![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Jan 2, 2025:
- 10:57 PM Ticket #16551 (Find Cavities crash) created by
- […] best_model.pdb
- 10:45 PM Ticket #16550 (ImportError: libGLU.so.1: cannot open shared object file: No such file ...) created by
- […]
- 10:45 PM Ticket #16549 (ImportError: libGLU.so.1: cannot open shared object file: No such file ...) created by
- […]
- 6:51 PM Ticket #16548 (Crash in python_instances_of_class) created by
- […]
- 2:14 PM Ticket #16547 (Save X3D failure saving 2D labels) created by
- […]
- 1:34 PM Ticket #16546 (Silhouette outlines incorrect in saved image) created by
- […] model1-full.png
- 12:06 PM DeveloperMeetings edited by
- (diff)
- 12:06 PM DeveloperMeetings2024 created by
- 12:05 PM 2025-1-9 created by
- 12:04 PM DeveloperMeetings edited by
- (diff)
- 12:03 PM Dev2025-1-6 created by
- 12:02 PM GroupMeetings2024 edited by
- (diff)
- 12:01 PM GroupMeetings2024 created by
- 12:01 PM DeveloperMeetings edited by
- (diff)
- 11:55 AM Ticket #16543 (AlphaFold prediction is very slow) closed by
- can't reproduce: I ran your sequences using ChimeraX alphafold 2 prediction and it took …
- 11:38 AM Ticket #16544 (Infinite event-handling loop) closed by
- can't reproduce
- 11:29 AM Ticket #16542 (Crash on Mac waking from sleep) closed by
- duplicate
- 1:32 AM Ticket #16545 (Problem reading MTZ file) created by
- […] [[Image(...)]]
Jan 1, 2025:
Dec 31, 2024:
- 9:14 PM Ticket #16543 (AlphaFold prediction is very slow) created by
- […]
- 11:59 AM Ticket #16542 (Crash on Mac waking from sleep) created by
- […]
- 7:43 AM Ticket #16541 (Crash dock prepping 3max) created by
- […]
Dec 30, 2024:
Dec 27, 2024:
- 11:48 AM Ticket #16539 (Crash in python_instances_of_class) closed by
- duplicate
- 11:44 AM Ticket #16538 (Coordinates are NaN) closed by
- duplicate: PDB reading has been revised to exclude this since then
- 11:42 AM Ticket #16537 (Crash in python_instances_of_class) closed by
- duplicate
- 11:19 AM Ticket #16535 (Crash moving window between screens) closed by
- duplicate
- 11:18 AM Ticket #16534 (Crash on Mac waking from sleep) closed by
- duplicate
- 11:11 AM Ticket #16532 (Crash running open/save dialog) closed by
- can't reproduce
- 11:07 AM Ticket #16531 (Crash on Mac waking from sleep) closed by
- duplicate
- 11:05 AM Ticket #16530 (UnicodeError open PDBQT file) closed by
- can't reproduce: Probably needs some Windows codec; would need input file.
- 10:50 AM Ticket #16528 (Crash on Mac waking from sleep) closed by
- duplicate
- 10:11 AM Ticket #16527 (Error restoring alignment: Sequence does not have match maps) closed by
- duplicate: Duplicate of #16478
- 9:17 AM Ticket #16526 (Crash in event loop) closed by
- can't reproduce
Dec 26, 2024:
- 10:22 PM Ticket #16539 (Crash in python_instances_of_class) created by
- […]
- 7:42 PM Ticket #16538 (Coordinates are NaN) created by
- […]
- 4:33 PM Ticket #16537 (Crash in python_instances_of_class) created by
- […]
- 1:33 PM Ticket #16536 (Render By Attribute: switching attributes does not preserve marker radius) created by
- […]
- 7:00 AM Ticket #16535 (Crash moving window between screens) created by
- […]
- 12:37 AM Ticket #16534 (Crash on Mac waking from sleep) created by
- […]
Dec 25, 2024:
- 11:49 PM Ticket #16533 (DLL load failed while importing _pyKVFinder: The specified module ...) created by
- […]
- 10:48 PM Ticket #16532 (Crash running open/save dialog) created by
- […]
- 7:32 PM Ticket #16531 (Crash on Mac waking from sleep) created by
- […]
- 7:45 AM Ticket #16530 (UnicodeError open PDBQT file) created by
- […]
- 1:48 AM Ticket #16529 (Crash at startup) created by
- […]
Dec 24, 2024:
- 9:57 PM Ticket #16528 (Crash on Mac waking from sleep) created by
- […]
- 6:03 PM Ticket #16527 (Error restoring alignment: Sequence does not have match maps) created by
- […]
- 4:35 AM Ticket #16526 (Crash in event loop) created by
- […]
Dec 23, 2024:
- 4:51 PM Ticket #16525 (Problem installing XMAS) created by
- […]
- 11:16 AM Ticket #16524 (Flatpak success/fail message is wrong in nightly emails) created by
- 10:58 AM Ticket #16522 (KeyError (platform) checking for updates) closed by
- duplicate: Duplicate of #15775
- 10:54 AM Ticket #16521 (Ribbon: Array argument has non-numeric values) closed by
- duplicate: duplicate of #16520
- 10:52 AM Ticket #16519 (glGetIntegerv: invalid operation) closed by
- limitation: As the error message said: error | ChimeraX requires OpenGL graphics …
- 10:50 AM Ticket #16516 (Surface Color tool: list index out of range) closed by
- duplicate: The Surface Color panel can only display color palettes of 8 or fewer …
- 10:44 AM Ticket #16517 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
Dec 22, 2024:
- 11:57 PM Ticket #16523 (Crash in chem_group on Windows) created by
- […]
- 11:35 PM Ticket #16522 (KeyError (platform) checking for updates) created by
- […]
- 10:17 AM Ticket #16521 (Ribbon: Array argument has non-numeric values) created by
- […]
- 10:09 AM Ticket #16520 (Ribbon: Array argument has non-numeric values) created by
- […]
- 8:21 AM Ticket #16519 (glGetIntegerv: invalid operation) created by
- […]
- 4:11 AM Ticket #16518 (Session save: '/opt/homebrew/opt/lz4/lib/liblz4.1.dylib' (no such file)) created by
- […]
Dec 21, 2024:
- 8:07 PM Ticket #16517 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 2:43 PM Ticket #16516 (Surface Color tool: list index out of range) created by
- […]
- 2:00 PM Ticket #16515 (Startup errors from the 12/21 daily build) closed by
- not a bug: I notice that ChimeraX says you have two versions of matplotlib. One …
- 9:52 AM Ticket #16512 (Various startup errors) closed by
- duplicate: Closing this one since #16515 is from the actual daily build rather …
- 9:49 AM Ticket #16514 (Regular PDB file opened in MD Viewer) closed by
- duplicate
- 9:49 AM Ticket #16513 (Regular PDB file opened in MD Viewer) closed by
- limitation
- 9:47 AM Ticket #16515 (Startup errors from the 12/21 daily build) created by
- […]
- 5:03 AM Ticket #16514 (Regular PDB file opened in MD Viewer) created by
- […]
- 4:27 AM Ticket #16513 (Regular PDB file opened in MD Viewer) created by
- […]
Dec 20, 2024:
- 6:24 PM Ticket #16512 (Various startup errors) created by
- […]
- 6:19 PM Ticket #16510 (Crash in swap_buffers) closed by
- can't reproduce
- 5:59 PM Ticket #16511 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 2:28 PM Ticket #16489 (C++ libraries programmer documentation is blank) reopened by
- The C++ libraries page still looks blank to me …
- 2:25 PM Ticket #16489 (C++ libraries programmer documentation is blank) closed by
- fixed: It's not blank now.
- 2:14 PM Ticket #16500 (Could not install pyKVFinder module from PyPi repository) closed by
- fixed: Improved error reporting (I hope)
- 1:57 PM Ticket #16502 (Alignment observer not in observer list) closed by
- can't reproduce: I don't see how the widget can't be in the list of observers when …
- 1:20 PM Ticket #16510 (Crash in swap_buffers) created by
- […]
- 12:15 PM Ticket #16506 (Crash accessing StructureSeq.structure) closed by
- fixed: Lesson learned: don't run commands (which can fire triggers) in a …
- 11:44 AM Ticket #16509 (Crash moving window between screens) closed by
- duplicate: Same crash, same reporter as #16504
- 9:40 AM Ticket #16508 (Registration server unavailable) closed by
- can't reproduce: Hi Alexis, Thanks for reporting this. I was able to register from …
- 9:36 AM Ticket #16504 (Crash moving window between screens(?)) closed by
- duplicate
- 9:20 AM Ticket #16509 (Crash moving window between screens) created by
- […]
- 8:41 AM Ticket #16508 (Registration server unavailable) created by
- […]
- 7:26 AM Ticket #16507 (Crash running Modeller job) created by
- […]
- 6:00 AM Ticket #16506 (Crash accessing StructureSeq.structure) created by
- […]
- 3:05 AM Ticket #16409 (Failure importing clipper_python) closed by
- can't reproduce: This is the sort of issue that in my experience is near-impossible to …
- 2:38 AM Ticket #16435 (ISOLDE: itemgetter expected 1 argument, got 0) closed by
- fixed: Oops... upshot here is that the DBSCAN algorithm ISOLDE uses to find …
- 12:22 AM Ticket #16505 (error in running kvfinder) created by
- […]
Dec 19, 2024:
- 3:21 PM Ticket #16501 (Out of memory saving immense image) closed by
- limitation
- 1:29 PM Ticket #16498 (Crash in event loop) closed by
- can't reproduce
- 1:02 PM Ticket #16504 (Crash moving window between screens(?)) created by
- […]
- 12:52 PM 2024-12-19 edited by
- (diff)
- 10:57 AM Ticket #16503 (Include directory not added to compile command) created by
- […] sample_code_compile_error.txt
- 10:14 AM Ticket #16502 (Alignment observer not in observer list) created by
- […]
- 9:00 AM Ticket #16501 (Out of memory saving immense image) created by
- […]
- 8:01 AM Ticket #16500 (Could not install pyKVFinder module from PyPi repository) created by
- […]
- 7:41 AM Ticket #16499 (open 3MWP: URL can't contain control characters. 'ssh -D') created by
- […]
Dec 18, 2024:
- 11:44 PM Ticket #16498 (Crash in event loop) created by
- […]
- 4:39 PM Ticket #16488 (Sample code link broken) closed by
- fixed: Fixed. The git code checkout had changed file systems, so git config …
- 4:26 PM Ticket #16490 (Segmentation model(?) has no positions (is closed?)) closed by
- wontfix: Anyway this is unreproducible on 1.9 or the daily builds.
- 4:25 PM Ticket #16491 (Tried to get the position of deleted drawing "sagittal segmentation cursor") closed by
- fixed: Use 1.9 or a daily build.
- 2:31 PM Ticket #16497 (PSF/PDB combo) created by
- […]
- 11:58 AM phenix-12-19-24 edited by
- (diff)
- 11:45 AM phenix-12-19-24 edited by
- (diff)
- 11:44 AM phenix-12-19-24 edited by
- (diff)
- 11:16 AM phenix-12-19-24 edited by
- (diff)
- 10:54 AM Ticket #16496 (Startup crash / Unrecognized OpenGL version) created by
- […]
- 10:00 AM phenix-12-19-24 created by
- 9:59 AM Features edited by
- (diff)
- 9:52 AM Ticket #16495 (Crash using open/save dialog) closed by
- can't reproduce
- 9:50 AM Ticket #16494 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 9:48 AM Ticket #16493 (XTC file with Unicode path) closed by
- limitation: xdrfile uses fopen with a const char * path to open the file. Will …
- 9:23 AM Ticket #16492 (Crash in python_instances_of_class) closed by
- duplicate
- 8:51 AM Ticket #16495 (Crash using open/save dialog) created by
- […]
- 8:25 AM Ticket #16494 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 1:02 AM Ticket #16487 (Antechamber: permission denied) closed by
- fixed: That seems to have worked
- 12:56 AM Ticket #16493 (XTC file with Unicode path) created by
- […]
- 12:22 AM Ticket #16492 (Crash in python_instances_of_class) created by
- […]
Dec 17, 2024:
- 5:34 PM Ticket #16478 (Error restoring alignment: Sequence does not have match maps) closed by
- fixed: I had added copying of sequences during alignment initialization so …
- 2:08 PM Ticket #16491 (Tried to get the position of deleted drawing "sagittal segmentation cursor") created by
- […]
- 2:08 PM Ticket #16490 (Segmentation model(?) has no positions (is closed?)) created by
- […]
- 12:06 PM Ticket #16469 (Sequence wrong length during session restore) closed by
- can't reproduce: Hi Isabelle, Without access to your input files I can't reproduce the …
- 11:13 AM Ticket #16489 (C++ libraries programmer documentation is blank) created by
- […]
- 11:10 AM Ticket #16488 (Sample code link broken) created by
- […]
- 10:16 AM 2024-12-19 created by
- 10:15 AM DeveloperMeetings edited by
- (diff)
- 9:27 AM Ticket #16487 (Antechamber: permission denied) created by
- […]
- 9:11 AM Ticket #16486 (regarding the chimera_x) closed by
- duplicate: Asked and answered on the chimerax-users list.
- 9:01 AM Ticket #16485 (Crash showing Side View) closed by
- can't reproduce
- 8:57 AM Ticket #16482 (Crash on Mac waking from sleep) closed by
- duplicate
- 12:20 AM Ticket #16486 (regarding the chimera_x) created by
- […]
Dec 16, 2024:
- 11:33 PM Ticket #16485 (Crash showing Side View) created by
- […]
- 6:38 PM Ticket #16484 (setting dark mode on command line is incomplete) created by
- Forcing dark mode on the command with with "--color-scheme dark" when …
- 5:41 PM Dev2024-12-16 edited by
- (diff)
- 5:40 PM Dev2024-12-16 edited by
- (diff)
- 3:56 PM Ticket #16483 (Can't save session with Profile Grid) created by
- […]
- 3:26 PM Ticket #16482 (Crash on Mac waking from sleep) created by
- […]
- 2:02 PM Ticket #16481 (Port Metal Geometry tool) created by
- ...from Chimera
- 1:40 PM Ticket #16480 (Crash in event loop) closed by
- can't reproduce
- 1:39 PM Ticket #16480 (Crash in event loop) created by
- […]
- 1:26 PM Ticket #16479 (Crash on Mac waking from sleep) closed by
- duplicate: That is fine. I did not want to completely shut-off the flow of …
- 1:05 PM Ticket #16479 (Crash on Mac waking from sleep) created by
- […]
- 12:46 PM Ticket #16470 (find_close_points: NumPy array is not contiguous) closed by
- can't reproduce: Not able to reproduce this error. Maybe the code has changed since …
- 12:12 PM Ticket #16477 (Crash on Mac waking from sleep) closed by
- duplicate: This Mac ChimeraX crash is a bug in the Qt window toolkit and happens …
- 12:05 PM Dev2024-12-16 edited by
- (diff)
- 11:48 AM Ticket #16476 (Save trajectory in session: bytes object is too large) closed by
- duplicate: Duplicate of #16400
- 11:09 AM Ticket #16475 (MemoryError opening mmCIF files) closed by
- duplicate
- 11:08 AM Ticket #16474 (MemoryError opening mmCIF files) closed by
- duplicate
- 11:02 AM Ticket #16478 (Error restoring alignment: Sequence does not have match maps) created by
- As per summary
- 10:59 AM Ticket #16472 (IndexError showing MatchMaker alignment) closed by
- duplicate: Duplicate of #15758
- 10:44 AM Ticket #16471 (find_close_points: NumPy array is not contiguous) closed by
- duplicate
- 10:36 AM Ticket #16477 (Crash on Mac waking from sleep) created by
- […]
- 10:30 AM Ticket #16468 (Crash in garbage collection) closed by
- duplicate: Hi Chhandosee, Thanks for reporting this problem. It has been fixed …
- 5:47 AM Ticket #16476 (Save trajectory in session: bytes object is too large) created by
- […]
- 3:26 AM Ticket #16475 (MemoryError opening mmCIF files) created by
- […]
- 3:26 AM Ticket #16474 (MemoryError opening mmCIF files) created by
- […]
Dec 14, 2024:
- 1:51 PM Ticket #16465 (flip_matrix: 'NoneType' object is not subscriptable) closed by
- fixed: Fixed. Flipped volume matrix() routine did not properly handle the …
- 7:44 AM Ticket #16473 ('Open' command could provide more info with "unrecognized suffix") created by
- […]
- 7:00 AM Ticket #16472 (IndexError showing MatchMaker alignment) created by
- […]
- 1:38 AM Ticket #16471 (find_close_points: NumPy array is not contiguous) created by
- […]
- 12:58 AM Ticket #16470 (find_close_points: NumPy array is not contiguous) created by
- […]
Dec 13, 2024:
- 6:46 PM Ticket #16469 (Sequence wrong length during session restore) created by
- […]
- 4:14 PM Ticket #16468 (Crash in garbage collection) created by
- […]
- 1:25 PM Ticket #16467 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 12:24 PM Ticket #16454 (Crash in event loop) reopened by
- 9:24 AM Ticket #16466 (Crash on Mac waking from sleep) closed by
- duplicate
- 9:22 AM Ticket #16464 (Crash handling text input in save dialog) closed by
- can't reproduce
- 9:20 AM Ticket #16463 (Could not instantiate StructureSeq.structure) closed by
- can't reproduce
- 9:19 AM ChangeLog edited by
- (diff)
- 9:18 AM Ticket #16462 (Could not instantiate StructureSeq.structure) closed by
- can't reproduce
- 9:07 AM Ticket #16460 (Crash on Mac waking from sleep) closed by
- duplicate
- 8:22 AM Ticket #16466 (Crash on Mac waking from sleep) created by
- […]
- 6:03 AM Ticket #16465 (flip_matrix: 'NoneType' object is not subscriptable) created by
- […]
- 5:51 AM Ticket #16464 (Crash handling text input in save dialog) created by
- […]
- 2:57 AM Ticket #16463 (Could not instantiate StructureSeq.structure) created by
- […]
- 2:38 AM Ticket #16462 (Could not instantiate StructureSeq.structure) created by
- […]
Dec 12, 2024:
- 9:35 PM Ticket #16461 (Find Cavities crash) created by
- […]
- 6:09 PM Ticket #10294 (coordset slider doesn't have changed number of coord sets) closed by
- fixed: Coordinate set slider now replaces itself if the number of coordinate …
- 5:59 PM 2024-12-12 edited by
- (diff)
- 4:20 PM Ticket #16460 (Crash on Mac waking from sleep) created by
- […]
- 3:01 PM Ticket #16450 (Add Charge failure) closed by
- not a bug: The semi-empirical program (sqm) that is computing these charges for …
- 1:21 PM Milestone 1.9 completed
- * ScholAR tool * Raycasting for medical images * Greg will keep …
- 9:51 AM Ticket #16456 (Crash in garbage collection) closed by
- duplicate: This 1.9 version predates some of the fixes.
- 9:44 AM Ticket #16455 (Crash on Mac waking from sleep) closed by
- duplicate
- 9:43 AM Ticket #16454 (Crash in event loop) closed by
- can't reproduce: Not sure how a timer could be being stopped from another thread at startup
- 9:06 AM Ticket #16459 (Crash importing matplotlib via DICOM) created by
- […]
Dec 11, 2024:
- 5:24 PM Ticket #16457 (Session restore failed: decompression failure) created by
- […]
- 3:03 PM Ticket #16456 (Crash in garbage collection) created by
- […]
- 2:32 PM Ticket #16455 (Crash on Mac waking from sleep) created by
- […]
- 12:57 PM Ticket #16454 (Crash in event loop) created by
- […]
- 11:54 AM Ticket #16452 (MemoryError opening mmCIF file) closed by
- duplicate
- 11:53 AM Ticket #16451 (Crash opening mmCIF) closed by
- can't reproduce
- 11:15 AM Ticket #16453 (Command-C on Mac ChimeraX 1.9 does not copy selected text) closed by
- fixed: Fixed in 1.9. Made keystroke forwarding ignore lone Command key press …
- 11:11 AM Ticket #16449 (Crash in swap_buffers) closed by
- can't reproduce
- 11:09 AM Ticket #16448 (Crash in event loop) closed by
- can't reproduce
- 10:28 AM Ticket #16453 (Command-C on Mac ChimeraX 1.9 does not copy selected text) created by
- […]
- 10:10 AM Ticket #16447 (Could not instantiate StructureSeq.structure) closed by
- can't reproduce: Well, this person is persistent, I have to say.
- 10:03 AM Ticket #16446 (Could not instantiate StructureSeq.structure) closed by
- can't reproduce: Tried reproducing with just the first two structures but it seems that …
- 9:58 AM Ticket #16445 (Could not instantiate StructureSeq.structure) closed by
- can't reproduce
- 9:21 AM Ticket #16452 (MemoryError opening mmCIF file) created by
- […]
- 9:19 AM Ticket #16444 (Crash in garbage collection) closed by
- duplicate
- 3:45 AM Ticket #16451 (Crash opening mmCIF) created by
- […]
- 12:41 AM Ticket #16450 (Add Charge failure) created by
- […] 6vei_top1.pdb
Dec 10, 2024:
- 11:16 PM Ticket #16449 (Crash in swap_buffers) created by
- […]
- 10:31 PM Ticket #16448 (Crash in event loop) created by
- […]
- 5:55 PM ChangeLog edited by
- (diff)
- 1:50 PM Ticket #16442 (RFE: saving session automatically saves a named view) closed by
- fixed: Okay, the command "view name session-start" is now issued after a …
- 11:43 AM Dev2024-12-16 created by
- 11:43 AM 2024-12-12 created by
- 11:42 AM DeveloperMeetings edited by
- (diff)
- 11:21 AM Ticket #16447 (Could not instantiate StructureSeq.structure) created by
- […]
- 11:18 AM Ticket #16446 (Could not instantiate StructureSeq.structure) created by
- […]
- 11:09 AM Ticket #16445 (Could not instantiate StructureSeq.structure) created by
- […]
- 10:01 AM Ticket #16444 (Crash in garbage collection) created by
- […]
- 9:41 AM Ticket #16443 (Crash using open/save dialog) closed by
- can't reproduce
- 9:38 AM Ticket #16441 (Crash closing QDockWidget) closed by
- can't reproduce
- 5:08 AM Ticket #16443 (Crash using open/save dialog) created by
- […]
Dec 9, 2024:
- 4:40 PM Ticket #16371 (BLAST needs to deal with missing AlphaFold v1-3) closed by
- Made it so the GUI doesn't go below version 4 for AlphaFold
- 4:40 PM Ticket #16371 (BLAST needs to deal with missing AlphaFold v1-3) closed by
- fixed: Made it so the GUI doesn't go below version 4 for AlphaFold
- 3:59 PM Dev2024-12-9 edited by
- (diff)
- 3:02 PM Ticket #16238 (Download DICOM thread garbage collected while running) closed by
- fixed: Should be fixed as of …
- 2:32 PM Ticket #16442 (RFE: saving session automatically saves a named view) created by
- Every time I am working on some kind of figure I really wish that when …
- 11:49 AM Ticket #16434 (Similar Structures BLAST search with no matches: list index out of range) closed by
- fixed: Fixed in 1.9 and 1.10 daily builds. Made similarstructures blast and …
- 11:45 AM Ticket #16441 (Crash closing QDockWidget) created by
- […]
- 11:01 AM Ticket #16440 (H-Bonds: acc_phi_psi() bad number of arguments) closed by
- limitation: Bad connectivity
- 10:58 AM Ticket #16439 (Crash in python_instances_of_class) closed by
- duplicate
- 10:57 AM Ticket #16438 (Matchmaker: argument of type 'NoneType' is not iterable) closed by
- duplicate: Hi Baturay, Thanks for reporting this problem. It has been fixed in …
- 10:51 AM Ticket #16437 (Molecular Dynamics Viewer: list index out of range) closed by
- limitation
- 10:47 AM Ticket #16433 (Crash in garbage collection) closed by
- duplicate: Hi Mikhail, Thanks for reporting this problem. It is fixed in …
- 8:58 AM Ticket #16440 (H-Bonds: acc_phi_psi() bad number of arguments) created by
- […]
- 8:29 AM Ticket #16439 (Crash in python_instances_of_class) created by
- […]
- 7:47 AM Ticket #16438 (Matchmaker: argument of type 'NoneType' is not iterable) created by
- […]
Dec 7, 2024:
- 10:33 PM Ticket #16437 (Molecular Dynamics Viewer: list index out of range) created by
- […]
- 10:00 PM Ticket #16436 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 8:47 AM Ticket #16435 (ISOLDE: itemgetter expected 1 argument, got 0) created by
- […]
- 8:25 AM Ticket #16434 (Similar Structures BLAST search with no matches: list index out of range) created by
- […]
- 2:36 AM Ticket #16433 (Crash in garbage collection) created by
- […]
Dec 6, 2024:
- 2:25 PM Ticket #16432 ('ObjectLabels' object has no attribute '_structure_change_handler') closed by
- duplicate: Hi Eric, Thanks for reporting this problem. It was fixed a couple of …
- 2:21 PM Ticket #16431 (AddCharge: H-H bond in standard residue) closed by
- duplicate
- 1:38 PM Ticket #16432 ('ObjectLabels' object has no attribute '_structure_change_handler') created by
- […]
- 12:13 PM Ticket #16431 (AddCharge: H-H bond in standard residue) created by
- […]
- 11:33 AM Ticket #16430 (Graphics crash, macOS 13.1, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 11:28 AM Ticket #16429 (AlphaFold Error Plot: list index out of range) closed by
- duplicate: Fixed long ago in ChimeraX 1.8.
- 9:11 AM Ticket #16420 (Combine: Cannot set polymeric chain ID directly from Residue) closed by
- fixed: Fix: …
- 8:58 AM Ticket #16428 (Problem fetching UniProt entry) closed by
- duplicate
- 8:53 AM Ticket #16426 (Load DICOM hierarchy: a real number is required, not NoneType) closed by
- fixed: Fixed by restarting
- 8:51 AM Ticket #16425 (Crash in python_instances_of_class) closed by
- duplicate
- 8:48 AM Ticket #16424 (Crash in python_instances_of_class) closed by
- duplicate
- 8:47 AM Ticket #16423 (UnicodeDecodeError opening PDB file) closed by
- can't reproduce: Possibly control codes from a text editor.
- 8:03 AM Ticket #16430 (Graphics crash, macOS 13.1, Intel Iris Plus Graphics) created by
- […]
- 3:44 AM Ticket #16429 (AlphaFold Error Plot: list index out of range) created by
- […]
- 3:42 AM Ticket #16428 (Problem fetching UniProt entry) created by
- […]
- 1:24 AM Ticket #16427 (SEQCROW: problems reading ORCA output) created by
- […]
Dec 5, 2024:
- 8:37 PM Ticket #16426 (Load DICOM hierarchy: a real number is required, not NoneType) created by
- […]
- 5:44 PM Ticket #16425 (Crash in python_instances_of_class) created by
- […]
- 5:41 PM Ticket #16424 (Crash in python_instances_of_class) created by
- […]
- 4:00 PM NIAID2024 edited by
- (diff)
- 2:11 PM NIAID2024 edited by
- (diff)
- 2:05 PM NIAID2024 edited by
- (diff)
- 1:38 PM NIAID2024 edited by
- (diff)
- 11:20 AM Ticket #16423 (UnicodeDecodeError opening PDB file) created by
- […]
- 10:59 AM Ticket #16421 (FoldSeek: Permission denied writing temp file) closed by
- nonchimerax: ChimeraX tried to write a temporary mmCIF atomic model file to send to …
- 10:37 AM Ticket #16422 (Crash on Mac waking from sleep) closed by
- duplicate
- 10:28 AM Ticket #16419 (Crash running save dialog) closed by
- can't reproduce
- 10:25 AM Ticket #16418 (Crash opening mmCIF) closed by
- duplicate
- 10:21 AM 2024-12-5 edited by
- (diff)
- 10:19 AM Ticket #16415 (Crash in garbage collection) closed by
- duplicate
- 10:14 AM NIAID2024 edited by
- (diff)
- 4:17 AM Ticket #16422 (Crash on Mac waking from sleep) created by
- […]
Dec 4, 2024:
- 10:35 PM Ticket #16421 (FoldSeek: Permission denied writing temp file) created by
- […]
- 5:58 PM Ticket #16420 (Combine: Cannot set polymeric chain ID directly from Residue) created by
- […]
- 4:58 PM Ticket #16419 (Crash running save dialog) created by
- […]
- 4:46 PM Ticket #16418 (Crash opening mmCIF) created by
- […]
- 3:37 PM Ticket #16417 (Crash opening mmCIF) created by
- […]
- 3:19 PM Ticket #16416 (Crash opening mmCIF) created by
- […]
- 11:42 AM Ticket #16408 (Clipper: ArrayMemoryError creating NXmapHandler) closed by
- limitation: I suspect this memory error is not caused by ISOLDE. There is a …
- 11:39 AM Ticket #16405 (MemoryError saving map in session) closed by
- limitation: The user ran out of memory. It happened to be while saving a session …
- 11:05 AM Ticket #16415 (Crash in garbage collection) created by
- […]
- 10:58 AM Ticket #16414 (ISOLDE install failed in Mac ChimeraX 1.8 due to Clipper version) created by
- […]
- 10:02 AM Ticket #16412 (H-bonds: acc_phi_psi() number of arguments) closed by
- not a bug: Bad connectivity
- 10:01 AM Ticket #16411 (MemoryError opening mmCIF file) closed by
- duplicate
- 9:59 AM Ticket #16410 (Non-ASCII character in PDB file) closed by
- can't reproduce: Looking at the log, it seems there's a pretty fair chance the user …
- 9:51 AM Ticket #16407 (Crash handling text input in save dialog) closed by
- can't reproduce
- 9:50 AM Ticket #16406 ('ObjectLabels' object has no attribute '_structure_change_handler') closed by
- fixed: The changes to handle pseudobond-deletion-while-unopened moved the …
- 8:54 AM Ticket #16413 (Crash checking for changes during "lighting soft") created by
- […]
- 8:22 AM Ticket #16412 (H-bonds: acc_phi_psi() number of arguments) created by
- […]
- 7:53 AM Ticket #16411 (MemoryError opening mmCIF file) created by
- […]
- 7:09 AM Ticket #16410 (Non-ASCII character in PDB file) created by
- […]
- 5:57 AM Ticket #16409 (Failure importing clipper_python) created by
- […]
- 4:08 AM Ticket #16408 (Clipper: ArrayMemoryError creating NXmapHandler) created by
- […]
- 2:19 AM Ticket #16407 (Crash handling text input in save dialog) created by
- […]
Dec 3, 2024:
- 7:53 PM Ticket #16406 ('ObjectLabels' object has no attribute '_structure_change_handler') created by
- […]
- 7:31 PM Ticket #16405 (MemoryError saving map in session) created by
- […]
- 2:55 PM Ticket #16403 (Graphics crash, macOS 14.7.1, AMD Radeon Pro 5500M) closed by
- nonchimerax: Apple AMD graphics driver crash.
- 2:53 PM Ticket #16404 (Make bug reporter give advice for common crashes) closed by
- fixed
- 2:50 PM Ticket #16404 (Make bug reporter give advice for common crashes) created by
- Would like to have Bug Reporter detect common crashes that we cannot …
- 1:05 PM Dev2024-12-9 created by
- 1:04 PM 2024-12-5 created by
- 1:02 PM DeveloperMeetings edited by
- (diff)
- 10:52 AM Ticket #16398 (Graphics crash, macOS 14.7.1, AMD Radeon Pro 5500M, starting ISOLDE ...) closed by
- nonchimerax
- 10:21 AM Ticket #16374 (KVFinder "nearby" value not valid) closed by
- fixed: Hi Thibault, This is fixed in the daily build now. Since the fix …
- 8:42 AM Ticket #16401 (Add Charge failure) closed by
- limitation
- 8:39 AM Ticket #16399 (Crash in graphics driver during Qt drawing) closed by
- can't reproduce: Crashed in 1.6.1; Reported in 1.8
- 7:56 AM Ticket #16403 (Graphics crash, macOS 14.7.1, AMD Radeon Pro 5500M) created by
- […]
- 7:55 AM Ticket #16402 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 7:31 AM Ticket #16401 (Add Charge failure) created by
- […]
- 12:27 AM Ticket #16400 (Save trajectory in session: bytes object is too large) created by
- […]
- 12:03 AM Ticket #16399 (Crash in graphics driver during Qt drawing) created by
- […]
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