Error restoring alignment: Sequence does not have match maps

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.22631
ChimeraX Version: 1.10.dev202412130206 (2024-12-13 02:06:40 UTC)
Description
Replace this text with list of actions that caused this problem to occur

Log:
UCSF ChimeraX version: 1.10.dev202412130206 (2024-12-13)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> open D:\豆昕悦\综述\画图\图2.cxs format session

Unable to restore session, resetting.  
  
Traceback (most recent call last):  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\core\session.py", line 873, in restore  
obj = sm.restore_snapshot(self, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seq_view\tool.py", line 856, in restore_snapshot  
inst.region_manager.restore_state(data['region browser'])  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seq_view\region_browser.py", line 1109, in restore_state  
r.restore_state(region_state)  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seq_view\region_browser.py", line 364, in restore_state  
self.add_blocks(state['blocks'], make_cb=False)  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seq_view\region_browser.py", line 91, in add_blocks  
for x1, y1, x2, y2 in self.seq_canvas.bbox_list(cover_gaps=self.cover_gaps,
*block):  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 444, in bbox_list  
return self.lead_block.bbox_list(line1, line2, pos1, pos2, cover_gaps)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1769, in bbox_list  
return self.next_block.bbox_list(line1, line2, pos1, pos2, cover_gaps)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1769, in bbox_list  
return self.next_block.bbox_list(line1, line2, pos1, pos2, cover_gaps)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1769, in bbox_list  
return self.next_block.bbox_list(line1, line2, pos1, pos2, cover_gaps)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
[Previous line repeated 7 more times]  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1774, in bbox_list  
bboxes.append(self._box_corners(left,right,line1,line2))  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1802, in _box_corners  
uly = self.bottom_ruler_y + self.letter_gaps[1] + self.line_index[line1] * (  
~~~~~~~~~~~~~~~^^^^^^^  
KeyError: <chimerax.atomic.molobject.StructureSeq object at
0x0000018CABD475D0>  
  
Log from Wed Dec 25 09:53:41 2024UCSF ChimeraX version: 1.10.dev202412130206
(2024-12-13)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> open D:/豆昕悦/综述/画图/图1.cxs

Log from Wed Dec 25 09:07:37 2024UCSF ChimeraX version: 1.10.dev202412130206
(2024-12-13)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> set bgColor #ffffff00

Log from Tue Dec 24 21:22:23 2024UCSF ChimeraX version: 1.10.dev202412130206
(2024-12-13)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> open D:/豆昕悦/综述/画图/图1.cxs

Log from Tue Dec 24 20:50:16 2024 Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.10.dev202412130206 (2024-12-13)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open D:\豆昕悦\综述\画图\2qc8.cif format mmcif

2qc8.cif title:  
Crystal structure of human glutamine synthetase in complex with ADP and
methionine sulfoximine phosphate [more info...]  
  
Chain information for 2qc8.cif #1  
---  
Chain | Description | UniProt  
A B C D E F G H I J | Glutamine synthetase | GLNA_HUMAN 5-365  
  
Non-standard residues in 2qc8.cif #1  
---  
ADP — adenosine-5'-diphosphate  
CL — chloride ion  
MN — manganese (II) ion  
P3S — L-methionine-S-sulfoximine phosphate  
  

> set bgColor white

> hide atoms

> show cartoons

> select /A:10-365

2815 atoms, 2890 bonds, 356 residues, 1 model selected  

> select /B:10-365

2815 atoms, 2890 bonds, 356 residues, 1 model selected  

> select /E:126

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

33 atoms, 33 bonds, 4 residues, 1 model selected  

> select up

2811 atoms, 2886 bonds, 355 residues, 1 model selected  

> hide sel atoms

[Repeated 1 time(s)]

> hide sel cartoons

> select /G:128

10 atoms, 10 bonds, 1 residue, 1 model selected  

> select up

33 atoms, 33 bonds, 4 residues, 1 model selected  

> select up

2815 atoms, 2890 bonds, 356 residues, 1 model selected  

> hide sel cartoons

> select clear

> select /C:40

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

67 atoms, 66 bonds, 8 residues, 1 model selected  

> select up

2815 atoms, 2890 bonds, 356 residues, 1 model selected  

> hide sel cartoons

> select clear

[Repeated 1 time(s)]

> select /I:282

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select up

88 atoms, 91 bonds, 9 residues, 1 model selected  

> select up

2815 atoms, 2890 bonds, 356 residues, 1 model selected  

> hide sel cartoons

> select /D:181

11 atoms, 10 bonds, 1 residue, 1 model selected  

> select up

125 atoms, 127 bonds, 16 residues, 1 model selected  

> select up

2815 atoms, 2890 bonds, 356 residues, 1 model selected  

> hide sel cartoons

> select clear

> select /H:217

10 atoms, 10 bonds, 1 residue, 1 model selected  

> select up

178 atoms, 183 bonds, 21 residues, 1 model selected  

> select up

2815 atoms, 2890 bonds, 356 residues, 1 model selected  

> hide sel cartoons

> select /J:313

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select up

122 atoms, 124 bonds, 15 residues, 1 model selected  

> select up

2815 atoms, 2890 bonds, 356 residues, 1 model selected  

> hide sel cartoons

> select /F:312

11 atoms, 11 bonds, 1 residue, 1 model selected  

> select up

122 atoms, 124 bonds, 15 residues, 1 model selected  

> select up

2815 atoms, 2890 bonds, 356 residues, 1 model selected  

> hide sel cartoons

> select /A:10-365

2815 atoms, 2890 bonds, 356 residues, 1 model selected  

> select /B:10-365

2815 atoms, 2890 bonds, 356 residues, 1 model selected  

> select :ADP

270 atoms, 290 bonds, 10 residues, 1 model selected  

> select :ADP

270 atoms, 290 bonds, 10 residues, 1 model selected  

> show sel target ab

> color sel yellow

> style sel ball

Changed 270 atom styles  
Drag select of 135 atoms, 14 residues, 145 bonds  

> select clear

Drag select of 108 atoms, 116 bonds  

> hide sel cartoons

> hide sel atoms

Drag select of 27 atoms, 4 residues, 29 bonds  

> select clear

> select /G:501@C2

1 atom, 1 residue, 1 model selected  

> select up

27 atoms, 29 bonds, 1 residue, 1 model selected  

> select up

2867 atoms, 2933 bonds, 368 residues, 1 model selected  

> hide sel atoms

> select up

2 atoms, 1 bond, 1 residue, 1 model selected  

> select up

27 atoms, 29 bonds, 1 residue, 1 model selected  

> hide sel atoms

> select clear

> select /J:501@PB

1 atom, 1 residue, 1 model selected  

> select up

27 atoms, 29 bonds, 1 residue, 1 model selected  

> hide sel atoms

> select clear

[Repeated 1 time(s)]

> select /A:501@PA

1 atom, 1 residue, 1 model selected  

> select up

27 atoms, 29 bonds, 1 residue, 1 model selected  

> hide sel atoms

Drag select of 27 atoms, 29 bonds  

> hide sel atoms

> select /A:10-365

2815 atoms, 2890 bonds, 356 residues, 1 model selected  

> select /B:10-365

2815 atoms, 2890 bonds, 356 residues, 1 model selected  

> select :MN

30 atoms, 30 residues, 1 model selected  

> show sel target ab

> color sel hot pink

Drag select of 9 atoms  

> hide sel atoms

Drag select of 6 atoms  

> hide sel atoms

> select /B:274

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

113 atoms, 113 bonds, 14 residues, 1 model selected  

> select up

2815 atoms, 2890 bonds, 356 residues, 1 model selected  

> ui tool show "Color Actions"

> color sel #ffe0aeff

> color sel #ffe0ae01

> color sel #ffe0ae0f

> color sel #ffe0ae01

> color sel #ffe0ae0a

> color sel #ffe0ae64

> color sel #ffe0ae01

> color sel #ffe0ae0c

> color sel #ffe0ae78

> select /A:226

10 atoms, 10 bonds, 1 residue, 1 model selected  

> select up

178 atoms, 183 bonds, 21 residues, 1 model selected  

> select up

2815 atoms, 2890 bonds, 356 residues, 1 model selected  

> ui tool show "Color Actions"

> color sel #aaff7f78

> select clear

Drag select of 6 atoms  

> hide sel atoms

Drag select of 3 atoms  

> hide sel atoms

> select /A:402@MN

1 atom, 1 residue, 1 model selected  

> hide sel atoms

> select /A:403@MN

1 atom, 1 residue, 1 model selected  

> hide sel atoms

> select /A:401@MN

1 atom, 1 residue, 1 model selected  

> hide sel atoms

> select /B:268

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select up

113 atoms, 113 bonds, 14 residues, 1 model selected  

> select up

2815 atoms, 2890 bonds, 356 residues, 1 model selected  

> ui tool show "Color Actions"

> color sel #aaff7f01

> color sel #aaff7f0f

> color sel #aaff7f96

> color sel #ffe0ae96

> select clear

[Repeated 1 time(s)]

> select /B:330

4 atoms, 3 bonds, 1 residue, 1 model selected  

> select up

63 atoms, 63 bonds, 8 residues, 1 model selected  

> ui tool show "Color Actions"

> color sel #ffe0ae08

> color sel #ffe0ae50

> select clear

> select /B:401@MN

1 atom, 1 residue, 1 model selected  

> select /A:74

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

27 atoms, 26 bonds, 4 residues, 1 model selected  

> select up

2815 atoms, 2890 bonds, 356 residues, 1 model selected  

> select /A:72

4 atoms, 3 bonds, 1 residue, 1 model selected  

> select up

27 atoms, 26 bonds, 4 residues, 1 model selected  
Drag select of 1 atoms, 50 residues  

> select clear

Drag select of 1 atoms, 46 residues  

> ui tool show "Color Actions"

> select clear

[Repeated 1 time(s)]Drag select of 10 residues  

> ui tool show "Show Sequence Viewer"

> sequence chain /A

Alignment identifier is 1/A  

> select /A:53

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select /A:53-59

55 atoms, 55 bonds, 7 residues, 1 model selected  

> select
> /A:10-19,53-57,65-67,71-74,113-128,172-187,212-232,258-263,266-288,295-299,326-333,347-360

1066 atoms, 1074 bonds, 131 residues, 1 model selected  

> select /A:71

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select /A:71-81

83 atoms, 84 bonds, 11 residues, 1 model selected  

> select /A:68

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:68-74

50 atoms, 49 bonds, 7 residues, 1 model selected  

> select /A:67

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select /A:67-74

57 atoms, 56 bonds, 8 residues, 1 model selected  

> select /A:65

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select /A:65-75

75 atoms, 74 bonds, 11 residues, 1 model selected  

> ui tool show "Color Actions"

> color sel #aaff7f50

> color sel #aaff7f05

> color sel #aaff7f32

> select clear

> save C:/Users/20602/Desktop/图1.cxs

——— End of log from Tue Dec 24 20:50:16 2024 ———

> view name session-start

opened ChimeraX session  

> save D:/豆昕悦/综述/画图/图1.tif width 2000 height 1584 supersample 3
> transparentBackground true

> select /B:270

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

113 atoms, 113 bonds, 14 residues, 1 model selected  

> select up

2815 atoms, 2890 bonds, 356 residues, 1 model selected  

> ui tool show "Color Actions"

> color sel #ffffff02

> color sel #ffffff14

> color sel #ffffffc8

> color sel #ffe0aec8

> select /A:114

11 atoms, 10 bonds, 1 residue, 1 model selected  

> select up

94 atoms, 94 bonds, 11 residues, 1 model selected  

> select up

2815 atoms, 2890 bonds, 356 residues, 1 model selected  

> ui tool show "Color Actions"

> color sel #aaff7fc8

> select /B:333

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select up

63 atoms, 63 bonds, 8 residues, 1 model selected  

> ui tool show "Color Actions"

> color sel #ffe0aec8

> color sel #ffe0ae01

> color sel #ffe0ae0a

> color sel #ffe0ae64

> select /A:74

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

27 atoms, 26 bonds, 4 residues, 1 model selected  

> ui tool show "Color Actions"

> color sel #aaff7f64

> select clear

> save D:/豆昕悦/综述/画图/图1.cxs

——— End of log from Tue Dec 24 21:22:23 2024 ———

> view name session-start

opened ChimeraX session  

> select :P3S

150 atoms, 140 bonds, 10 residues, 1 model selected  

> show sel target ab

> select clear

> undo

[Repeated 2 time(s)]

> select :P3S

150 atoms, 140 bonds, 10 residues, 1 model selected  

> hide #* target a

> show sel target ab

> select clear

> undo

[Repeated 3 time(s)]

> select :P3S

150 atoms, 140 bonds, 10 residues, 1 model selected  

> show sel target ab

> select clear

Drag select of 75 atoms, 70 bonds  

> hide sel atoms

Drag select of 28 atoms, 28 bonds  

> hide sel atoms

Drag select of 15 atoms, 14 bonds  

> hide sel atoms

> select up

2 atoms, 1 bond, 1 residue, 1 model selected  

> select up

15 atoms, 14 bonds, 1 residue, 1 model selected  

> hide sel atoms

> select up

2 atoms, 1 bond, 1 residue, 1 model selected  

> select up

15 atoms, 14 bonds, 1 residue, 1 model selected  

> style sel ball

Changed 15 atom styles  

> color sel blue

> color sel orange

> select clear

[Repeated 1 time(s)]

> select /A:75

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select up

2815 atoms, 2890 bonds, 356 residues, 1 model selected  

> select clear

> select /A:76

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

90 atoms, 92 bonds, 11 residues, 1 model selected  

> select clear

> select /A:74

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

27 atoms, 26 bonds, 4 residues, 1 model selected  

> select up

2815 atoms, 2890 bonds, 356 residues, 1 model selected  

> ui tool show "Show Sequence Viewer"

> sequence chain /A

Alignment identifier is 1/A  

> select /A:75

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select /A:75-76

14 atoms, 13 bonds, 2 residues, 1 model selected  

> ui tool show "Color Actions"

> color sel #aaff7fff

> color sel #aaff7f08

> color sel #aaff7f50

> save D:/豆昕悦/综述/画图/图1.cxs

——— End of log from Wed Dec 25 09:07:37 2024 ———

> view name session-start

opened ChimeraX session  

> select clear

> select /B:254

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select up

48 atoms, 49 bonds, 6 residues, 1 model selected  

> select /B:331

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select up

63 atoms, 63 bonds, 8 residues, 1 model selected  

> ui tool show "Color Actions"

> color sel #ffe0aeff

> color sel #ffe0ae01

> color sel #ffe0ae0c

> color sel #ffe0ae78

> select /A:76

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select add /A:75

14 atoms, 12 bonds, 2 residues, 1 model selected  

> select add /A:74

22 atoms, 19 bonds, 3 residues, 1 model selected  

> select add /A:73

28 atoms, 24 bonds, 4 residues, 1 model selected  

> select add /A:72

32 atoms, 27 bonds, 5 residues, 1 model selected  

> select add /A:71

41 atoms, 35 bonds, 6 residues, 1 model selected  

> select add /A:70

47 atoms, 40 bonds, 7 residues, 1 model selected  

> ui tool show "Color Actions"

> color sel #aaff7f78

> color sel #aaff7f01

> color sel #aaff7f0c

> color sel #aaff7f78

> select clear

> save D:/豆昕悦/综述/画图/图1-2.tif width 2000 height 2000 supersample 3
> transparentBackground true

> ui tool show "Show Sequence Viewer"

> sequence chain /A

Alignment identifier is 1/A  

> select /A:324

11 atoms, 10 bonds, 1 residue, 1 model selected  

> select /A:324

11 atoms, 10 bonds, 1 residue, 1 model selected  

> show sel target ab

> color sel red

> undo

[Repeated 1 time(s)]

> ui tool show "Show Sequence Viewer"

> sequence chain /B

Alignment identifier is 1/B  

> select /B:324

11 atoms, 10 bonds, 1 residue, 1 model selected  

> select /B:324

11 atoms, 10 bonds, 1 residue, 1 model selected  

> show sel target ab

> style sel stick

Changed 11 atom styles  

> color sel red

> style sel ball

Changed 11 atom styles  

> label sel text "{0.name} {0.number}{0.insertion_code}"

> select clear

[Repeated 1 time(s)]

> ui mousemode right "move label"

> ui tool show "Show Sequence Viewer"

> sequence chain /B

Alignment identifier is 1/B  

> select /B:76

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /B:76

8 atoms, 7 bonds, 1 residue, 1 model selected  

> cartoon sel

> color sel cyan

> style sel ball

Changed 8 atom styles  

> select clear

> undo

[Repeated 4 time(s)]

> select clear

> ui tool show "Show Sequence Viewer"

> sequence chain /A

Alignment identifier is 1/A  

> select /A:76

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:76

8 atoms, 7 bonds, 1 residue, 1 model selected  

> color sel blue

> style sel ball

Changed 8 atom styles  

> show sel target ab

> label sel text "{0.name} {0.number}{0.insertion_code}"

> select /A:319

11 atoms, 10 bonds, 1 residue, 1 model selected  

> select /A:319

11 atoms, 10 bonds, 1 residue, 1 model selected  

> show sel target ab

> color sel hot pink

> select clear

> undo

[Repeated 3 time(s)]

> select /B:319

11 atoms, 10 bonds, 1 residue, 1 model selected  

> select /B:319

11 atoms, 10 bonds, 1 residue, 1 model selected  

> show sel target ab

> style sel ball

Changed 11 atom styles  

> color sel blue

> label sel attribute name

> label sel text "{0.name} {0.number}{0.insertion_code}"

> color sel black

> select clear

> select /A:196

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select /A:196

9 atoms, 8 bonds, 1 residue, 1 model selected  

> show sel target ab

> color sel red

> select clear

> undo

[Repeated 3 time(s)]

> select /B:196

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select /B:196

9 atoms, 8 bonds, 1 residue, 1 model selected  

> show sel target ab

> ui tool show "Color Actions"

> color sel #5555ff78

> color sel #aa55ff78

> ui tool show "Color Actions"

> color sel #55aa0078

> color sel #aa55ff78

> color sel #aa55ff02

> color sel #aa55ff16

> color sel #aa55ffe1

> style sel ball

Changed 9 atom styles  

> label sel text "{0.name} {0.number}{0.insertion_code}"

> save D:/豆昕悦/综述/画图/图2.cxs

——— End of log from Wed Dec 25 09:53:41 2024 ———

Traceback (most recent call last):  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\core\session.py", line 873, in restore  
obj = sm.restore_snapshot(self, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seq_view\tool.py", line 856, in restore_snapshot  
inst.region_manager.restore_state(data['region browser'])  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seq_view\region_browser.py", line 1109, in restore_state  
r.restore_state(region_state)  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seq_view\region_browser.py", line 364, in restore_state  
self.add_blocks(state['blocks'], make_cb=False)  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seq_view\region_browser.py", line 91, in add_blocks  
for x1, y1, x2, y2 in self.seq_canvas.bbox_list(cover_gaps=self.cover_gaps,
*block):  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 444, in bbox_list  
return self.lead_block.bbox_list(line1, line2, pos1, pos2, cover_gaps)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1769, in bbox_list  
return self.next_block.bbox_list(line1, line2, pos1, pos2, cover_gaps)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1769, in bbox_list  
return self.next_block.bbox_list(line1, line2, pos1, pos2, cover_gaps)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1769, in bbox_list  
return self.next_block.bbox_list(line1, line2, pos1, pos2, cover_gaps)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
[Previous line repeated 7 more times]  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1774, in bbox_list  
bboxes.append(self._box_corners(left,right,line1,line2))  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1802, in _box_corners  
uly = self.bottom_ruler_y + self.letter_gaps[1] + self.line_index[line1] * (  
~~~~~~~~~~~~~~~^^^^^^^  
KeyError: <chimerax.atomic.molobject.StructureSeq object at
0x0000018CABD475D0>  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 320, in interceptRequest  
self._callback(info)  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 93, in _intercept  
return interceptor(request_info, *args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 353, in intercept  
chimerax_intercept(*args, view=view, session=session)  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 455, in chimerax_intercept  
session.ui.thread_safe(defer, session, qurl.url(no_formatting), from_dir)  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\ui\gui.py", line 443, in thread_safe  
func(*args, **kw)  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 446, in defer  
cxcmd(session, topic)  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 464, in cxcmd  
run(session, cmd)  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\core\commands\run.py", line 49, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3213, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\open_command\cmd.py", line 132, in cmd_open  
models = Command(session, registry=registry).run(provider_cmd_text,
log=log)[0]  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3213, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\open_command\cmd.py", line 215, in provider_open  
models, status = collated_open(session, None, [data], data_format,
_add_models,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\open_command\cmd.py", line 527, in collated_open  
return remember_data_format()  
^^^^^^^^^^^^^^^^^^^^^^  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\open_command\cmd.py", line 497, in remember_data_format  
models, status = func(*func_args, **func_kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\core_formats\\__init__.py", line 37, in open  
return cxs_open(session, data, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\core\session.py", line 1168, in open  
session.restore(stream, path=path, resize_window=resize_window,
combine=combine)  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\core\session.py", line 886, in restore  
self.reset()  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\core\session.py", line 625, in reset  
sm.reset_state(container, self)  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seqalign\manager.py", line 275, in reset_state  
alignment._destroy()  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seqalign\alignment.py", line 817, in _destroy  
aseq.match_maps[sseq].mod_handler.remove()  
^^^^^^^^^^^^^^^  
AttributeError: 'StructureSeq' object has no attribute 'match_maps'  
  
AttributeError: 'StructureSeq' object has no attribute 'match_maps'  
  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seqalign\alignment.py", line 817, in _destroy  
aseq.match_maps[sseq].mod_handler.remove()  
^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seqalign\alignment.py", line 889, in _mmap_mod_cb  
self.disassociate(self._sseq_to_chain[match_map.struct_seq], demotion=True)  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seqalign\alignment.py", line 502, in disassociate  
if self.intrinsic and len(aseq.match_maps) == 1:  
^^^^^^^^^^^^^^^  
AttributeError: 'StructureSeq' object has no attribute 'match_maps'  
  
Error processing trigger "modified":  
AttributeError: 'StructureSeq' object has no attribute 'match_maps'  
  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seqalign\alignment.py", line 502, in disassociate  
if self.intrinsic and len(aseq.match_maps) == 1:  
^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 252, in _actually_resize  
self._reformat()  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1027, in _reformat  
self.lead_block = SeqBlock(label_scene, self.main_scene,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 1646, in __init__  
self.layout_lines(alignment.seqs, self.normal_label_color)  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 2342, in layout_lines  
self._layout_line(line, label_color, bli, end)  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 2292, in _layout_line  
font=self._label_font(line))  
^^^^^^^^^^^^^^^^^^^^^^  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 2200, in _label_font  
if self.has_associated_structures(line):  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 2144, in
has_associated_structures  
and [chain for chain in line.match_maps.keys() if not
chain.structure.deleted]:  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 2144, in <listcomp>  
and [chain for chain in line.match_maps.keys() if not
chain.structure.deleted]:  
^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'deleted'  
  
AttributeError: 'NoneType' object has no attribute 'deleted'  
  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seq_view\seq_canvas.py", line 2144, in  
and [chain for chain in line.match_maps.keys() if not
chain.structure.deleted]:  
^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> open C:/Users/20602/Desktop/第二步.cxs

Unable to restore session, resetting.  
  
Traceback (most recent call last):  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\core\session.py", line 837, in restore  
self.reset()  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\core\session.py", line 625, in reset  
sm.reset_state(container, self)  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seqalign\manager.py", line 275, in reset_state  
alignment._destroy()  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seqalign\alignment.py", line 817, in _destroy  
aseq.match_maps[sseq].mod_handler.remove()  
^^^^^^^^^^^^^^^  
AttributeError: 'StructureSeq' object has no attribute 'match_maps'  
  
Traceback (most recent call last):  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\core\session.py", line 837, in restore  
self.reset()  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\core\session.py", line 625, in reset  
sm.reset_state(container, self)  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seqalign\manager.py", line 275, in reset_state  
alignment._destroy()  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seqalign\alignment.py", line 817, in _destroy  
aseq.match_maps[sseq].mod_handler.remove()  
^^^^^^^^^^^^^^^  
AttributeError: 'StructureSeq' object has no attribute 'match_maps'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\open_command\dialog.py", line 334, in _qt_safe  
run(session, "open " + " ".join([FileNameArg.unparse(p) for p in paths]) + (""  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\core\commands\run.py", line 49, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3213, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\open_command\cmd.py", line 132, in cmd_open  
models = Command(session, registry=registry).run(provider_cmd_text,
log=log)[0]  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3213, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\open_command\cmd.py", line 215, in provider_open  
models, status = collated_open(session, None, [data], data_format,
_add_models,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\open_command\cmd.py", line 527, in collated_open  
return remember_data_format()  
^^^^^^^^^^^^^^^^^^^^^^  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\open_command\cmd.py", line 497, in remember_data_format  
models, status = func(*func_args, **func_kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\core_formats\\__init__.py", line 37, in open  
return cxs_open(session, data, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\core\session.py", line 1168, in open  
session.restore(stream, path=path, resize_window=resize_window,
combine=combine)  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\core\session.py", line 886, in restore  
self.reset()  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\core\session.py", line 625, in reset  
sm.reset_state(container, self)  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seqalign\manager.py", line 275, in reset_state  
alignment._destroy()  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seqalign\alignment.py", line 817, in _destroy  
aseq.match_maps[sseq].mod_handler.remove()  
^^^^^^^^^^^^^^^  
AttributeError: 'StructureSeq' object has no attribute 'match_maps'  
  
AttributeError: 'StructureSeq' object has no attribute 'match_maps'  
  
File "D:\AppGallery\ChimeraX 1.10.dev202412130206\bin\Lib\site-
packages\chimerax\seqalign\alignment.py", line 817, in _destroy  
aseq.match_maps[sseq].mod_handler.remove()  
^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 - Build 31.0.101.4146
OpenGL renderer: Intel(R) Iris(R) Xe Graphics
OpenGL vendor: Intel

Python: 3.11.4
Locale: zh_CN.cp936
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: windows

Manufacturer: HUAWEI
Model: KLVG-XX
OS: Microsoft Windows 11 家庭中文版 (Build 22631)
Memory: 16,890,716,160
MaxProcessMemory: 137,438,953,344
CPU: 16 13th Gen Intel(R) Core(TM) i5-1340P
OSLanguage: zh-CN

Installed Packages:
    alabaster: 1.0.0
    anyio: 4.7.0
    appdirs: 1.4.4
    asttokens: 3.0.0
    auditwheel: 6.1.0
    babel: 2.16.0
    beautifulsoup4: 4.12.3
    blockdiag: 3.0.0
    blosc2: 3.0.0
    build: 1.2.1
    certifi: 2024.8.30
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.0
    ChimeraX-AddCharge: 1.5.18
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.5
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.16.1
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.59
    ChimeraX-AtomicLibrary: 14.1.11
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.4.0
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.7
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.10.dev202412130206
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.4
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2.7
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.3
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.5
    ChimeraX-Label: 1.1.14
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.6
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7.2
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14.2
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.18
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.14
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.7
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.2
    ChimeraX-ProfileGrids: 1.0
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.2
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.7
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.15
    ChimeraX-Shape: 1.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.0
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.19.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.42.2
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    comtypes: 1.4.5
    contourpy: 1.3.1
    coverage: 7.6.9
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.0.10
    debugpy: 1.8.9
    decorator: 5.1.1
    docutils: 0.21.2
    executing: 2.1.0
    filelock: 3.15.4
    fonttools: 4.55.3
    funcparserlib: 2.0.0a0
    glfw: 2.8.0
    grako: 3.16.5
    h11: 0.14.0
    h5py: 3.12.1
    html2text: 2024.2.26
    httpcore: 1.0.7
    httpx: 0.28.1
    idna: 3.10
    ihm: 1.3
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    iniconfig: 2.0.0
    ipykernel: 6.29.5
    ipython: 8.26.0
    ipywidgets: 8.1.5
    jedi: 0.19.1
    Jinja2: 3.1.4
    jupyter_client: 8.6.2
    jupyter_core: 5.7.2
    jupyterlab_widgets: 3.0.13
    kiwisolver: 1.4.7
    line_profiler: 4.1.3
    lxml: 5.2.2
    lz4: 4.3.3
    MarkupSafe: 3.0.2
    matplotlib: 3.9.2
    matplotlib-inline: 0.1.7
    msgpack: 1.0.8
    ndindex: 1.9.2
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.2
    numpy: 1.26.4
    openvr: 1.26.701
    packaging: 23.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pillow: 10.4.0
    pip: 24.2
    pkginfo: 1.11.1
    platformdirs: 4.3.6
    pluggy: 1.5.0
    prompt_toolkit: 3.0.48
    psutil: 6.0.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pyelftools: 0.31
    Pygments: 2.18.0
    pynmrstar: 3.3.4
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.3401
    pyparsing: 3.2.0
    pyproject_hooks: 1.2.0
    PyQt6: 6.7.1
    PyQt6-Qt6: 6.7.3
    PyQt6-WebEngine: 6.7.0
    PyQt6-WebEngine-Qt6: 6.7.3
    PyQt6-WebEngineSubwheel-Qt6: 6.7.3
    PyQt6_sip: 13.8.0
    pytest: 8.3.4
    pytest-cov: 6.0.0
    python-dateutil: 2.9.0.post0
    pytz: 2024.2
    pywin32: 306
    pyzmq: 26.2.0
    qtconsole: 5.5.2
    QtPy: 2.4.2
    qtshim: 1.0
    RandomWords: 0.4.0
    requests: 2.32.3
    scipy: 1.14.0
    setuptools: 72.1.0
    sfftk-rw: 0.8.1
    six: 1.16.0
    sniffio: 1.3.1
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.6
    Sphinx: 8.0.2
    sphinx-autodoc-typehints: 2.2.3
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    stack-data: 0.6.3
    superqt: 0.6.3
    tables: 3.10.1
    tcia_utils: 1.5.1
    tifffile: 2024.7.24
    tinyarray: 1.2.4
    tornado: 6.4.2
    traitlets: 5.14.3
    typing_extensions: 4.12.2
    tzdata: 2024.2
    urllib3: 2.2.3
    wcwidth: 0.2.13
    webcolors: 24.6.0
    wheel: 0.43.0
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.13
    WMI: 1.5.1

[pett]

Duplicate of #16478