Model Panel: 'Close' sometimes closes parent

[tony.schaefer@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.17763
ChimeraX Version: 0.92 (2020-02-17)
Description
Trying to close a child model using the model panel sometimes also closes the parent model. I've attached a session with several models, each with a child model (a bild object). I've also attached a structure with metal coordination pseudobonds. Closing either the child bild or the pseudobond group causes the parent structure to close about 50% of the time. 

I expand the model's branch on the tree, select the child model (so that the child model is the only one highlighted), and press "close". The `close` command seems to only close the specified model and not its parent. 

Log:
> cd "C:\Users\Tony Schaefer/Desktop"

Current working directory is: C:\Users\Tony Schaefer\Desktop  
UCSF ChimeraX version: 0.92 (2020-02-17)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  
Successfully installed 'ChimAARON-0.1-py3-none-any.whl'  
Looking in indexes: https://pypi.org/simple,
https://cxtoolshed.rbvi.ucsf.edu/pypi/  
Processing c:\users\tony
schaefer\appdata\local\ucsf\chimerax\cache\0.92\installers\chimaaron-0.1-py3-none-
any.whl  
Requirement already satisfied, skipping upgrade: scipy in
d:\chimerax\bin\lib\site-packages (from ChimAARON==0.1) (1.4.1)  
Requirement already satisfied, skipping upgrade: numpy in
d:\chimerax\bin\lib\site-packages (from ChimAARON==0.1) (1.17.4+mkl)  
Requirement already satisfied, skipping upgrade: ChimeraX-Core>=0.1 in
d:\chimerax\bin\lib\site-packages (from ChimAARON==0.1) (0.92)  
Installing collected packages: ChimAARON  
Attempting uninstall: ChimAARON  
Found existing installation: ChimAARON 0.1  
Uninstalling ChimAARON-0.1:  
Successfully uninstalled ChimAARON-0.1  
Successfully installed ChimAARON-0.1  
Lock 2431659382344 acquired on C:\Users\Tony
Schaefer\AppData\Local\UCSF\ChimeraX\Cache\0.92\toolshed\bundle_info.cache.lock  
Lock 2431659382344 released on C:\Users\Tony
Schaefer\AppData\Local\UCSF\ChimeraX\Cache\0.92\toolshed\bundle_info.cache.lock  
  

WARNING: You are using pip version 20.0.1; however, version 20.0.2 is
available.  
You should consider upgrading via the 'D:\ChimeraX\bin\ChimeraX.exe -m pip
install --upgrade pip' command.  
  

> toolshed show "Browse AaronTools Libraries"

> tile

> preset chimaaron ball-stick-endcap

Preset implemented in Python; no expansion to individual ChimeraX commands
available.  

> close #1

> close #2.1

> close #3

> close #4.1

> close #5

> close #6.1

> close #7

> close

> tile

> preset chimaaron ball-stick-endcap

Preset implemented in Python; no expansion to individual ChimeraX commands
available.  

Empty filename passed to function  

> save session "C:/Users/Tony Schaefer/Desktop/closing_children.cxs"

> open "C:/Users/Tony Schaefer/Desktop/closing_children.cxs"

opened ChimeraX session  

> close #1.1

> close #2.1

> close #3.1

> close #4.1

> close #5

> close #6

> close #7

> close

> open "C:\Users\Tony Schaefer\Desktop\closing_children.cxs"

opened ChimeraX session  

> close #1

> close #2.1

> close #3.1

> close #4.1

> close #5

> close #6.1

> close #7

> close

> open "C:\Users\Tony Schaefer\Desktop\closing_children.cxs"

opened ChimeraX session  

> close #1-7

> open "C:\Users\Tony Schaefer\Desktop\Ac-Sub04.ts2.2.log" coordsets true

Opened C:\Users\Tony Schaefer\Desktop\Ac-Sub04.ts2.2.log as a log trajectory  

> close

> open "C:\Users\Tony Schaefer\Desktop\test.pdb"

Summary of feedback from opening C:\Users\Tony Schaefer\Desktop\test.pdb  
---  
warning | Ignored bad PDB record found on line 31183  
END  
  

> close

> open "C:\Users\Tony Schaefer\Desktop\Ac-Sub18.ts2.Cf1.4.log"

Opened C:\Users\Tony Schaefer\Desktop\Ac-Sub18.ts2.Cf1.4.log as a log file  

> close #1

> open "C:/Users/Tony Schaefer/Desktop/test 2.pdb"

Summary of feedback from opening C:/Users/Tony Schaefer/Desktop/test 2.pdb  
---  
warnings | Ignored bad PDB record found on line 71  
END  
  
Cannot find consistent set of bond orders for ring system containing atom C21
in residue UNK /a:1  
  

> close

> open "C:\Users\Tony Schaefer\Desktop\test 2.pdb"

Summary of feedback from opening C:\Users\Tony Schaefer\Desktop\test 2.pdb  
---  
warnings | Ignored bad PDB record found on line 71  
END  
  
Cannot find consistent set of bond orders for ring system containing atom C22
in residue UNK /a:1  
  

> close

> open "C:\Users\Tony Schaefer\Desktop\test 2.pdb"

Summary of feedback from opening C:\Users\Tony Schaefer\Desktop\test 2.pdb  
---  
warnings | Ignored bad PDB record found on line 71  
END  
  
Cannot find consistent set of bond orders for ring system containing atom C18
in residue UNK /a:1  
  

> close #1.1

> close

> open "C:\Users\Tony Schaefer\Desktop\closing_children.cxs"

opened ChimeraX session  

> close #1.1

> close #2.1

> close #3.1

> close #4

> close #5

> close #6.1

> close #7

> close

> open "C:\Users\Tony Schaefer\Desktop\closing_children.cxs"

opened ChimeraX session  

> close #1.1

> close #2.1

> close #3.1

> close #4.1

> close #5.1

> close #6.1

> close #7.1




OpenGL version: 3.3.0 NVIDIA 441.87
OpenGL renderer: GeForce RTX 2070/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
File attachment: closing_children.zip

closing_children.zip​

[tony.schaefer@…]

Added by email2trac

[pett]

Hi Tony,

Thanks for pointing out this problem. Fixed in tomorrow's build. It was sporadic because it depended on the ordering of the models passed into the routine that tries to generate a short atom specifier for the models, and those models weren't kept in any particular order.

--Eric

Eric Pettersen
UCSF Computer Graphics Lab