![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Oct 4, 2018:
- 7:58 PM Ticket #1352 (crossfade: FileNotFoundError) created by
- […]
- 6:38 PM Ticket #1351 (Residue :0 atom spec does not work.) created by
- The atom-spec :0 does not specify any atoms even when residue :0 …
- 2:19 PM Ticket #1349 (error reading pseudobond file) closed by
- fixed
- 2:11 PM Ticket #1348 (mlp command broken) closed by
- fixed: Updating an import was missing when the surface bundle got moved out …
- 1:02 PM Ticket #1350 (Button to hide/show all maps, and button to hide/show all atomic structures) created by
- From: Oliver Clarke Subject: [Chimera-users] Maps/models …
- 12:41 PM Ticket #1349 (error reading pseudobond file) created by
- […] 5ego.pb
- 12:35 PM Ticket #1348 (mlp command broken) created by
- […]
- 11:27 AM ChangeLog edited by
- (diff)
- 11:23 AM ChangeLog edited by
- (diff)
- 11:22 AM ChangeLog edited by
- (diff)
- 10:19 AM Ticket #1347 (Crash in chem_group::find_5ring_OR2) closed by
- can't reproduce: Not the first report of this and it's just not enough info to diagnose …
- 7:56 AM Ticket #1347 (Crash in chem_group::find_5ring_OR2) created by
- […]
- 6:17 AM Ticket #1346 (Same model used multiple times in model hierarchy) created by
- If I do: […] ... then the loop runs crazily slow (after ~15 …
Oct 3, 2018:
- 5:38 PM ChangeLog edited by
- (diff)
- 5:13 PM Ticket #1345 ("Report a bug" should not be an option for errors that derive from NotABug) created by
- As summary. Pretty much the point of those error types (UserError, …
- 3:34 PM ChangeLog edited by
- (diff)
- 3:25 PM ChangeLog edited by
- (diff)
- 2:03 PM Ticket #1344 (Sequence Viewer annoying horizontal scroll behavior) created by
- I find it mpossible to get rid of horizontal scrollbar. My Mac …
- 12:47 PM Ticket #1343 (vr: VRInitError_Init_VRClientDLLNotFound) closed by
- nonchimerax: I never tried VR on Linux. It turns out the Python openvr library …
- 12:04 PM Ticket #1343 (vr: VRInitError_Init_VRClientDLLNotFound) created by
- […]
- 10:54 AM Ticket #1340 (PDBio: bad format char in arg-parsing string) closed by
- fixed: Hi, Thanks for reporting this problem. It is fixed now and the fix …
- 9:33 AM Ticket #1342 (Atoms.aniso_u(6) hides data) created by
- Would be really good to have these carry through to the output PDB …
- 4:04 AM Ticket #1341 (Friendlier alignment API) created by
- I found my way to what I needed by digging through the source of …
Oct 2, 2018:
- 7:57 PM Ticket #1340 (PDBio: bad format char in arg-parsing string) created by
- […]
- 4:56 PM Ticket #1339 (Status messages fetching file do not appear on Windows 10) created by
- When fetching a large file "open 4v6s from eds" (130 Mbytes) which …
Oct 1, 2018:
- 1:54 PM ChangeLog edited by
- (diff)
- 11:34 AM Ticket #1334 (Atom.aniso_u6 values in wrong order) closed by
- fixed: Not sure why the PDB uses the order it does, but nonetheless changed …
- 10:50 AM Ticket #1338 (draw() takes 3 positional arguments but 4 were given) closed by
- duplicate: Duplicate. Fixed last week.
- 4:01 AM Ticket #1338 (draw() takes 3 positional arguments but 4 were given) created by
- […]
Sep 28, 2018:
- 10:10 PM Ticket #1337 (Port volume mask command) created by
- Port mask command from Chimera to ChimeraX.
- 5:18 PM ChangeLog edited by
- (diff)
- 3:20 PM Ticket #1336 (Add mouse mode to move 2d labels) closed by
- fixed: Done.
- 3:19 PM Ticket #1336 (Add mouse mode to move 2d labels) created by
- Click and drag on a 2d label to move it.
- 11:08 AM Ticket #1335 (Python testing scripts: 'session' not available) created by
- In Python testing scripts (e.g. hbonds/disabled-test.py), 'session' is …
- 6:24 AM Ticket #1334 (Atom.aniso_u6 values in wrong order) created by
- According to the docstring they should be in the same order as in the …
Sep 26, 2018:
- 4:28 PM Ticket #1329 (draw() takes 3 positional arguments but 4 were given) closed by
- fixed: Fixed. Changes to drawing routines last week broke this, happens …
- 4:03 PM Ticket #1332 (Inadequate OpenGL) closed by
- not a bug: Inadequate OpenGL version -- error message explains it clearly.
- 3:58 PM Ticket #1330 (wait command: draw_new_frame() takes 1 positional argument but 2 were given) closed by
- fixed: This was fixed back in July.
- 1:56 PM Ticket #1331 (Attempted override of builtin color produces traceback) closed by
- fixed: Changed it to raise "UserError" which produces a status line message …
- 1:01 PM Ticket #1332 (Inadequate OpenGL) created by
- […]
- 11:10 AM Ticket #1331 (Attempted override of builtin color produces traceback) created by
- […]
- 8:55 AM Ticket #1330 (wait command: draw_new_frame() takes 1 positional argument but 2 were given) created by
- […]
- 6:10 AM Ticket #1329 (draw() takes 3 positional arguments but 4 were given) created by
- […]
Sep 25, 2018:
- 2:54 PM Ticket #1328 (User-supplied template CYX does not match the residue 60 (CYS)) created by
- […]
- 12:37 PM Ticket #1327 (Tethers not hidden correctly) created by
- […]
- 11:52 AM Ticket #1326 (Dragging DockWidget → crash) closed by
- can't reproduce: Tried my best to reproduce this without success. Seems to be a …
- 11:48 AM Ticket #1323 (Session restore of color name: tuple indices must be integers or ...) closed by
- fixed: Fixed. Named color session save added by Greg saved the data as a …
- 11:36 AM Ticket #1322 (Read pbonds: 'str' object has no attribute 'decode') closed by
- fixed: Fixed in tonights ChimeraX builds. Some code changed so that the …
- 11:08 AM Ticket #1326 (Dragging DockWidget → crash) created by
- […]
- 10:51 AM Ticket #1325 (RFE: include named targets in sessions) created by
- Include named targets (from "name" command) in session files.
- 10:50 AM Ticket #1324 (RFE: include aliases in session files) created by
- Include aliases (defined with "alias") in session files.
- 10:30 AM Ticket #1323 (Session restore of color name: tuple indices must be integers or ...) created by
- […]
- 9:10 AM Ticket #1322 (Read pbonds: 'str' object has no attribute 'decode') created by
- […]
Sep 24, 2018:
- 2:45 PM Ticket #1321 ("binary" bundles) created by
- As per our ChimeraX meeting discussion, bundles that offer C++ …
- 2:28 PM Ticket #1320 (Can't save ChimeraX session) closed by
- can't reproduce: Hi Michael, It seems that you are using an older version of ChimeraX. …
- 1:50 PM Ticket #1320 (Can't save ChimeraX session) created by
- […]
- 11:59 AM 2018-09-24 created by
- 11:53 AM Ticket #1319 ("lighting full" broken) closed by
- fixed: Fixed. I broke shadows last week by changes to the graphics code that …
- 11:50 AM 2018-09-20 edited by
- (diff)
- 11:50 AM DeveloperMeetings edited by
- (diff)
- 11:18 AM Ticket #1319 ("lighting full" broken) created by
- per summary; individual shadows/ambient modes also broken
- 11:06 AM Ticket #1317 (ChimeraX bug report submission) closed by
- duplicate
- 5:03 AM Ticket #1318 (Apparently bogus help viewer error) created by
- […]
Sep 23, 2018:
Sep 20, 2018:
- 3:00 PM 2018-09-20 created by
- 2:09 PM DeveloperMeetings edited by
- (diff)
- 1:52 PM Ticket #1312 (Session restoring problem) closed by
- not a bug: Not a bug per se, since we are not yet guaranteeing session file …
- 8:16 AM Ticket #1315 (Support volume mesh line widths > 1) created by
- […]
- 6:24 AM Ticket #1314 (OpenGL window unresponsive after sleeping laptop) created by
- Possible this is specific to my laptop (an Asus ROG Strix GL502VS, for …
- 5:21 AM Ticket #1313 (misleading error message) created by
- […]
- 2:54 AM Ticket #1312 (Session restoring problem) created by
- […]
Sep 19, 2018:
- 12:27 PM Ticket #1311 (Windows 10 display scaling gives wrong GUI text sizes) created by
- On high-dpi displays (e.g. 4K displays, or 2560x1440 laptop screens) …
Sep 18, 2018:
- 5:21 PM Ticket #1306 (pseudobond labels not on top) closed by
- fixed: Fixed. This was a bit tricky to fix. Needed to add a new graphics …
- 2:08 PM Ticket #1303 (Addh protonates metal-coordinated cysteines) closed by
- not a bug
- 11:27 AM Ticket #1309 (RFE: per-model "stick" radius for singleton atoms) closed by
- fixed: Fixed. Made the size command stickRadius option set the per-structure …
Sep 17, 2018:
- 3:52 PM Ticket #1310 (Help link in Log wrong URL for "bumps" command) created by
- […]
- 3:14 PM Ticket #1309 (RFE: per-model "stick" radius for singleton atoms) created by
- We didn't specifically discuss how to control this, but seems natural …
- 2:52 PM Ticket #1308 (label shown on black rectangles no matter what (sometimes?)) closed by
- fixed: Fixed. This bug was introduced from the fix a week or two ago of …
- 2:38 PM Ticket #1307 ("label delete bonds" deletes pseudobond labels) closed by
- fixed: Fixed. Label delete code was not distinguishing bonds and pseudobonds.
- 2:22 PM Ticket #1308 (label shown on black rectangles no matter what (sometimes?)) created by
- I say "sometimes" because I don't always see it, but "no matter what" …
- 2:11 PM Ticket #1307 ("label delete bonds" deletes pseudobond labels) created by
- summary says it all... e.g. open 1bzm ~cartoon la #1 pseudobonds lab …
- 1:59 PM Ticket #1306 (pseudobond labels not on top) created by
- When I show pseudobond labels, they are not on top and cannot be made …
- 1:39 PM Ticket #1304 (AnnotationProxy.name = None) closed by
- fixed: Fixed in 6bb56ff5d.
- 1:29 PM 2018-09-17 edited by
- (diff)
- 11:38 AM Ticket #1225 (RFE: synonyms "round" "square" for cartoon style xsection) closed by
- fixed: Fixed in 1d7bb65a3.
- 11:11 AM Ticket #1230 (Better bundle_builder support for Cython) closed by
- fixed: Fixed (mostly). RBVI bundles all build using the new version which …
- 10:54 AM 2018-09-17 created by
- 10:43 AM Ticket #1305 (Need mechanism for restarting ChimeraX after installing in-use bundle) created by
- When a bundle is already in use when a new version is asked to be …
- 10:32 AM DeveloperMeetings edited by
- (diff)
Sep 14, 2018:
- 7:13 PM Ticket #1295 (Problem restoring VolumeSurface in session) closed by
- fixed: Fixed. Replacing maps when restoring a session was broken when map …
- 5:14 PM Ticket #1304 (AnnotationProxy.name = None) created by
- […]
- 12:53 PM Ticket #1291 (bumps command: attempt to get argmax of an empty sequence) closed by
- fixed: Fixed. Bumps made a structure with no atoms since there were no …
- 11:37 AM Ticket #1299 (Can't submit report bug) closed by
- fixed: I see that the Report a Bug dialog does provide a good error message …
- 3:53 AM Ticket #1303 (Addh protonates metal-coordinated cysteines) created by
- Sorry to keep picking on AddH - it's a really useful tool that's …
Sep 13, 2018:
- 6:34 PM Ticket #1302 (Export colors with OBJ files) created by
- Currently Chimera exports a .mtl file with a .obj file that lists …
- 6:14 PM Ticket #1300 (Error calling glClear on status bar: invalid enumerant) closed by
- nonchimerax: We don't support Windows 7. The error says it is a graphics driver …
- 6:12 PM Ticket #1301 (OpenGL error invalid enumerant at startup) closed by
- nonchimerax: The error message explains clear enough this is a graphics driver …
- 3:48 PM Ticket #1301 (OpenGL error invalid enumerant at startup) created by
- […]
- 12:59 AM Ticket #1300 (Error calling glClear on status bar: invalid enumerant) created by
- […]
Sep 12, 2018:
- 10:29 AM Ticket #1299 (Can't submit report bug) created by
- (for obvious reasons, actually originally submitted to chimera-bugs) …
- 9:52 AM Ticket #1298 (No module named 'pip.wheel') created by
- […]
Sep 11, 2018:
- 5:25 PM Ticket #1285 (ChimeraX bug report submission) closed by
- can't reproduce: Hi Han, Thanks for letting me know. My best guess is that it's some …
- 3:03 PM Ticket #1297 (Handle tinyarray in session save/restore) created by
- […]
- 2:28 PM Ticket #1296 (vseries measure: No module named 'chimerax.core.measure') created by
- […]
- 2:13 PM Ticket #1294 (Startup error: add_select_menu_entry() missing 1 required positional ...) closed by
- fixed: Had a spurious extra arg declared in add_select_menu_entry()
- 1:38 PM Ticket #1293 (AddH fails to add hydrogen to specific peptide nitrogen) closed by
- not a bug: Man, I am bad at cross-checking things. Chimera 1 _also_ does not add …
- 12:09 PM Ticket #1295 (Problem restoring VolumeSurface in session) created by
- […]
- 12:06 PM Ticket #1294 (Startup error: add_select_menu_entry() missing 1 required positional ...) created by
- […]
- 5:50 AM Ticket #1293 (AddH fails to add hydrogen to specific peptide nitrogen) created by
- The attached file is snipped out of a much larger structure …
- 1:02 AM Ticket #1292 (Registration code not handling some date formats) created by
- […] 3k3a.pdb1
Sep 10, 2018:
- 3:59 PM Ticket #1291 (bumps command: attempt to get argmax of an empty sequence) created by
- […]
- 3:38 PM Ticket #1290 (Preserve hide dust settings when playing volume series) created by
- Preserve hide dust settings when playing a volume series. Chimera …
- 2:37 PM Ticket #1286 ('AtomsDrawing' object has no attribute 'any_part_selected') closed by
- fixed: Fixed. Move selection mouse mode was broken by changes a week ago …
- 11:31 AM Ticket #1287 ('AtomsDrawing' object has no attribute 'any_part_selected') closed by
- duplicate
- 11:17 AM Ticket #1282 (UnicodeDecodeError reporting mac crash) closed by
- fixed: Fixed. Bug reporter raised an error when Mac crash dump contains …
- 11:16 AM Ticket #1289 (Test of bug reporter with non-ascii character in Mac crash dump) closed by
- fixed: Fix worked.
- 11:14 AM Ticket #1289 (Test of bug reporter with non-ascii character in Mac crash dump) created by
- […]
- 11:00 AM Ticket #1284 (CageBuilder session failure) closed by
- fixed: Fixed in tonight's daily build.
- 8:12 AM Ticket #1288 (Toolshed error) created by
-
Right at the end of
make app-install, I get the below traceback, …
Sep 9, 2018:
Sep 7, 2018:
- 3:52 PM 2018-09-06 edited by
- (diff)
- 3:41 PM Ticket #1277 (addh protonates wrong HIS nitrogen) closed by
- fixed: Thanks for finding this! It was also a problem in the original …
- 2:27 PM 2018-09-06 edited by
- (diff)
- 2:24 PM 2018-09-06 edited by
- (diff)
- 2:24 PM 2018-09-06 edited by
- (diff)
- 12:51 PM Ticket #1286 ('AtomsDrawing' object has no attribute 'any_part_selected') created by
- […]
- 4:42 AM Ticket #1285 (ChimeraX bug report submission) created by
- […]
Sep 6, 2018:
- 6:35 PM Ticket #1284 (CageBuilder session failure) created by
- […]
- 4:29 PM Ticket #1283 (Use alt key to emulate middle mouse with trackpad on Windows laptops) created by
- Currently there is no easy way to emulate middle mouse drag to move …
- 2:28 PM 2018-09-06 created by
- 2:05 PM DeveloperMeetings edited by
- (diff)
- 1:36 PM Ticket #312 (option to save Log and/or Cmd History as HTML with executable links) closed by
- fixed: Added a "carriage return" icon to rerun the command. If a saved log …
- 12:18 PM Ticket #1281 (clashes failing to recognise H-bonds with explicit hydrogens) closed by
- fixed: Thanks for finding this and supplying a fix. I've applied your fix to …
- 11:50 AM ChangeLog edited by
- (diff)
- 11:28 AM Ticket #1282 (UnicodeDecodeError reporting mac crash) created by
- […]
- 8:17 AM Ticket #1281 (clashes failing to recognise H-bonds with explicit hydrogens) created by
-
Easy fix. In
clashes.py, line 176: […] should be: […]
Sep 4, 2018:
- 2:56 PM Ticket #1280 (Could not parse stylesheet) closed by
- fixed: This was fixed a few days ago. Get the latest daily build. The …
- 12:04 PM Ticket #1280 (Could not parse stylesheet) created by
- […]
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