Opened 7 years ago
Closed 7 years ago
#1329 closed defect (fixed)
draw() takes 3 positional arguments but 4 were given
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | 0.8 |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Darwin-17.7.0-x86_64-i386-64bit ChimeraX Version: 0.8 (2018-09-26) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 0.8 (2018-09-26) How to cite UCSF ChimeraX open /Users/ghatz/Desktop/xtal/MB3/20180611/Refine_13/MB3-180611_refine_13.pdb ↵ Summary of feedback from opening /Users/ghatz/Desktop/xtal/MB3/20180611/Refine_13/MB3-180611_refine_13.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK Date 2018-06-22 Time 21:14:44 CEST +0200 (1529694884.76 s) Ignored bad PDB record found on line 2 REMARK PHENIX refinement Ignored bad PDB record found on line 4 REMARK ****************** INPUT FILES AND LABELS ****************************** Ignored bad PDB record found on line 5 REMARK Reflections: Ignored bad PDB record found on line 6 REMARK file name : /Users/ghatz/Desktop/xtal/MB3/20180611/puck62-5_1_ccp4_5C121.mtz 48 messages similar to the above omitted Chain information for MB3-180611_refine_13.pdb #1 --- Chain | Description A | No description available B | No description available C | No description available D E | No description available F | No description available show selAtoms ribbons ↵ show selAtoms ribbons ↵ show selAtoms surfaces ↵ set bgColor white ↵ hide #!1.6 models ↵ hide #!1.5 models ↵ hide selAtoms ribbons ↵ hide selAtoms surfaces ↵ show selAtoms surfaces ↵ hide #!1.5 models ↵ hide #!1.6 models ↵ select #1.5 ↵ 681 atoms selected ~select #1.5 ↵ select subtract #1.5 ↵ Nothing selected hide #1.6 target m ↵ hide #1.5 target m ↵ show #!1.5 models ↵ close #1.6 ↵ close #1.3 ↵ color selAtoms byhetero ↵ color selAtoms byhetero ↵ color selAtoms bychain ↵ hbonds selAtoms ↵ 637 hydrogen bonds found hbonds selAtoms ↵ 637 hydrogen bonds found ui mousemode rightMode clip ↵ ui mousemode rightMode clip ↵ close session ↵ open /Users/ghatz/Desktop/xtal/MB3/20180611/Refine_13/MB3-180611_refine_13.pdb ↵ Summary of feedback from opening /Users/ghatz/Desktop/xtal/MB3/20180611/Refine_13/MB3-180611_refine_13.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK Date 2018-06-22 Time 21:14:44 CEST +0200 (1529694884.76 s) Ignored bad PDB record found on line 2 REMARK PHENIX refinement Ignored bad PDB record found on line 4 REMARK ****************** INPUT FILES AND LABELS ****************************** Ignored bad PDB record found on line 5 REMARK Reflections: Ignored bad PDB record found on line 6 REMARK file name : /Users/ghatz/Desktop/xtal/MB3/20180611/puck62-5_1_ccp4_5C121.mtz 48 messages similar to the above omitted Chain information for MB3-180611_refine_13.pdb #1 --- Chain | Description A | No description available B | No description available C | No description available D E | No description available F | No description available select #1 ↵ 6978 atoms, 7122 bonds selected sequence chain #1/E Alignment identifier is 1.E hide target m ↵ show target m ↵ Traceback (most recent call last): File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 386, in <lambda> gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag") File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 326, in _dispatch_mouse_event f(MouseEvent(event)) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 454, in mouse_drag self._draw_drag_rectangle(event) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 532, in _draw_drag_rectangle v.draw_xor_rectangle(dx, h-dy, x, h-y, self.drag_color) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/graphics/view.py", line 279, in draw_xor_rectangle self._rectangle_drawing = draw_xor_rectangle(self._render, x1, y1, x2, y2, color, d) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/graphics/drawing.py", line 1451, in draw_xor_rectangle d.draw(r, p0, d.OPAQUE_DRAW_PASS) TypeError: draw() takes 3 positional arguments but 4 were given TypeError: draw() takes 3 positional arguments but 4 were given File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/graphics/drawing.py", line 1451, in draw_xor_rectangle d.draw(r, p0, d.OPAQUE_DRAW_PASS) See log for complete Python traceback. Traceback (most recent call last): File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 386, in <lambda> gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag") File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 326, in _dispatch_mouse_event f(MouseEvent(event)) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 454, in mouse_drag self._draw_drag_rectangle(event) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 532, in _draw_drag_rectangle v.draw_xor_rectangle(dx, h-dy, x, h-y, self.drag_color) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/graphics/view.py", line 279, in draw_xor_rectangle self._rectangle_drawing = draw_xor_rectangle(self._render, x1, y1, x2, y2, color, d) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/graphics/drawing.py", line 1451, in draw_xor_rectangle d.draw(r, p0, d.OPAQUE_DRAW_PASS) TypeError: draw() takes 3 positional arguments but 4 were given TypeError: draw() takes 3 positional arguments but 4 were given File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/graphics/drawing.py", line 1451, in draw_xor_rectangle d.draw(r, p0, d.OPAQUE_DRAW_PASS) See log for complete Python traceback. Traceback (most recent call last): File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 386, in <lambda> gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag") File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 326, in _dispatch_mouse_event f(MouseEvent(event)) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 454, in mouse_drag self._draw_drag_rectangle(event) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 532, in _draw_drag_rectangle v.draw_xor_rectangle(dx, h-dy, x, h-y, self.drag_color) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/graphics/view.py", line 279, in draw_xor_rectangle self._rectangle_drawing = draw_xor_rectangle(self._render, x1, y1, x2, y2, color, d) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/graphics/drawing.py", line 1451, in draw_xor_rectangle d.draw(r, p0, d.OPAQUE_DRAW_PASS) TypeError: draw() takes 3 positional arguments but 4 were given TypeError: draw() takes 3 positional arguments but 4 were given File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/graphics/drawing.py", line 1451, in draw_xor_rectangle d.draw(r, p0, d.OPAQUE_DRAW_PASS) See log for complete Python traceback. Traceback (most recent call last): File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 386, in <lambda> gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag") File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 326, in _dispatch_mouse_event f(MouseEvent(event)) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 454, in mouse_drag self._draw_drag_rectangle(event) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 532, in _draw_drag_rectangle v.draw_xor_rectangle(dx, h-dy, x, h-y, self.drag_color) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/graphics/view.py", line 279, in draw_xor_rectangle self._rectangle_drawing = draw_xor_rectangle(self._render, x1, y1, x2, y2, color, d) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/graphics/drawing.py", line 1451, in draw_xor_rectangle d.draw(r, p0, d.OPAQUE_DRAW_PASS) TypeError: draw() takes 3 positional arguments but 4 were given TypeError: draw() takes 3 positional arguments but 4 were given File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/graphics/drawing.py", line 1451, in draw_xor_rectangle d.draw(r, p0, d.OPAQUE_DRAW_PASS) See log for complete Python traceback. Traceback (most recent call last): File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 386, in <lambda> gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag") File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 326, in _dispatch_mouse_event f(MouseEvent(event)) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 454, in mouse_drag self._draw_drag_rectangle(event) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 532, in _draw_drag_rectangle v.draw_xor_rectangle(dx, h-dy, x, h-y, self.drag_color) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/graphics/view.py", line 279, in draw_xor_rectangle self._rectangle_drawing = draw_xor_rectangle(self._render, x1, y1, x2, y2, color, d) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/graphics/drawing.py", line 1451, in draw_xor_rectangle d.draw(r, p0, d.OPAQUE_DRAW_PASS) TypeError: draw() takes 3 positional arguments but 4 were given TypeError: draw() takes 3 positional arguments but 4 were given File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/graphics/drawing.py", line 1451, in draw_xor_rectangle d.draw(r, p0, d.OPAQUE_DRAW_PASS) See log for complete Python traceback. Traceback (most recent call last): File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 386, in <lambda> gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag") File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 326, in _dispatch_mouse_event f(MouseEvent(event)) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 454, in mouse_drag self._draw_drag_rectangle(event) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 532, in _draw_drag_rectangle v.draw_xor_rectangle(dx, h-dy, x, h-y, self.drag_color) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/graphics/view.py", line 279, in draw_xor_rectangle self._rectangle_drawing = draw_xor_rectangle(self._render, x1, y1, x2, y2, color, d) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/graphics/drawing.py", line 1451, in draw_xor_rectangle d.draw(r, p0, d.OPAQUE_DRAW_PASS) TypeError: draw() takes 3 positional arguments but 4 were given TypeError: draw() takes 3 positional arguments but 4 were given File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/graphics/drawing.py", line 1451, in draw_xor_rectangle d.draw(r, p0, d.OPAQUE_DRAW_PASS) See log for complete Python traceback. Traceback (most recent call last): File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 386, in <lambda> gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag") File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 326, in _dispatch_mouse_event f(MouseEvent(event)) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 454, in mouse_drag self._draw_drag_rectangle(event) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 532, in _draw_drag_rectangle v.draw_xor_rectangle(dx, h-dy, x, h-y, self.drag_color) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/graphics/view.py", line 279, in draw_xor_rectangle self._rectangle_drawing = draw_xor_rectangle(self._render, x1, y1, x2, y2, color, d) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/graphics/drawing.py", line 1451, in draw_xor_rectangle d.draw(r, p0, d.OPAQUE_DRAW_PASS) TypeError: draw() takes 3 positional arguments but 4 were given TypeError: draw() takes 3 positional arguments but 4 were given File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/graphics/drawing.py", line 1451, in draw_xor_rectangle d.draw(r, p0, d.OPAQUE_DRAW_PASS) See log for complete Python traceback. Traceback (most recent call last): File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 386, in <lambda> gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag") File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 326, in _dispatch_mouse_event f(MouseEvent(event)) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 454, in mouse_drag self._draw_drag_rectangle(event) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 532, in _draw_drag_rectangle v.draw_xor_rectangle(dx, h-dy, x, h-y, self.drag_color) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/graphics/view.py", line 279, in draw_xor_rectangle self._rectangle_drawing = draw_xor_rectangle(self._render, x1, y1, x2, y2, color, d) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/graphics/drawing.py", line 1451, in draw_xor_rectangle d.draw(r, p0, d.OPAQUE_DRAW_PASS) TypeError: draw() takes 3 positional arguments but 4 were given TypeError: draw() takes 3 positional arguments but 4 were given File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/graphics/drawing.py", line 1451, in draw_xor_rectangle d.draw(r, p0, d.OPAQUE_DRAW_PASS) See log for complete Python traceback. Traceback (most recent call last): File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 386, in <lambda> gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag") File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 326, in _dispatch_mouse_event f(MouseEvent(event)) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 454, in mouse_drag self._draw_drag_rectangle(event) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/ui/mousemodes.py", line 532, in _draw_drag_rectangle v.draw_xor_rectangle(dx, h-dy, x, h-y, self.drag_color) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/graphics/view.py", line 279, in draw_xor_rectangle self._rectangle_drawing = draw_xor_rectangle(self._render, x1, y1, x2, y2, color, d) File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/graphics/drawing.py", line 1451, in draw_xor_rectangle d.draw(r, p0, d.OPAQUE_DRAW_PASS) TypeError: draw() takes 3 positional arguments but 4 were given TypeError: draw() takes 3 positional arguments but 4 were given File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/graphics/drawing.py", line 1451, in draw_xor_rectangle d.draw(r, p0, d.OPAQUE_DRAW_PASS) See log for complete Python traceback. OpenGL version: 4.1 NVIDIA-10.33.0 387.10.10.10.40.105 OpenGL renderer: NVIDIA GeForce GT 750M OpenGL Engine OpenGL vendor: NVIDIA Corporation
Change History (2)
comment:1 by , 7 years ago
| Component: | Unassigned → Graphics |
|---|---|
| Milestone: | → 0.8 |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → draw() takes 3 positional arguments but 4 were given |
comment:2 by , 7 years ago
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
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Fixed.
Changes to drawing routines last week broke this, happens during drag select.