Opened 7 years ago
Closed 7 years ago
#1348 closed defect (fixed)
mlp command broken
Reported by: | Elaine Meng | Owned by: | pett |
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Priority: | normal | Milestone: | |
Component: | Surface/Binding Analysis | Version: | |
Keywords: | Cc: | Tom Goddard | |
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Darwin-17.7.0-x86_64-i386-64bit ChimeraX Version: 0.7 (2018-08-07) Description mlp command broken in 0.7 (daily build won't start so I couldn't test in that) Log: UCSF ChimeraX version: 0.7 (2018-08-07) OpenGL version: 4.1 NVIDIA-10.32.0 355.11.10.10.40.102 OpenGL renderer: NVIDIA GeForce GTX 675MX OpenGL Engine OpenGL vendor: NVIDIA Corporation How to cite UCSF ChimeraX open 1zik Summary of feedback from opening 1zik fetched from pdb --- notes | Used PDBx fixed column width tables to speed up reading mmCIF file Used PDBx keywords to speed up reading mmCIF file Chain information for 1zik #1 --- Chain | Description A B | general control protein GCN4 1zik citation: Gonzalez Jr., L., Woolfson, D.N., Alber, T. (1996). Buried polar residues and structural specificity in the GCN4 leucine zipper. Nat.Struct.Biol., 3, 1011-1018. PMID: 8946854. DOI: 10.1038/nsb1296-1011 Opened mmCIF data containing 546 atoms and 514 bonds mlp Traceback (most recent call last): File "/Applications/ChimeraX-0.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/cmd_line/tool.py", line 205, in execute cmd.run(cmd_text) File "/Applications/ChimeraX-0.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/core/commands/cli.py", line 2561, in run result = ci.function(session, **kw_args) File "/Applications/ChimeraX-0.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/mlp/mlp.py", line 55, in mlp from chimerax.core.commands.surface import surface ModuleNotFoundError: No module named 'chimerax.core.commands.surface' ModuleNotFoundError: No module named 'chimerax.core.commands.surface' File "/Applications/ChimeraX-0.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site- packages/chimerax/mlp/mlp.py", line 55, in mlp from chimerax.core.commands.surface import surface See log for complete Python traceback. If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and describe what you were doing and include a copy of the contents of the log. Don't include any data you wish to remain private since a publicly viewable bug report will be created. OpenGL version: 4.1 NVIDIA-10.32.0 355.11.10.10.40.102 OpenGL renderer: NVIDIA GeForce GTX 675MX OpenGL Engine OpenGL vendor: NVIDIA Corporation
Change History (2)
comment:1 by , 7 years ago
Cc: | added |
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Component: | Unassigned → Surface/Binding Analysis |
Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → accepted |
Summary: | ChimeraX bug report submission → mlp command broken |
comment:2 by , 7 years ago
Resolution: | → fixed |
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Status: | accepted → closed |
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Updating an import was missing when the surface bundle got moved out of core