Opened 7 years ago

Closed 7 years ago

#1327 closed defect (fixed)

Tethers not hidden correctly

Reported by: goddard@… Owned by: Conrad Huang
Priority: critical Milestone: 0.9
Component: Depiction Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Darwin-17.7.0-x86_64-i386-64bit
ChimeraX Version: 0.8 (2018-09-25)
Description
Tethers are still show after ribbon is hidden.  They look like thorns coming out of the atoms.

open 2gbp
hide ligand :<5 ribbons

Note thorns on a several C and N atoms.

Going to show VR of a binding site like this on Friday to a large group (dozen people) from Peter Walter lab and Genentech.  Would be nice if fixed by them.

Log:
UCSF ChimeraX version: 0.8 (2018-09-25)  
How to cite UCSF ChimeraX  

open 2gbp format mmCIF fromDatabase pdb ↵

2gbp title:  
Sugar and signal-transducer binding sites of the escherichia coli galactose
chemoreceptor protein [more info...]  
  
Chain information for 2gbp #1  
---  
Chain | Description  
A | D-galactose/D-glucose binding protein  
  
  

hide ligand :< 5 ribbons ↵

toolshed show "Bug Reporter"




OpenGL version: 4.1 NVIDIA-10.32.0 355.11.10.10.40.102
OpenGL renderer: NVIDIA GeForce GTX 680MX OpenGL Engine
OpenGL vendor: NVIDIA Corporation

Change History (3)

comment:1 by pett, 7 years ago

Component: Unassigned → Depiction
Milestone: → 0.9
Owner: set to Conrad Huang
Platform: → all
Priority: normal → critical
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → Tethers not hidden correctly

comment:2 by Tom Goddard, 7 years ago

Still broken in Dec 11, 2018 daily build.

Here's a more explicit example

open 2gpb
sel :142
hide sel ribbon

Note that the tether is still shown for the selected residue :142.

comment:3 by Conrad Huang, 7 years ago

Resolution: → fixed
Status: assigned → closed

Fixed in ec5804859.

Tethers were always displayed for visible backbone atoms. Now the ribbon for those atoms must be displayed as well.

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