![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Jan 13, 2023:
- 2:18 PM Ticket #8304 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: Hi Andrew, Thanks for reporting this problem. We believe it is fixed …
- 2:15 PM Ticket #8303 (Crash saving image) closed by
- can't reproduce
- 2:12 PM Ticket #8304 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 2:08 PM Ticket #8303 (Crash saving image) created by
- […]
- 1:55 PM phenix-1-12-23 edited by
- (diff)
- 1:54 PM Features edited by
- (diff)
- 1:54 PM Features edited by
- (diff)
- 12:02 PM Ticket #8299 (Graphics crash, macOS 13.1, M1 Pro graphics) closed by
- nonchimerax: Apple M1 graphics driver crash. This is the first one I have ever …
- 11:51 AM Ticket #8301 (New AlphaFold errors) closed by
- nonchimerax: I worked on this error 8 months ago, ticket #6961 …
- 11:38 AM Ticket #8302 (Log panel is blank, Windows) closed by
- nonchimerax: […]
- 11:37 AM Ticket #8302 (Log panel is blank, Windows) created by
- Log panel is blank. Also Help Viewer shows nothing. Apparently Qt …
- 11:10 AM Ticket #8301 (New AlphaFold errors) created by
- […]
- 10:46 AM Ticket #8300 (Didn't find section 'Peptide bond' in tab 'ISOLDE') closed by
- limitation: Currently you need to restart ChimeraX after installing ISOLDE for the …
- 9:48 AM Ticket #8298 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce
- 9:46 AM Ticket #8297 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce
- 6:31 AM Ticket #8300 (Didn't find section 'Peptide bond' in tab 'ISOLDE') created by
- […]
- 1:34 AM Ticket #8299 (Graphics crash, macOS 13.1, M1 Pro graphics) created by
- […]
Jan 12, 2023:
- 6:30 PM Ticket #8298 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 4:39 PM Ticket #8297 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 4:06 PM 2023-1-12 edited by
- (diff)
- 4:05 PM 2023-1-12 edited by
- (diff)
- 4:05 PM 2023-1-12 edited by
- (diff)
- 2:59 PM Ticket #8295 (Allow different case for fetch database name) closed by
- fixed
- 1:14 PM Ticket #8294 (Code signature problem?) closed by
- nonchimerax: The code signature for ChimeraX 1.5 is of course fine, since it works …
- 1:08 PM Ticket #8293 (Graphics crash, macOS 10.15.4, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 12:59 PM Ticket #8296 (Add movieFramerate option to "coordset slider" command) closed by
- fixed: Done. The default recorded movie playback speed is 25 frames per …
- 12:54 PM Ticket #8296 (Add movieFramerate option to "coordset slider" command) created by
- […]
- 9:00 AM Ticket #8295 (Allow different case for fetch database name) created by
- […]
- 8:48 AM Ticket #8280 (ISOLDE: 'close' after 'sim pause': 'AtomicStructure' object has no ...) closed by
- fixed: OK, ISOLDE now recovers gracefully if the working model is deleted …
- 8:06 AM Ticket #8294 (Code signature problem?) created by
- […]
Jan 11, 2023:
- 11:04 PM Ticket #8293 (Graphics crash, macOS 10.15.4, Intel Iris Plus Graphics) created by
- […]
- 6:12 PM Ticket #8292 (Adding DisplayVersion to registry for WIndows installation) closed by
- fixed: ChimeraX uses innosetup to build the installer. I've added the …
- 3:49 PM Training edited by
- (diff)
- 3:44 PM Training edited by
- (diff)
- 1:23 PM Ticket #8288 (List index out of range for UniProt DGAL_ECOLI) closed by
- fixed: If the accession code (P02927) maps to a different entry (P0AEE6), the …
- 11:20 AM Ticket #8291 (Crash in event loop after using XMAS) closed by
- can't reproduce
- 11:09 AM Ticket #8289 (Long atom spec crashes ChimeraX) closed by
- duplicate
- 5:07 AM Ticket #8292 (Adding DisplayVersion to registry for WIndows installation) created by
- […]
- 5:05 AM Ticket #8291 (Crash in event loop after using XMAS) created by
- […]
- 12:03 AM Ticket #8290 (Mol2 not creating metal-coordination pseudobonds) created by
- […]
Jan 10, 2023:
- 5:06 PM Ticket #8289 (Long atom spec crashes ChimeraX) created by
- […]
- 4:59 PM phenix-1-12-23 edited by
- (diff)
- 4:49 PM Ticket #8288 (List index out of range for UniProt DGAL_ECOLI) created by
- […]
- 4:45 PM Ticket #8287 (ChimeraX 1.4 says at startup 1.5 update available even though 1.5 is ...) created by
- […]
- 4:41 PM Ticket #8286 (ChimeraX Update Available does not show install instructions) created by
- […]
- 4:32 PM Ticket #8285 (Add option to uniprot open command to associate sequence with a ...) created by
- I'd like to be able to associate a uniprot sequence opened with the …
- 4:23 PM Ticket #8284 (Show fusion protein regions in sequence viewer) created by
- From ticket #8283: Actually, what I would REALLY like even better (or …
- 4:20 PM Ticket #8283 (RFE: improve chain info for fusion proteins (list multiple UniProt IDs)) closed by
- fixed: Ok, the Log chain table now shows all the uniprot identifiers for a …
- 2:29 PM Ticket #8283 (RFE: improve chain info for fusion proteins (list multiple UniProt IDs)) created by
- It would really help to understand fusion/insertion proteins if the …
- 2:21 PM phenix-1-12-23 created by
- 2:20 PM Features edited by
- (diff)
- 1:46 PM Ticket #8282 (Clipper: Cannot determine the correct value for the free reflections) created by
- […]
- 1:10 PM Ticket #8281 (Host name resolution failed getting toolshed info) closed by
- nonchimerax
- 12:29 PM 2023-1-12 edited by
- (diff)
- 12:29 PM Dev2022-1-16 created by
- 12:28 PM Dev2022-1-9 edited by
- (diff)
- 12:27 PM 2023-1-12 created by
- 12:26 PM DeveloperMeetings edited by
- (diff)
- 12:22 PM Ticket #8281 (Host name resolution failed getting toolshed info) created by
- […]
- 11:31 AM Ticket #8256 (Documentation links missing) reopened by
- The daily build continues to have bold text instead of links, likely …
- 10:52 AM Ticket #8279 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce
- 10:50 AM Ticket #8278 (Crash after opening session file) closed by
- can't reproduce
- 10:39 AM Ticket #8277 (Crash using registration dialog) closed by
- can't reproduce: Hi Sampathkumar, Thanks for reporting this problem. I recommend …
- 10:32 AM Ticket #8276 (Crash handling text input) closed by
- can't reproduce
- 6:59 AM Ticket #8280 (ISOLDE: 'close' after 'sim pause': 'AtomicStructure' object has no ...) created by
- […]
- 6:26 AM Ticket #8279 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 1:43 AM Ticket #8278 (Crash after opening session file) created by
- […]
Jan 9, 2023:
- 10:25 PM Ticket #8277 (Crash using registration dialog) created by
- […]
- 5:40 PM Ticket #8276 (Crash handling text input) created by
- […]
- 4:57 PM Dev2022-1-9 edited by
- (diff)
- 4:57 PM Dev2022-1-9 edited by
- (diff)
- 4:48 PM Ticket #8275 (Provide user agent information) created by
- Have web service requests from ChimeraX identify the requester via …
- 4:22 PM Dev2022-1-9 edited by
- (diff)
- 1:45 PM Ticket #8272 (Open command with a directory when a file was expected) closed by
- fixed: Not sure how this produced a traceback. For me (using "open …
- 11:36 AM Ticket #8256 (Documentation links missing) closed by
- fixed: I made the default bash for the chimera account /usr/local/bin/bash, …
- 10:03 AM Ticket #8153 (Atoms lost reading pdbe_bio file, atoms not grouped by model in mmCIF file) closed by
- fixed: "fixed" this by extending previous found PDB (NMR) model. You will …
- 7:20 AM Ticket #8274 (ArtiaX session save: Unknown class name 'MarkerSetPlus') created by
- […]
- 2:51 AM Ticket #8273 (Crash showing Rapid Access at startup) created by
- […]
Jan 6, 2023:
- 1:00 PM Ticket #8271 (Restore new session in old ChimeraX) closed by
- limitation
- 12:58 PM Ticket #8272 (Open command with a directory when a file was expected) created by
- […]
- 11:32 AM Dev2022-1-9 edited by
- (diff)
- 11:21 AM Ticket #8270 (Specific graphic bug) closed by
- not a bug: Yes. We made "close session" reset the graphical settings like …
- 11:15 AM Ticket #8268 (AlphaFold: sequence argument not recognized) closed by
- not a bug: Sequences of amino acids must be upper case letters. Yours are all …
- 11:15 AM Ticket #8271 (Restore new session in old ChimeraX) created by
- […]
- 11:13 AM Ticket #8267 (Segger: "import tables" failure) closed by
- fixed: Your old daily build of ChimeraX (September 2021) has a broken version …
- 10:14 AM Ticket #8270 (Specific graphic bug) created by
- […]
- 4:24 AM Ticket #8269 (ISOLDE: closing structure after paused sim: 'AtomicStructure' object ...) created by
- […]
Jan 5, 2023:
- 4:27 PM Ticket #8268 (AlphaFold: sequence argument not recognized) created by
- […]
- 2:18 PM NIAID2022 edited by
- (diff)
- 2:15 PM NIAID2022 edited by
- (diff)
- 2:07 PM NIAID2022 edited by
- (diff)
- 1:37 PM NIAID2022 edited by
- (diff)
- 1:06 PM Ticket #8267 (Segger: "import tables" failure) created by
- […]
- 12:55 PM Ticket #8264 (Can't run MacOS initially from command line) closed by
- nonchimerax: This is an Apple gatekeeper issue. I didn't see anyone trying to …
- 12:04 PM 2023-1-5 edited by
- (diff)
- 11:33 AM 2023-1-5 edited by
- (diff)
- 11:30 AM 2023-1-5 edited by
- (diff)
- 10:20 AM Ticket #8265 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce
- 10:00 AM Ticket #8262 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce
- 7:11 AM Ticket #8266 (Mac compiler error) created by
- […]
- 6:52 AM Ticket #8265 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 6:51 AM Ticket #8264 (Can't run MacOS initially from command line) created by
- […]
- 6:07 AM Ticket #8263 (Problems with combine command) created by
- […] combined_models_in_clipper_then_trimmed.jpg
Jan 4, 2023:
- 7:40 PM Ticket #8262 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 4:00 PM Ticket #8261 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: Hi Joseph, Thanks for reporting this problem. We believe it is fixed …
- 3:55 PM Ticket #8261 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 3:04 PM Ticket #8255 (Wrong orientation for defined axis) closed by
- fixed: fix: …
- 10:48 AM Ticket #8118 (Crash with segidChains true) closed by
- fixed: Some segment IDs were blank, resulting in null chain IDs. These …
- 9:56 AM Ticket #8259 (Crash fetching available Toolshed packages) closed by
- duplicate
- 9:55 AM Ticket #8258 (Crash fetching available Toolshed packages) closed by
- can't reproduce: Hi Uma, Please upgrade to the ChimeraX 1.5 release. If you then …
- 9:50 AM Ticket #8257 (MatchMaker: wrapped C/C++ object of type ChainMenuButton has been deleted) closed by
- duplicate
- 8:34 AM Ticket #8260 (Font sizes in daily build) created by
- […] Screenshot_20230104_163126.png
- 2:06 AM Ticket #8259 (Crash fetching available Toolshed packages) created by
- […]
- 2:01 AM Ticket #8258 (Crash fetching available Toolshed packages) created by
- […]
Jan 3, 2023:
- 10:32 PM Ticket #8257 (MatchMaker: wrapped C/C++ object of type ChainMenuButton has been deleted) created by
- […]
- 7:05 PM Ticket #8254 (Add record and speed buttons to volume series slider) closed by
- fixed: Done. Made volume series slider use same controls as other sliders …
- 3:31 PM Ticket #8256 (Documentation links missing) created by
- In the 1.5 release, clicking on Help→Programming Manual, then "API …
- 3:23 PM Ticket #8255 (Wrong orientation for defined axis) created by
- […] 6idf.pdb
- 2:38 PM Ticket #8254 (Add record and speed buttons to volume series slider) created by
- The volume series slider gui uses custom Qt code to put a 1/2 …
- 2:18 PM Ticket #8210 (Crash running two AlphaFold predictions in two ChimeraX instances) closed by
- nonchimerax
- 2:16 PM Ticket #8252 (glUniformMatrix4fv: invalid operation) closed by
- nonchimerax: OpenGL driver problem. Failed using OpenGL drawing status message.
- 2:13 PM Ticket #8250 (Crash in _adjust_surface_geometry) closed by
- limitation: Memory allocation failed when trying to subdivide volume surface …
- 2:01 PM Dev2022-1-9 created by
- 2:00 PM Dev2022-12-19 edited by
- (diff)
- 1:56 PM 2023-1-5 created by
- 1:55 PM DeveloperMeetings edited by
- (diff)
- 1:54 PM DeveloperMeetings2022 created by
- 1:52 PM GroupMeetings2022 created by
- 1:47 PM Ticket #6719 (Block trigger handlers) closed by
- fixed: Okay, incorporated this but named the context manager "blocked" and …
- 1:03 PM Ticket #8239 (Graphics crash, macOS 10.14.6, NVIDIA GeForce GTX 775M) closed by
- nonchimerax: Apple Nvidia graphics driver crash.
- 12:49 PM Ticket #8235 (Crash saving image in Pillow, ChimeraX 1.3, Linux 3.10) closed by
- nonchimerax: Crash reported several times before in Pillow saving image file, …
- 12:41 PM Ticket #8231 (Crash in bug reporter) closed by
- nonchimerax: ChimeraX was trying to show the Bug Reporter panel because the …
- 12:29 PM Ticket #8222 (Graphics crash, macOS 10.15.7, Intel HD Graphics 4000) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 11:33 AM Ticket #8253 (Slider no longer working smoothly) closed by
- not a bug: Ugh. My bad. Had just added a new GUI widget to adjust the controlling …
- 10:39 AM Ticket #8251 (No space left on device saving command history) closed by
- nonchimerax
- 10:33 AM Ticket #8249 (Crash in QMainWindow::removeDockWidget) closed by
- can't reproduce
- 10:29 AM Ticket #8248 (Crash in color chooser) closed by
- duplicate: duplicate of #7995
- 10:03 AM Ticket #8247 (Session open: function 'set_pbgroup_py_instance' not found) closed by
- duplicate: Hi Lingyi, Thanks for reporting this problem. It has been fixed in …
- 9:56 AM Ticket #8246 (Crash showing bug reporter) closed by
- can't reproduce: 1.2.4
- 9:54 AM Ticket #8245 (H-bonds: acc_phi_psi() takes 8 positional arguments but 9 were given) closed by
- not a bug: Hi Garima, I don't know how you generated this PDB file, but it has a …
- 9:32 AM Ticket #8253 (Slider no longer working smoothly) created by
- […]
- 6:54 AM Ticket #8252 (glUniformMatrix4fv: invalid operation) created by
- […]
- 12:22 AM Ticket #8251 (No space left on device saving command history) created by
- […]
Jan 2, 2023:
- 2:09 PM Ticket #8250 (Crash in _adjust_surface_geometry) created by
- […]
- 1:25 PM Ticket #8249 (Crash in QMainWindow::removeDockWidget) created by
- […]
- 6:40 AM Ticket #8248 (Crash in color chooser) created by
- […]
Jan 1, 2023:
- 5:26 PM Ticket #8247 (Session open: function 'set_pbgroup_py_instance' not found) created by
- […]
- 2:05 PM Ticket #8246 (Crash showing bug reporter) created by
- […]
Dec 31, 2022:
- 1:51 AM Ticket #8245 (H-bonds: acc_phi_psi() takes 8 positional arguments but 9 were given) created by
- […] stableL28.pdb
Dec 30, 2022:
- 1:42 PM ChangeLog edited by
- (diff)
- 9:13 AM Ticket #8244 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: Hi Laura, Thanks for reporting this problem. We believe it is fixed …
- 8:40 AM Ticket #8244 (Crash using File→Open on Windows and/or in return statement) created by
- […]
Dec 29, 2022:
- 5:36 PM Ticket #8170 (Files should use symmetry information if available) closed by
- fixed: Okay, I have added a commit to the still-outstanding pull request to …
- 4:52 PM Ticket #8243 (Re: [EXTERNAL] Re: Issue with installation of ISOLDE on macOS 11.7.2) closed by
- duplicate: Followup to #8240
- 4:51 PM Ticket #8241 (Re: [EXTERNAL] Re: Issue with installation of ISOLDE on macOS 11.7.2) closed by
- duplicate: Followup to #8240
- 3:10 PM Ticket #8237 (Restore new session in old ChimeraX) closed by
- limitation
- 2:24 PM Ticket #8243 (Re: [EXTERNAL] Re: Issue with installation of ISOLDE on macOS 11.7.2) created by
- […] [[Image(...)]]
- 1:51 PM Ticket #8242 (Re: [EXTERNAL] Re: Issue with installation of ISOLDE on macOS 11.7.2) created by
- […] [[Image(...)]]
- 12:16 PM Ticket #8241 (Re: [EXTERNAL] Re: Issue with installation of ISOLDE on macOS 11.7.2) created by
- […] [[Image(...)]]
- 9:31 AM Ticket #8240 (Re: [EXTERNAL] Re: Issue with installation of ISOLDE on macOS 11.7.2) created by
- […] [[Image(...)]]
Dec 28, 2022:
- 7:14 PM Ticket #8239 (Graphics crash, macOS 10.14.6, NVIDIA GeForce GTX 775M) created by
- […]
- 8:49 AM Ticket #8238 (User-installed bundles interfering with build) created by
- When doing "make install" from top ChimeraX directory: …
Dec 27, 2022:
- 11:25 PM Ticket #8237 (Restore new session in old ChimeraX) created by
- […]
- 8:25 PM Ticket #8230 (Wiggle tool not found after installation) closed by
- limitation: We had several bugs that prevented the Wiggle wheel (.whl file) from …
- 12:42 PM Ticket #8236 (Graphics hardware encountered an error and was reset) created by
- […]
- 11:41 AM Ticket #8226 (Unsupported scale factor (0.000000) detected on Display0) closed by
- limitation: Hi Kelvin, Thanks for that info. This isn't a problem with the …
- 9:50 AM Ticket #8234 (Crash using File→Open on Windows and/or in return statement) closed by
- duplicate: Same problem: upgrade to 1.5!
- 9:45 AM Ticket #8232 (Crash in event loop) closed by
- can't reproduce
- 9:41 AM Ticket #8225 (Wiggle tool not known after installation) closed by
- duplicate: Duplicate of #8230
- 9:39 AM Ticket #8229 (Wiggle tool not found after installation) closed by
- duplicate
- 9:37 AM Ticket #8228 (Wiggle tool not found after installation) closed by
- duplicate
- 9:35 AM Ticket #8227 (Wiggle tool not found after installation) closed by
- duplicate
Dec 26, 2022:
Dec 25, 2022:
- 1:24 AM Ticket #8234 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 1:20 AM Ticket #8233 (Crash using File→Open on Windows and/or in return statement) created by
- […]
Dec 24, 2022:
- 5:09 AM Ticket #8232 (Crash in event loop) created by
- […]
- 1:23 AM Ticket #8231 (Crash in bug reporter) created by
- […]
Dec 23, 2022:
- 7:57 PM Ticket #8230 (Wiggle tool not found after installation) created by
- […]
- 7:56 PM Ticket #8229 (Wiggle tool not found after installation) created by
- […]
- 7:41 PM Ticket #8228 (Wiggle tool not found after installation) created by
- […]
- 10:48 AM Ticket #8227 (Wiggle tool not found after installation) created by
- […]
- 8:16 AM Ticket #8226 (Unsupported scale factor (0.000000) detected on Display0) created by
- […]
- 8:00 AM Ticket #8225 (Wiggle tool not known after installation) created by
- […]
Dec 22, 2022:
- 1:28 PM Ticket #6617 (RFE: speed control on playback sliders) closed by
- fixed: Playback speed control available in next daily build.
- 1:15 PM ChangeLog edited by
- (diff)
- 9:40 AM Ticket #8224 (Crash in event loop) closed by
- can't reproduce
- 9:32 AM ChangeLog edited by
- (diff)
- 2:03 AM Ticket #8224 (Crash in event loop) created by
- […]
Dec 21, 2022:
- 6:33 PM Ticket #5887 (swapna) closed by
- fixed: swapna command available in next daily build
- 4:07 PM Ticket #7462 (Sequence Viewer context menu "blast" should provide more options) closed by
- fixed: Okay, it fills in the actual sequence instead of the alignment index …
- 2:27 PM Ticket #8208 (Session restore: rotamer model not child of parent) closed by
- fixed: The per-residue manager that tracks the active rotamers was creating …
- 10:34 AM Ticket #8223 (mmCIF: 'SaveOptionsWidget' object has no attribute 'compute_sheets') closed by
- duplicate: Hi Hong, Thanks for reporting this problem. It was fixed about 6 …
- 9:58 AM Ticket #8223 (mmCIF: 'SaveOptionsWidget' object has no attribute 'compute_sheets') created by
- […]
Dec 20, 2022:
- 5:32 PM Ticket #8219 (Failed to create NSOpenGLContext) closed by
- can't reproduce: The Qt window toolkit used by ChimeraX could not create an OpenGL …
- 5:21 PM DeveloperMeetings edited by
- (diff)
- 11:34 AM Ticket #8222 (Graphics crash, macOS 10.15.7, Intel HD Graphics 4000) created by
- […]
- 9:42 AM Ticket #8221 (Restore new session in old ChimeraX) closed by
- limitation
- 9:41 AM Ticket #8220 (Crash in event loop) closed by
- can't reproduce
Dec 19, 2022:
- 7:49 PM Ticket #8221 (Restore new session in old ChimeraX) created by
- […]
- 7:01 PM Ticket #8220 (Crash in event loop) created by
- […]
- 6:44 PM Ticket #8219 (Failed to create NSOpenGLContext) created by
- […]
- 3:00 PM Dev2022-12-19 created by
- 2:59 PM DeveloperMeetings edited by
- (diff)
- 2:42 PM Ticket #8196 (Volume disappears) closed by
- not a bug: I would imagine it would be best if specifying the contour level were …
- 1:34 PM Ticket #8218 (Bio assembly of 2JTN missing many atoms) created by
- Fetching pdbe_bio:2jtn yields a _file_ with 182 protein residues and …
- 1:24 PM Ticket #8198 (Index Error: list index out of range) closed by
- fixed: Changed cx_unified.py so that if rebonding produces a mess (atoms with …
- 12:02 PM Ticket #8207 (Fake Atom Error) closed by
- fixed: I have submitted a pull request on cx_unified.py that fixes this. …
- 11:03 AM Ticket #8217 (Open MRC file: Device not configured) closed by
- nonchimerax: Appears to be a operating file system read error. Here's what the C …
- 10:51 AM Ticket #8216 (Graphics crash, macOS 10.15.7, Intel HD Graphics 4000) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 10:48 AM Ticket #8217 (Open MRC file: Device not configured) created by
- […]
- 10:47 AM Ticket #8209 (Graphics crash, macOS 12.5.1, Intel Iris Graphics 6100) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 10:35 AM Ticket #8213 (Linux: QAccessibleTable::indexOfChild invalid child) closed by
- can't reproduce: Wait for a report on Qt6
- 7:36 AM Ticket #8216 (Graphics crash, macOS 10.15.7, Intel HD Graphics 4000) created by
- […]
Dec 18, 2022:
- 11:12 PM Ticket #8215 (Linux: QAccessibleTree::indexFromLogical: invalid index) created by
- […]
- 1:54 AM Ticket #8214 (ChimeraX deb compatible with Debian?) created by
- […] smime.p7s
Dec 16, 2022:
- 11:37 PM Ticket #8213 (Linux: QAccessibleTable::indexOfChild invalid child) created by
- […]
- 4:20 PM Ticket #8212 (Can two AlphaFold predictions be run at the same time with Colab Pro) created by
- Rayees Mattoo asked this on the chimerax user mailing list. I found …
- 12:25 PM Ticket #8211 (Error running second AlphaFold job before first completes) created by
- […]
- 12:17 PM Ticket #8210 (Crash running two AlphaFold predictions in two ChimeraX instances) created by
- […] crash_report.txt
- 12:06 PM Ticket #8209 (Graphics crash, macOS 12.5.1, Intel Iris Graphics 6100) created by
- […]
- 10:47 AM Ticket #8194 (chimerax.build_structure.bond.CreateBondError: Must specify two or ...) closed by
- fixed: Okay, I have submitted a pull request that "fixes" this problem. I …
- 10:10 AM Ticket #8208 (Session restore: rotamer model not child of parent) created by
- […]
- 10:06 AM Ticket #8207 (Fake Atom Error) created by
- […] 4hhb-max-hemoglobin.pdb …
- 9:49 AM Ticket #8205 (Abort from Qt) closed by
- can't reproduce
- 9:43 AM Ticket #8200 (Hydrogen bonded to atom that should not have hydrogens) closed by
- not a bug
- 6:56 AM Ticket #8206 (hbonds: acc_phi_psi() takes 8 positional arguments but 10 were given) created by
- […]
- 6:47 AM Ticket #8205 (Abort from Qt) created by
- […]
- 3:28 AM Ticket #8204 ('close' after paused simulation: 'AtomicStructure' object has no ...) created by
- […]
Dec 15, 2022:
- 4:51 PM Ticket #8199 (TypeError: acc_phi_psi() takes 8 positional arguments but 9 were given) closed by
- fixed: Okay, bundle now does not check H-bonds as part of hydrogen addition. …
- 4:24 PM 2022-12-15 edited by
- (diff)
- 3:22 PM Ticket #8201 (Save mouse undo info: models is None) closed by
- fixed: Appears that the user was using rotate selected models mouse mode, …
- 2:00 PM Ticket #8203 (Save mouse undo info: models is None) closed by
- duplicate
- 1:59 PM Ticket #8202 (Save mouse undo info: models is None) closed by
- duplicate
- 1:52 PM Ticket #8197 (mmCIF: 'SaveOptionsWidget' object has no attribute 'compute_sheets') closed by
- duplicate
- 1:41 PM Ticket #8191 (AttributeError: 'SeqCanvas' object has no attribute 'lead_block') closed by
- can't reproduce: I can't figure out a scenario where a redraw occurs before the initial …
- 11:57 AM Ticket #8203 (Save mouse undo info: models is None) created by
- […]
- 11:56 AM Ticket #8202 (Save mouse undo info: models is None) created by
- […]
- 11:56 AM Ticket #8201 (Save mouse undo info: models is None) created by
- […]
- 11:23 AM Ticket #8200 (Hydrogen bonded to atom that should not have hydrogens) created by
- […]
- 11:11 AM Ticket #8199 (TypeError: acc_phi_psi() takes 8 positional arguments but 9 were given) created by
- […]
- 11:07 AM Ticket #8198 (Index Error: list index out of range) created by
- […] HAG1.pdb
- 10:57 AM Ticket #8197 (mmCIF: 'SaveOptionsWidget' object has no attribute 'compute_sheets') created by
- […]
- 10:44 AM Ticket #8189 (TimeoutError fetching version information) closed by
- can't reproduce: Possibly due to the period of plato downtime yesterday.
- 10:39 AM Ticket #8196 (Volume disappears) created by
- […] emd_7037_0 (1).map
- 10:12 AM Ticket #8195 (raise ValueError("z_align endpoints must be distinct")) created by
- […] MARCpeptide.mol2
- 9:45 AM Ticket #8194 (chimerax.build_structure.bond.CreateBondError: Must specify two or ...) created by
- […]
- 9:11 AM Ticket #8193 (Ribbon structure missing) created by
- […] [[Image(...)]] [[Image(...)]]
- 2:19 AM Ticket #8192 (Update coordinates: RuntimeError: Release Object) created by
- […]
- 12:18 AM Ticket #8191 (AttributeError: 'SeqCanvas' object has no attribute 'lead_block') created by
- […]
Dec 14, 2022:
- 5:13 PM Ticket #8190 (Have web services use HTTPS proxy if set) created by
- Though cxservices supports a proxy_url, chimerax.webservices makes no …
- 3:54 PM Ticket #8189 (TimeoutError fetching version information) created by
- […]
- 1:25 PM Ticket #8180 (Restore new session in old ChimeraX) closed by
- limitation: Yes, you would need to upgrade your Mac or use another (newer) Mac to …
- 1:07 PM Ticket #8188 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 1:01 PM Ticket #8188 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 12:06 PM Ticket #8186 (Crash in event loop possibly saving large image) closed by
- can't reproduce: I'd guess it is an Apple Intel graphics driver crash. The image being …
- 12:04 PM Ticket #8184 (Crash in ses_surface_geometry) closed by
- duplicate: Tried to compute SES surface for 500,000 or more atoms and machine …
- 11:57 AM Ticket #8185 (Unable to open file for writing) closed by
- not a bug: User probably in non-writable folder
- 11:36 AM Ticket #7577 (Atomspec /A-B sometimes orders chains B,A breaking commands where ...) closed by
- fixed: I looked at fixing this "generically" (i.e. any /A-F atom spec comes …
- 11:31 AM Ticket #8187 (put flatpak build for the generic Linux release in daily builds) created by
- We currently create packages RHEL 8/9 and Ubuntu 20.04/22.04. That …
- 6:05 AM Ticket #8186 (Crash in event loop possibly saving large image) created by
- […]
- 3:04 AM Ticket #8185 (Unable to open file for writing) created by
- […]
- 1:47 AM Ticket #8184 (Crash in ses_surface_geometry) created by
- […]
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