (Residue::find_atom() being looked for in isolde/libmolc.so) created by chimerax-bug-report@…
[…]
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