Opened 6 years ago

Closed 6 years ago

Last modified 6 years ago

#2910 closed defect (duplicate)

ChimeraX bug report submission

Reported by: goddard@… Owned by:
Priority: normal Milestone:
Component: VR Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Windows-10-10.0.17763
ChimeraX Version: 0.92 (2020-03-02)
Description
Clicked vr menu button after I had turned vr off and then on.

Log:
UCSF ChimeraX version: 0.92 (2020-03-02)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open C:/Users/goddard/Desktop/vrdemos/byers-mar2020/data/streptogramin5.cxs

opened ChimeraX session  

> vr true

started SteamVR rendering  

> meeting start

Meeting at vive or 192.168.0.198 port 52194  
Connection accepted from 192.168.0.199 port 51002  

> realsense true

RealSense camera model #6  

> windowsize 960 540

> vr roomCamera true fieldOfView 69.4 tracker true

color image type uint8 (540, 960, 3)  
depth image type uint16 (540, 960) mean 3911.040707947531 min 0 max 65535  
color intrinsics width: 960, height: 540, ppx: 478.483, ppy: 269.869, fx:
691.582, fy: 691.708, model: 2, coeffs: [0, 0, 0, 0, 0]  
color fov [69.52588653564453, 42.64518737792969]  
depth intrinsics width: 960, height: 540, ppx: 478.483, ppy: 269.869, fx:
691.582, fy: 691.708, model: 2, coeffs: [0, 0, 0, 0, 0]  
depth fov [69.52588653564453, 42.64518737792969]  
extrinsics color to depth rotation: [1, 0, 0, 0, 1, 0, 0, 0, 1]  
translation: [-0, -0, -0]  

> hide #!2 models

> show #4 models

> show #!1 models

> show #4#!1 cartoons

> hide #4 models

> show #!1 surfaces

VR mode select  

> select #1/A:316@C35

1 atom, 1 model selected  

> select up

38 atoms, 40 bonds, 1 model selected  

> style sel stick

Changed 38 atom styles  

> show #!3 models

> hide #!1 models

> select #3/BA:3001@N5

1 atom, 1 model selected  

> select up

38 atoms, 40 bonds, 1 model selected  

> style sel sphere

Changed 38 atom styles  

> style sel stick

Changed 38 atom styles  

> realsense false

> realsense true

RealSense camera model #6  

> windowsize 960 540

color image type uint8 (540, 960, 3)  
depth image type uint16 (540, 960) mean 4200.399907407407 min 0 max 65535  
color intrinsics width: 960, height: 540, ppx: 478.483, ppy: 269.869, fx:
691.582, fy: 691.708, model: 2, coeffs: [0, 0, 0, 0, 0]  
color fov [69.52588653564453, 42.64518737792969]  
depth intrinsics width: 960, height: 540, ppx: 478.483, ppy: 269.869, fx:
691.582, fy: 691.708, model: 2, coeffs: [0, 0, 0, 0, 0]  
depth fov [69.52588653564453, 42.64518737792969]  
extrinsics color to depth rotation: [1, 0, 0, 0, 1, 0, 0, 0, 1]  
translation: [-0, -0, -0]  

> show #!2 models

> realsense false

Expected true or false or a keyword  

Expected true or false or a keyword  

> realsense true

RealSense camera model #6  

> windowsize 960 540

color image type uint8 (540, 960, 3)  
depth image type uint16 (540, 960) mean 4183.053138503086 min 0 max 65535  
color intrinsics width: 960, height: 540, ppx: 478.483, ppy: 269.869, fx:
691.582, fy: 691.708, model: 2, coeffs: [0, 0, 0, 0, 0]  
color fov [69.52588653564453, 42.64518737792969]  
depth intrinsics width: 960, height: 540, ppx: 478.483, ppy: 269.869, fx:
691.582, fy: 691.708, model: 2, coeffs: [0, 0, 0, 0, 0]  
depth fov [69.52588653564453, 42.64518737792969]  
extrinsics color to depth rotation: [1, 0, 0, 0, 1, 0, 0, 0, 1]  
translation: [-0, -0, -0]  

> realsense false

> vr false

> vr true

started SteamVR rendering  

> realsense true

RealSense camera model #6  

> windowsize 960 540

> vr roomCamera true fieldOfView 69.4 tracker true

color image type uint8 (540, 960, 3)  
depth image type uint16 (540, 960) mean 3900.5923013117285 min 0 max 65535  
color intrinsics width: 960, height: 540, ppx: 478.483, ppy: 269.869, fx:
691.582, fy: 691.708, model: 2, coeffs: [0, 0, 0, 0, 0]  
color fov [69.52588653564453, 42.64518737792969]  
depth intrinsics width: 960, height: 540, ppx: 478.483, ppy: 269.869, fx:
691.582, fy: 691.708, model: 2, coeffs: [0, 0, 0, 0, 0]  
depth fov [69.52588653564453, 42.64518737792969]  
extrinsics color to depth rotation: [1, 0, 0, 0, 1, 0, 0, 0, 1]  
translation: [-0, -0, -0]  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\site-
packages\chimerax\vive\vr.py", line 692, in next_frame  
self.process_controller_events()  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\site-
packages\chimerax\vive\vr.py", line 720, in process_controller_events  
self.process_controller_buttons()  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\site-
packages\chimerax\vive\vr.py", line 747, in process_controller_buttons  
hc.process_event(e)  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\site-
packages\chimerax\vive\vr.py", line 2530, in process_event  
self._dispatch_event(m, event)  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\site-
packages\chimerax\vive\vr.py", line 2534, in _dispatch_event  
mode.pressed(hand_event)  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\site-
packages\chimerax\vive\vr.py", line 3164, in pressed  
ui.display_ui(hand_event.hand_controller.room_position, c.room_position)  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\site-
packages\chimerax\vive\vr.py", line 1769, in display_ui  
self.show(p, parent)  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\site-
packages\chimerax\vive\vr.py", line 1362, in show  
self._panels = self._create_panels()  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\site-
packages\chimerax\vive\vr.py", line 1402, in _create_panels  
self._check_for_new_panels()  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\site-
packages\chimerax\vive\vr.py", line 1472, in _check_for_new_panels  
self._add_panels(newp)  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\site-
packages\chimerax\vive\vr.py", line 1447, in _add_panels  
z = max([p.center[2]+p.thickness for p in self._panels],  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\site-
packages\chimerax\vive\vr.py", line 1447, in <listcomp>  
z = max([p.center[2]+p.thickness for p in self._panels],  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\site-
packages\chimerax\vive\vr.py", line 1830, in _get_center  
return pd.position.origin() if pd else None  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\site-
packages\chimerax\core\graphics\drawing.py", line 445, in
_drawing_get_position  
return self._positions[0]  
TypeError: 'NoneType' object is not subscriptable  
  
Error processing trigger "new frame":  
TypeError: 'NoneType' object is not subscriptable  
  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\site-
packages\chimerax\core\graphics\drawing.py", line 445, in
_drawing_get_position  
return self._positions[0]  
  
See log for complete Python traceback.  
  

Failed to send bug report. Error while sending follows:  

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\site-
packages\chimerax\bug_reporter\bug_reporter_gui.py", line 231, in submit  
errcode, errmsg, headers, body = post_multipart_formdata(BUG_HOST,
BUG_SELECTOR, fields)  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\site-
packages\chimerax\webservices\post_form.py", line 40, in
post_multipart_formdata  
h.request('POST', url, body=body, headers=headers)  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\http\client.py", line 1252,
in request  
self._send_request(method, url, body, headers, encode_chunked)  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\http\client.py", line 1298,
in _send_request  
self.endheaders(body, encode_chunked=encode_chunked)  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\http\client.py", line 1247,
in endheaders  
self._send_output(message_body, encode_chunked=encode_chunked)  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\http\client.py", line 1026,
in _send_output  
self.send(msg)  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\http\client.py", line 966,
in send  
self.connect()  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\http\client.py", line 938,
in connect  
(self.host,self.port), self.timeout, self.source_address)  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\socket.py", line 707, in
create_connection  
for res in getaddrinfo(host, port, 0, SOCK_STREAM):  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\socket.py", line 752, in
getaddrinfo  
for res in _socket.getaddrinfo(host, port, family, type, proto, flags):  
socket.gaierror: [Errno 11001] getaddrinfo failed  

Failed to send bug report. Error while sending follows:  

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\site-
packages\chimerax\bug_reporter\bug_reporter_gui.py", line 231, in submit  
errcode, errmsg, headers, body = post_multipart_formdata(BUG_HOST,
BUG_SELECTOR, fields)  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\site-
packages\chimerax\webservices\post_form.py", line 40, in
post_multipart_formdata  
h.request('POST', url, body=body, headers=headers)  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\http\client.py", line 1252,
in request  
self._send_request(method, url, body, headers, encode_chunked)  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\http\client.py", line 1298,
in _send_request  
self.endheaders(body, encode_chunked=encode_chunked)  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\http\client.py", line 1247,
in endheaders  
self._send_output(message_body, encode_chunked=encode_chunked)  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\http\client.py", line 1026,
in _send_output  
self.send(msg)  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\http\client.py", line 966,
in send  
self.connect()  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\http\client.py", line 938,
in connect  
(self.host,self.port), self.timeout, self.source_address)  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\socket.py", line 728, in
create_connection  
raise err  
File "C:\Program Files\ChimeraX-Mar-2-2020\bin\lib\socket.py", line 716, in
create_connection  
sock.connect(sa)  
ConnectionAbortedError: [WinError 10053] An established connection was aborted
by the software in your host machine  




OpenGL version: 3.3.0 NVIDIA 430.39
OpenGL renderer: Quadro P6000/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Change History (2)

comment:1 by Tom Goddard, 6 years ago

Platform: → all
Project: → ChimeraX
Resolution: → duplicate
Status: new → closed

Duplicate of #2909

comment:2 by Eric Pettersen, 6 years ago

Component: Unassigned → VR
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