Opened 7 years ago

Closed 7 years ago

#1348 closed defect (fixed)

mlp command broken

Reported by: Elaine Meng Owned by: pett
Priority: normal Milestone:
Component: Surface/Binding Analysis Version:
Keywords: Cc: Tom Goddard
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        Darwin-17.7.0-x86_64-i386-64bit
ChimeraX Version: 0.7 (2018-08-07)
Description
mlp command broken in 0.7

(daily build won't start so I couldn't test in that)

Log:
UCSF ChimeraX version: 0.7 (2018-08-07)  
OpenGL version: 4.1 NVIDIA-10.32.0 355.11.10.10.40.102  
OpenGL renderer: NVIDIA GeForce GTX 675MX OpenGL Engine  
OpenGL vendor: NVIDIA Corporation  
How to cite UCSF ChimeraX  

open 1zik

Summary of feedback from opening 1zik fetched from pdb  
---  
notes | Used PDBx fixed column width tables to speed up reading mmCIF file  
Used PDBx keywords to speed up reading mmCIF file  
  
Chain information for 1zik #1  
---  
Chain | Description  
A B | general control protein GCN4  
  

1zik citation:    Gonzalez Jr., L., Woolfson, D.N., Alber, T. (1996). Buried
polar residues and structural specificity in the GCN4 leucine zipper.
Nat.Struct.Biol., 3, 1011-1018. PMID: 8946854. DOI: 10.1038/nsb1296-1011  
Opened mmCIF data containing 546 atoms and 514 bonds  

mlp

Traceback (most recent call last):  
  File
"/Applications/ChimeraX-0.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
packages/chimerax/cmd_line/tool.py", line 205, in execute  
    cmd.run(cmd_text)  
  File
"/Applications/ChimeraX-0.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
packages/chimerax/core/commands/cli.py", line 2561, in run  
    result = ci.function(session, **kw_args)  
  File
"/Applications/ChimeraX-0.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
packages/chimerax/mlp/mlp.py", line 55, in mlp  
    from chimerax.core.commands.surface import surface  
ModuleNotFoundError: No module named 'chimerax.core.commands.surface'  
  

ModuleNotFoundError: No module named 'chimerax.core.commands.surface'  
  
File
"/Applications/ChimeraX-0.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
packages/chimerax/mlp/mlp.py", line 55, in mlp  
from chimerax.core.commands.surface import surface  
  
See log for complete Python traceback.  
  
If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
describe what you were doing and include a copy of the contents of the log.
Don't include any data you wish to remain private since a publicly viewable
bug report will be created.  




OpenGL version: 4.1 NVIDIA-10.32.0 355.11.10.10.40.102
OpenGL renderer: NVIDIA GeForce GTX 675MX OpenGL Engine
OpenGL vendor: NVIDIA Corporation

Change History (2)

comment:1 by pett, 7 years ago

Cc: Tom Goddard added
Component: UnassignedSurface/Binding Analysis
Owner: set to pett
Platform: all
Project: ChimeraX
Status: newaccepted
Summary: ChimeraX bug report submissionmlp command broken

comment:2 by pett, 7 years ago

Resolution: fixed
Status: acceptedclosed

Updating an import was missing when the surface bundle got moved out of core

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