Opened 6 years ago

Closed 6 years ago

#2904 closed defect (worksforme)

apt-get install failed for ubuntu 19.10

Reported by: huatiger3@… Owned by: Greg Couch
Priority: normal Milestone:
Component: Platform Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

Hello,
First of all thank you for your good work and assistance.
I was not able to install ucsf-chimerax_0.91_amd64.deb.
Please see below.
Thank you so much.
John
-------------------------------------------------------------------
huatiger@huatiger:Downloads$
sudo apt-get install ~/Downloads/ucsf-chimerax_0.91_amd64.deb
Reading package lists... Error!
E: Problem parsing dependency 21 of ucsf-chimerax:amd64=0.91
E: Error occurred while processing ucsf-chimerax (NewVersion2)
E: Problem with MergeList
/home/huatiger/Downloads/ucsf-chimerax_0.91_amd64.deb
E: The package lists or status file could not be parsed or opened.
huatiger@huatiger:
----------------------------------------------------------------------------------------
huatiger@huatiger:Downloads$ cat /etc/os-release
NAME="Ubuntu"
VERSION="19.10 (Eoan Ermine)"
ID=ubuntu
ID_LIKE=debian
PRETTY_NAME="Ubuntu 19.10"
VERSION_ID="19.10"
HOME_URL="https://www.ubuntu.com/"
SUPPORT_URL="https://help.ubuntu.com/"
BUG_REPORT_URL="https://bugs.launchpad.net/ubuntu/"
PRIVACY_POLICY_URL="
https://www.ubuntu.com/legal/terms-and-policies/privacy-policy"
VERSION_CODENAME=eoan
UBUNTU_CODENAME=eoan
huatiger@huatiger:Downloads$ uname -a
Linux huatiger 5.3.0-40-generic #32-Ubuntu SMP Fri Jan 31 20:24:34 UTC 2020
x86_64 x86_64 x86_64 GNU/Linux
huatiger@huatiger:Downloads$

Attachments (1)

20200303-chimerax-install-error.log (1021 bytes ) - added by huatiger3@… 6 years ago.
Added by email2trac

Download all attachments as: .zip

Change History (8)

comment:1 by pett, 6 years ago

Component: UnassignedPlatform
Owner: set to Greg Couch
Platform: all
Project: ChimeraX
Status: newassigned

comment:2 by Greg Couch, 6 years ago

Which deb package did you try, the Ubuntu 16.04 version or the 18.04 version?

in reply to:  3 ; comment:3 by huatiger3@…, 6 years ago

Greg, Thank you
From http://www.cgl.ucsf.edu/chimerax/download.html
Ubuntu 16.04 and 18.04 seem to show the same deb package.
John

On Mon, Mar 2, 2020 at 2:10 PM ChimeraX <ChimeraX-bugs-admin@cgl.ucsf.edu>
wrote:

comment:4 by Greg Couch, 6 years ago

They are different. But you're right they should have different names. I'll work on that. I'm still curious which one did you try?

in reply to:  5 ; comment:5 by huatiger3@…, 6 years ago

Greg,
I used the 18.04. Please see attached.
Thank you
John

On Mon, Mar 2, 2020 at 7:32 PM ChimeraX <ChimeraX-bugs-admin@cgl.ucsf.edu>
wrote:

20200303-chimerax-install-error.log

by huatiger3@…, 6 years ago

Added by email2trac

comment:6 by Greg Couch, 6 years ago

So I'm not able to reproduce this error using a Ubuntu 19.04 virtual machine, but even if I could, it wouldn't work due to an explicit dependency on llvm6 and only llvm8 is available as far as I can tell for Ubuntu 19.04. So my recommendation is to use the Generic Linux daily build.

I'm going to take this opportunity to review if that dependencies are actually needed, and will get back to you about that.

Also, could you send me the output from "dpkg-deb -I ucsf-chimerax_0.91_amd64.deb"? And to double check, you are running on a 64-bit system, right?

Last edited 6 years ago by Greg Couch (previous) (diff)

comment:7 by Greg Couch, 6 years ago

Resolution: worksforme
Status: assignedclosed

The package dependencies are reasonable.

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