Opened 3 years ago

Last modified 3 years ago

#8274 assigned defect

ArtiaX session save: Unknown class name 'MarkerSetPlus'

Reported by: rparaan@… Owned by: Utz Ermel
Priority: normal Milestone:
Component: Third Party Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        Linux-5.15.0-56-generic-x86_64-with-glibc2.35
ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC)
Description
Saving an artiaX session with cxs format.

Log:
UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> artiax start

Using preset: ArtiaX / Artiax Default  
Preset expands to these ChimeraX commands:

    
    
    set bgColor black
    lighting depthCue false
    camera ortho

  
Opened 022_Lam18ts2_seg.mrc as #1.1.1, grid size 510,720,188, pixel
16.6,16.6,16.6, shown at level 0.0011, step 1, values int16  

> artiax tomo #1.1.1 sliceDirection 0,0,1

> artiax view xy

Opened 021_Lam18ts2_seg.mrc as #1.1.2, grid size 510,720,188, pixel
16.6,16.6,16.6, shown at level 0.00105, step 1, values int16  

> artiax tomo #1.1.2 sliceDirection 0,0,1

> artiax view xy

> hide #!1.1.1 models

> show #!1.1.1 models

> hide #!1.1.2 models

> hide #!1.1.1 models

> show #!1.1.2 models

> show #!1.1.1 models

> volume #1.1.2 style surface

> volume #1.1.1 style surface

Opened 020_Lam18ts2_seg.mrc as #1.1.3, grid size 510,720,188, pixel
16.6,16.6,16.6, shown at level 0.001, step 1, values int16  

> artiax tomo #1.1.3 sliceDirection 0,0,1

> artiax view xy

> volume #1.1.3 style mesh

> volume #1.1.3 style surface

Opened 019_Lam18ts2_seg.mrc as #1.1.4, grid size 510,720,188, pixel
16.6,16.6,16.6, shown at level 0.00095, step 1, values int16  

> artiax tomo #1.1.4 sliceDirection 0,0,1

> artiax view xy

> volume #1.1.4 style surface

Opened 018_Lam18ts2_seg.mrc as #1.1.5, grid size 510,720,188, pixel
16.6,16.6,16.6, shown at level 0.0009, step 1, values int16  

> artiax tomo #1.1.5 sliceDirection 0,0,1

> artiax view xy

> volume #1.1.5 style surface

Opened 017_Lam18ts2_seg.mrc as #1.1.6, grid size 510,720,188, pixel
16.6,16.6,16.6, shown at level 0.00085, step 1, values int16  

> artiax tomo #1.1.6 sliceDirection 0,0,1

> artiax view xy

> volume #1.1.6 style surface

Opened 016_Lam18ts2_seg.mrc as #1.1.7, grid size 510,720,188, pixel
16.6,16.6,16.6, shown at level 0.0008, step 1, values int16  

> artiax tomo #1.1.7 sliceDirection 0,0,1

> artiax view xy

> volume #1.1.7 style surface

Opened 015_Lam18ts2_seg.mrc as #1.1.8, grid size 510,720,188, pixel
16.6,16.6,16.6, shown at level 0.00075, step 1, values int16  

> artiax tomo #1.1.8 sliceDirection 0,0,1

> artiax view xy

> volume #1.1.8 style surface

> hide #!1.1.8 models

> show #!1.1.8 models

Opened 014_Lam18ts2_seg.mrc as #1.1.9, grid size 510,720,188, pixel
16.6,16.6,16.6, shown at level 0.0007, step 1, values int16  

> artiax tomo #1.1.9 sliceDirection 0,0,1

> artiax view xy

> volume #1.1.9 style surface

> hide #!1.1.9 models

> show #!1.1.9 models

Opened 013_Lam18ts2_seg.mrc as #1.1.10, grid size 510,720,188, pixel
16.6,16.6,16.6, shown at level 0.00065, step 1, values int16  

> artiax tomo #1.1.10 sliceDirection 0,0,1

> artiax view xy

> volume #1.1.10 style surface

> hide #!1.1.10 models

> show #!1.1.10 models

> hide #!1.1.10 models

> show #!1.1.10 models

Opened 012_Lam18ts2_seg.mrc as #1.1.11, grid size 510,720,188, pixel
16.6,16.6,16.6, shown at level 0.0006, step 1, values int16  

> artiax tomo #1.1.11 sliceDirection 0,0,1

> artiax view xy

> volume #1.1.11 style surface

> hide #!1.1.11 models

> show #!1.1.11 models

> hide #!1.1.11 models

> show #!1.1.11 models

Opened 011_Lam18ts2_seg.mrc as #1.1.12, grid size 510,720,188, pixel
16.6,16.6,16.6, shown at level 0.00055, step 1, values int16  

> artiax tomo #1.1.12 sliceDirection 0,0,1

> artiax view xy

> volume #1.1.12 style surface

> hide #!1.1.12 models

> show #!1.1.12 models

Opened 010_Lam18ts2_seg.mrc as #1.1.13, grid size 510,720,188, pixel
16.6,16.6,16.6, shown at level 0.0005, step 1, values int16  

> artiax tomo #1.1.13 sliceDirection 0,0,1

> artiax view xy

> volume #1.1.13 style surface

> hide #!1.1.13 models

> show #!1.1.13 models

Opened 009_Lam18ts2_seg.mrc as #1.1.14, grid size 510,720,188, pixel
16.6,16.6,16.6, shown at level 0.00045, step 1, values int16  

> artiax tomo #1.1.14 sliceDirection 0,0,1

> artiax view xy

> volume #1.1.14 style surface

> hide #!1.1.14 models

> show #!1.1.14 models

Opened 008_Lam18ts2_seg.mrc as #1.1.15, grid size 510,720,188, pixel
16.6,16.6,16.6, shown at level 0.0004, step 1, values int16  

> artiax tomo #1.1.15 sliceDirection 0,0,1

> artiax view xy

> volume #1.1.15 style surface

> hide #!1.1.15 models

> show #!1.1.15 models

Opened 007_Lam18ts2_seg.mrc as #1.1.16, grid size 510,720,188, pixel
16.6,16.6,16.6, shown at level 0.00035, step 1, values int16  

> artiax tomo #1.1.16 sliceDirection 0,0,1

> artiax view xy

> volume #1.1.15

> hide #!1.1.16 models

> show #!1.1.16 models

> hide #!1.1.16 models

> show #!1.1.16 models

> hide #!1.1.16 models

> show #!1.1.16 models

> volume #1.1.16 style surface

> hide #!1.1.16 models

> show #!1.1.16 models

> hide #!1.1.16 models

> show #!1.1.16 models

Opened 006_Lam18ts2_seg.mrc as #1.1.17, grid size 510,720,188, pixel
16.6,16.6,16.6, shown at level 0.0003, step 1, values int16  

> artiax tomo #1.1.17 sliceDirection 0,0,1

> artiax view xy

> volume #1.1.17 style surface

> hide #!1.1.17 models

> show #!1.1.17 models

Opened 005_Lam18ts2_seg.mrc as #1.1.18, grid size 510,720,188, pixel
16.6,16.6,16.6, shown at level 0.00025, step 1, values int16  

> artiax tomo #1.1.18 sliceDirection 0,0,1

> artiax view xy

> volume #1.1.18 style surface

> hide #!1.1.18 models

> show #!1.1.18 models

Opened 004_Lam18ts2_seg.mrc as #1.1.19, grid size 510,720,188, pixel
16.6,16.6,16.6, shown at level 0.0002, step 1, values int16  

> artiax tomo #1.1.19 sliceDirection 0,0,1

> artiax view xy

> volume #1.1.19 style surface

> hide #!1.1.19 models

> show #!1.1.19 models

Opened 003_Lam18ts2_seg.mrc as #1.1.20, grid size 510,720,188, pixel
16.6,16.6,16.6, shown at level 0.00015, step 1, values int16  

> artiax tomo #1.1.20 sliceDirection 0,0,1

> artiax view xy

> volume #1.1.20 style surface

> hide #!1.1.20 models

> show #!1.1.20 models

Opened 002_Lam18ts2_seg.mrc as #1.1.21, grid size 510,720,188, pixel
16.6,16.6,16.6, shown at level 0.0001, step 1, values int16  

> artiax tomo #1.1.21 sliceDirection 0,0,1

> artiax view xy

> volume #1.1.21 style surface

> hide #!1.1.21 models

> show #!1.1.21 models

Opened 001_Lam18ts2_seg.mrc as #1.1.22, grid size 510,720,188, pixel
16.6,16.6,16.6, shown at level 5e-05, step 1, values int16  

> artiax tomo #1.1.22 sliceDirection 0,0,1

> artiax view xy

> volume #1.1.22 style surface

> hide #!1.1.22 models

> show #!1.1.22 models

> open
> /media/rezagull/8TB/Jun10/imod/Jun8grid2_wbpBin4deconv/particlepick3/maskcreate/Lam18ts2_Class1.txt.txt.tbl
> /media/rezagull/8TB/Jun10/imod/Jun8grid2_wbpBin4deconv/particlepick3/maskcreate/Lam18ts2_Class2.txt.txt.tbl
> /media/rezagull/8TB/Jun10/imod/Jun8grid2_wbpBin4deconv/particlepick3/maskcreate/Lam18ts2_Class3.txt.txt.tbl
> /media/rezagull/8TB/Jun10/imod/Jun8grid2_wbpBin4deconv/particlepick3/maskcreate/Lam18ts2_Class4.txt.txt.tbl
> /media/rezagull/8TB/Jun10/imod/Jun8grid2_wbpBin4deconv/particlepick3/maskcreate/Lam18ts2_G2Class1.txt.txt.tbl
> /media/rezagull/8TB/Jun10/imod/Jun8grid2_wbpBin4deconv/particlepick3/maskcreate/Lam18ts2_G2Class4.txt.txt.tbl
> format dynamo

Summary of feedback from opening
/media/rezagull/8TB/Jun10/imod/Jun8grid2_wbpBin4deconv/particlepick3/maskcreate/Lam18ts2_Class1.txt.txt.tbl  
---  
notes | 15  
['.arrow', '0', '0', '0', '15', '0', '0', '1.0', '4.0']  
  
Summary of feedback from opening
/media/rezagull/8TB/Jun10/imod/Jun8grid2_wbpBin4deconv/particlepick3/maskcreate/Lam18ts2_Class2.txt.txt.tbl  
---  
notes | 15  
['.arrow', '0', '0', '0', '15', '0', '0', '1.0', '4.0']  
  
Summary of feedback from opening
/media/rezagull/8TB/Jun10/imod/Jun8grid2_wbpBin4deconv/particlepick3/maskcreate/Lam18ts2_Class3.txt.txt.tbl  
---  
notes | 15  
['.arrow', '0', '0', '0', '15', '0', '0', '1.0', '4.0']  
  
Summary of feedback from opening
/media/rezagull/8TB/Jun10/imod/Jun8grid2_wbpBin4deconv/particlepick3/maskcreate/Lam18ts2_Class4.txt.txt.tbl  
---  
notes | 15  
['.arrow', '0', '0', '0', '15', '0', '0', '1.0', '4.0']  
  
Summary of feedback from opening
/media/rezagull/8TB/Jun10/imod/Jun8grid2_wbpBin4deconv/particlepick3/maskcreate/Lam18ts2_G2Class1.txt.txt.tbl  
---  
notes | 15  
['.arrow', '0', '0', '0', '15', '0', '0', '1.0', '4.0']  
  
Summary of feedback from opening
/media/rezagull/8TB/Jun10/imod/Jun8grid2_wbpBin4deconv/particlepick3/maskcreate/Lam18ts2_G2Class4.txt.txt.tbl  
---  
notes | 15  
['.arrow', '0', '0', '0', '15', '0', '0', '1.0', '4.0']  
  
Opened Particle list Lam18ts2_Class1.txt.txt.tbl with 31 particles.  
Opened Particle list Lam18ts2_Class2.txt.txt.tbl with 10 particles.  
Opened Particle list Lam18ts2_Class3.txt.txt.tbl with 7 particles.  
Opened Particle list Lam18ts2_Class4.txt.txt.tbl with 2 particles.  
Opened Particle list Lam18ts2_G2Class1.txt.txt.tbl with 3 particles.  
Opened Particle list Lam18ts2_G2Class4.txt.txt.tbl with 2 particles.  
set axis size 248.39999999999998  
248.39999999999998  
['.arrow', '0', '0', '0', '248.39999999999998', '0', '0', '16.56', '66.24']  

> artiax particles #1.2.1 originScaleFactor 16.56

> artiax view xy

set axis size 248.39999999999998  
248.39999999999998  
['.arrow', '0', '0', '0', '248.39999999999998', '0', '0', '16.56', '66.24']  

> artiax particles #1.2.2 originScaleFactor 16.56

> artiax view xy

set axis size 248.39999999999998  
248.39999999999998  
['.arrow', '0', '0', '0', '248.39999999999998', '0', '0', '16.56', '66.24']  

> artiax particles #1.2.3 originScaleFactor 16.56

> artiax view xy

set axis size 248.39999999999998  
248.39999999999998  
['.arrow', '0', '0', '0', '248.39999999999998', '0', '0', '16.56', '66.24']  

> artiax particles #1.2.4 originScaleFactor 16.56

> artiax view xy

set axis size 248.39999999999998  
248.39999999999998  
['.arrow', '0', '0', '0', '248.39999999999998', '0', '0', '16.56', '66.24']  

> artiax particles #1.2.5 originScaleFactor 16.56

> artiax view xy

set axis size 248.39999999999998  
248.39999999999998  
['.arrow', '0', '0', '0', '248.39999999999998', '0', '0', '16.56', '66.24']  

> artiax particles #1.2.6 originScaleFactor 16.56

> artiax view xy

> hide #!1.1.22 models

> hide #!1.1.21 models

> hide #!1.1.20 models

> show #!1.1.20 models

> hide #!1.1.19 models

> hide #!1.1.18 models

> show #!1.1.18 models

> hide #!1.1.18 models

> hide #!1.1.17 models

> show #!1.1.17 models

> hide #!1.1.17 models

> hide #!1.1.16 models

> show #!1.1.16 models

> hide #!1.1.16 models

> hide #!1.1.15 models

> show #!1.1.15 models

> hide #!1.1.14 models

> hide #!1.1.13 models

> hide #!1.1.12 models

> show #!1.1.12 models

> hide #!1.1.11 models

> show #!1.1.11 models

> hide #!1.1.11 models

> hide #!1.1.10 models

> show #!1.1.10 models

> hide #!1.1.10 models

> hide #!1.1.9 models

> hide #!1.1.8 models

> show #!1.1.8 models

> hide #!1.1.7 models

> hide #!1.1.6 models

> show #!1.1.6 models

> hide #!1.1.5 models

> hide #!1.1.4 models

> show #!1.1.4 models

> hide #!1.1.3 models

> show #!1.1.3 models

> hide #!1.1.2 models

> show #!1.1.2 models

> artiax hide axes

> artiax hide markers

> open
> /media/rezagull/8TB/Jun10/imod/Jun8grid2_wbpBin4deconv/particlepick3/maskcreate/Class1_average_828_masked_64pix.mrc

Opened Class1_average_828_masked_64pix.mrc as #2, grid size 64,64,64, pixel
8.28, shown at level 0.214, step 1, values float32  

> artiax attach #2 toParticleList #1.2.1

Opened Class1_average_828_masked_64pix.mrc as #1.2.1.1.1, grid size 64,64,64,
pixel 8.28, shown at level 0.214, step 1, values float32  

> volume #1.2.1.1.1 capFaces false

> artiax show #1.2.1 surfaces

> open
> /media/rezagull/8TB/Jun10/imod/Jun8grid2_wbpBin4deconv/particlepick3/maskcreate/Class2_average_828_fatmasked_64pix.mrc

Opened Class2_average_828_fatmasked_64pix.mrc as #2, grid size 64,64,64, pixel
8.28, shown at level 6.87e-05, step 1, values float32  

> artiax attach #2 toParticleList #1.2.2

Opened Class2_average_828_fatmasked_64pix.mrc as #1.2.2.1.1, grid size
64,64,64, pixel 8.28, shown at level 6.87e-05, step 1, values float32  

> volume #1.2.2.1.1 capFaces false

> artiax show #1.2.2 surfaces

> artiax particles #1.2.2 color 30,0,36,100

> artiax particles #1.2.2 surfaceLevel 0.40632

> artiax particles #1.2.2 surfaceLevel 0.47244

> artiax particles #1.2.2 surfaceLevel 0.31817

> artiax particles #1.2.2 surfaceLevel 0.23002

> open
> /media/rezagull/8TB/Jun10/imod/Jun8grid2_wbpBin4deconv/particlepick3/maskcreate/Class3_average_828_masked_64pix_dusted.mrc

Opened Class3_average_828_masked_64pix_dusted.mrc as #2, grid size 64,64,64,
pixel 8.28, shown at level 0.0657, step 1, values float32  

> artiax attach #2 toParticleList #1.2.3

Opened Class3_average_828_masked_64pix_dusted.mrc as #1.2.3.1.1, grid size
64,64,64, pixel 8.28, shown at level 0.0657, step 1, values float32  

> volume #1.2.3.1.1 capFaces false

> artiax show #1.2.3 surfaces

> artiax particles #1.2.3 color 100,80,60,100

> artiax particles #1.2.3 surfaceLevel 0.21053

> artiax particles #1.2.3 surfaceLevel 0.31025

> artiax particles #1.2.3 surfaceLevel 0.29212

> open
> /media/rezagull/8TB/Jun10/imod/Jun8grid2_wbpBin4deconv/particlepick3/maskcreate/Class4_average_828_masked_64pix.mrc

Opened Class4_average_828_masked_64pix.mrc as #2, grid size 64,64,64, pixel
8.28, shown at level 0.0185, step 1, values float32  

> artiax attach #2 toParticleList #1.2.4

Opened Class4_average_828_masked_64pix.mrc as #1.2.4.1.1, grid size 64,64,64,
pixel 8.28, shown at level 0.0185, step 1, values float32  

> volume #1.2.4.1.1 capFaces false

> artiax show #1.2.4 surfaces

> artiax particles #1.2.4 color 56,49,0,100

> artiax particles #1.2.4 surfaceLevel 0.36737

> open
> /media/rezagull/8TB/Jun10/imod/Jun8grid2_wbpBin4deconv/particlepick3/maskcreate/G2Class1_average_828_masked_64pix.mrc

Opened G2Class1_average_828_masked_64pix.mrc as #2, grid size 64,64,64, pixel
8.28, shown at level 0.246, step 1, values float32  

> artiax attach #2 toParticleList #1.2.5

Opened G2Class1_average_828_masked_64pix.mrc as #1.2.5.1.1, grid size
64,64,64, pixel 8.28, shown at level 0.246, step 1, values float32  

> volume #1.2.5.1.1 capFaces false

> artiax show #1.2.5 surfaces

> artiax particles #1.2.5 color 0,20,50,100

> open
> /media/rezagull/8TB/Jun10/imod/Jun8grid2_wbpBin4deconv/particlepick3/maskcreate/G2Class4_average_828_masked_64pix_dusted2.mrc

Opened G2Class4_average_828_masked_64pix_dusted2.mrc as #2, grid size
64,64,64, pixel 8.28, shown at level 0.0999, step 1, values float32  

> artiax attach #2 toParticleList #1.2.6

Opened G2Class4_average_828_masked_64pix_dusted2.mrc as #1.2.6.1.1, grid size
64,64,64, pixel 8.28, shown at level 0.0999, step 1, values float32  

> volume #1.2.6.1.1 capFaces false

> artiax show #1.2.6 surfaces

> artiax particles #1.2.6 color 26,40,0,100

> artiax particles #1.2.6 surfaceLevel 0.2876

> hide #!1.1.15 models

> show #!1.1.15 models

> hide #!1.1.12 models

> show #!1.1.12 models

> hide #!1.1.20 models

> show #!1.1.20 models

> hide #!1.1.6 models

> show #!1.1.6 models

> save
> /media/rezagull/8TB/Jun10/imod/Jun8grid2_wbpBin4deconv/particlepick3/maskcreate/Lam18ts2_trace.cxs
> includeMaps true

Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 262, in discovery  
self.processed[key] = self.process(obj, parents)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 299, in process  
return copy_state(data, convert=convert)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/state.py", line 219, in copy_state  
return _copy(data)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/state.py", line 204, in _copy  
items = [(_copy(k), _copy(v)) for k, v in data.items()]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/state.py", line 204, in <listcomp>  
items = [(_copy(k), _copy(v)) for k, v in data.items()]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/state.py", line 217, in _copy  
return convert(data)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 298, in convert  
return add_obj(obj, parents)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 270, in _add_obj  
uid = _UniqueName.from_obj(self.session, obj)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 142, in from_obj  
if obj_cls != bundle_info.get_class(obj_cls.__name__, session.logger):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/toolshed/info.py", line 476, in get_class  
return f(class_name)  
File "/home/rezagull/.local/share/ChimeraX/1.5/site-
packages/chimerax/artiax/__init__.py", line 37, in get_class  
raise ValueError("Unknown class name '%s'" % class_name)  
ValueError: Unknown class name 'MarkerSetPlus'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 899, in save  
session.save(output, version=version, include_maps=include_maps)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 625, in save  
mgr.discovery(self._state_containers)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 266, in discovery  
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))  
ValueError: error processing: 'attribute registration' ->
<chimerax.core.attributes.RegAttrManager object at 0x7f6ffccd0ee0> ->
<chimerax.atomic.molobject.Atom object at 0x7f6fc867fa40> 'M': Unknown class
name 'MarkerSetPlus'  
  
ValueError: error processing: 'attribute registration' -> -> 'M': Unknown
class name 'MarkerSetPlus'  
  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 266, in discovery  
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 262, in discovery  
self.processed[key] = self.process(obj, parents)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 299, in process  
return copy_state(data, convert=convert)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/state.py", line 219, in copy_state  
return _copy(data)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/state.py", line 204, in _copy  
items = [(_copy(k), _copy(v)) for k, v in data.items()]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/state.py", line 204, in <listcomp>  
items = [(_copy(k), _copy(v)) for k, v in data.items()]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/state.py", line 217, in _copy  
return convert(data)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 298, in convert  
return add_obj(obj, parents)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 270, in _add_obj  
uid = _UniqueName.from_obj(self.session, obj)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 142, in from_obj  
if obj_cls != bundle_info.get_class(obj_cls.__name__, session.logger):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/toolshed/info.py", line 476, in get_class  
return f(class_name)  
File "/home/rezagull/.local/share/ChimeraX/1.5/site-
packages/chimerax/artiax/__init__.py", line 37, in get_class  
raise ValueError("Unknown class name '%s'" % class_name)  
ValueError: Unknown class name 'MarkerSetPlus'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/save_command/dialog.py", line 116, in <lambda>  
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/save_command/dialog.py", line 127, in show_save_file_dialog  
_dlg.display(session, **kw)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/save_command/dialog.py", line 51, in display  
run(session, cmd)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/commands/run.py", line 38, in run  
results = command.run(text, log=log, return_json=return_json)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/save_command/cmd.py", line 75, in cmd_save  
Command(session, registry=registry).run(provider_cmd_text, log=log)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/save_command/cmd.py", line 90, in provider_save  
saver_info.save(session, path, **provider_kw)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core_formats/__init__.py", line 84, in save  
return cxs_save(session, path, **kw)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 899, in save  
session.save(output, version=version, include_maps=include_maps)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 625, in save  
mgr.discovery(self._state_containers)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 266, in discovery  
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))  
ValueError: error processing: 'attribute registration' ->
<chimerax.core.attributes.RegAttrManager object at 0x7f6ffccd0ee0> ->
<chimerax.atomic.molobject.Atom object at 0x7f6fc867fa40> 'M': Unknown class
name 'MarkerSetPlus'  
  
ValueError: error processing: 'attribute registration' -> -> 'M': Unknown
class name 'MarkerSetPlus'  
  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 266, in discovery  
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))  
  
See log for complete Python traceback.  
  

> open help:user/artiax_index.html

Opened help:user/artiax_index.html  

> save
> /media/rezagull/8TB/Jun10/imod/Jun8grid2_wbpBin4deconv/particlepick3/maskcreate/test.cxs
> includeMaps true

Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 262, in discovery  
self.processed[key] = self.process(obj, parents)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 299, in process  
return copy_state(data, convert=convert)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/state.py", line 219, in copy_state  
return _copy(data)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/state.py", line 204, in _copy  
items = [(_copy(k), _copy(v)) for k, v in data.items()]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/state.py", line 204, in <listcomp>  
items = [(_copy(k), _copy(v)) for k, v in data.items()]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/state.py", line 217, in _copy  
return convert(data)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 298, in convert  
return add_obj(obj, parents)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 270, in _add_obj  
uid = _UniqueName.from_obj(self.session, obj)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 142, in from_obj  
if obj_cls != bundle_info.get_class(obj_cls.__name__, session.logger):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/toolshed/info.py", line 476, in get_class  
return f(class_name)  
File "/home/rezagull/.local/share/ChimeraX/1.5/site-
packages/chimerax/artiax/__init__.py", line 37, in get_class  
raise ValueError("Unknown class name '%s'" % class_name)  
ValueError: Unknown class name 'MarkerSetPlus'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 899, in save  
session.save(output, version=version, include_maps=include_maps)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 625, in save  
mgr.discovery(self._state_containers)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 266, in discovery  
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))  
ValueError: error processing: 'attribute registration' ->
<chimerax.core.attributes.RegAttrManager object at 0x7f6ffccd0ee0> ->
<chimerax.atomic.molobject.Atom object at 0x7f6fc867fa40> 'M': Unknown class
name 'MarkerSetPlus'  
  
ValueError: error processing: 'attribute registration' -> -> 'M': Unknown
class name 'MarkerSetPlus'  
  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 266, in discovery  
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 262, in discovery  
self.processed[key] = self.process(obj, parents)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 299, in process  
return copy_state(data, convert=convert)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/state.py", line 219, in copy_state  
return _copy(data)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/state.py", line 204, in _copy  
items = [(_copy(k), _copy(v)) for k, v in data.items()]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/state.py", line 204, in <listcomp>  
items = [(_copy(k), _copy(v)) for k, v in data.items()]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/state.py", line 217, in _copy  
return convert(data)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 298, in convert  
return add_obj(obj, parents)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 270, in _add_obj  
uid = _UniqueName.from_obj(self.session, obj)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 142, in from_obj  
if obj_cls != bundle_info.get_class(obj_cls.__name__, session.logger):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/toolshed/info.py", line 476, in get_class  
return f(class_name)  
File "/home/rezagull/.local/share/ChimeraX/1.5/site-
packages/chimerax/artiax/__init__.py", line 37, in get_class  
raise ValueError("Unknown class name '%s'" % class_name)  
ValueError: Unknown class name 'MarkerSetPlus'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/save_command/dialog.py", line 116, in <lambda>  
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/save_command/dialog.py", line 127, in show_save_file_dialog  
_dlg.display(session, **kw)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/save_command/dialog.py", line 51, in display  
run(session, cmd)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/commands/run.py", line 38, in run  
results = command.run(text, log=log, return_json=return_json)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/save_command/cmd.py", line 75, in cmd_save  
Command(session, registry=registry).run(provider_cmd_text, log=log)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/save_command/cmd.py", line 90, in provider_save  
saver_info.save(session, path, **provider_kw)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core_formats/__init__.py", line 84, in save  
return cxs_save(session, path, **kw)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 899, in save  
session.save(output, version=version, include_maps=include_maps)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 625, in save  
mgr.discovery(self._state_containers)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 266, in discovery  
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))  
ValueError: error processing: 'attribute registration' ->
<chimerax.core.attributes.RegAttrManager object at 0x7f6ffccd0ee0> ->
<chimerax.atomic.molobject.Atom object at 0x7f6fc867fa40> 'M': Unknown class
name 'MarkerSetPlus'  
  
ValueError: error processing: 'attribute registration' -> -> 'M': Unknown
class name 'MarkerSetPlus'  
  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 266, in discovery  
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 525.60.13
OpenGL renderer: NVIDIA RTX A6000/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.9.11
Locale: en_US.UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: xcb

XDG_SESSION_TYPE=x11
DESKTOP_SESSION=ubuntu
XDG_SESSION_DESKTOP=ubuntu
XDG_CURRENT_DESKTOP=ubuntu:GNOME
DISPLAY=:1
Manufacturer: System manufacturer
Model: System Product Name
OS: Ubuntu 22.04 Jammy Jellyfish
Architecture: 64bit ELF
Virtual Machine: none
CPU: 36 Intel(R) Core(TM) i9-10980XE CPU @ 3.00GHz
Cache Size: 25344 KB
Memory:
	               total        used        free      shared  buff/cache   available
	Mem:           251Gi        45Gi       9.5Gi       417Mi       196Gi       202Gi
	Swap:             0B          0B          0B

Graphics:
	1a:00.0 VGA compatible controller [0300]: NVIDIA Corporation GA102GL [RTX A6000] [10de:2230] (rev a1)	
	Subsystem: NVIDIA Corporation GA102GL [RTX A6000] [10de:1459]	
	Kernel driver in use: nvidia

Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    asttokens: 2.1.0
    Babel: 2.11.0
    backcall: 0.2.0
    blockdiag: 3.0.0
    build: 0.8.0
    certifi: 2022.9.24
    cftime: 1.6.2
    charset-normalizer: 2.1.1
    ChimeraX-AddCharge: 1.4
    ChimeraX-AddH: 2.2.1
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.6
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-ArtiaX: 0.3
    ChimeraX-Atomic: 1.41.5
    ChimeraX-AtomicLibrary: 8.0.3
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.7.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.1
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.2
    ChimeraX-CommandLine: 1.2.4
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.5
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.3
    ChimeraX-DockPrep: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-LinuxSupport: 1.0.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.1
    ChimeraX-MatchMaker: 2.0.9
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.8
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.6
    ChimeraX-ModelPanel: 1.3.6
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.1
    ChimeraX-MouseModes: 1.1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.9.1
    ChimeraX-PDB: 2.6.8
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.7.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.1.3
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.24.3
    ChimeraX-uniprot: 2.2.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.1.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.1
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.5
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.32
    debugpy: 1.6.4
    decorator: 5.1.1
    distro: 1.7.0
    docutils: 0.19
    entrypoints: 0.4
    executing: 1.2.0
    filelock: 3.7.1
    fonttools: 4.38.0
    funcparserlib: 1.0.1
    geomdl: 5.3.1
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.33
    imagecodecs: 2022.7.31
    imagesize: 1.4.1
    importlib-metadata: 5.1.0
    ipykernel: 6.15.3
    ipython: 8.4.0
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.1.2
    jupyter-client: 7.3.4
    jupyter-core: 5.1.0
    kiwisolver: 1.4.4
    line-profiler: 3.5.1
    lxml: 4.9.1
    lz4: 4.0.2
    MarkupSafe: 2.1.1
    matplotlib: 3.5.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.0
    networkx: 2.8.5
    numexpr: 2.8.4
    numpy: 1.23.1
    openvr: 1.23.701
    packaging: 21.3
    pandas: 1.5.2
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.2.0
    pip: 22.2.2
    pkginfo: 1.8.3
    platformdirs: 2.5.4
    prompt-toolkit: 3.0.33
    psutil: 5.9.1
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.12.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2022.6
    pyzmq: 24.0.1
    qtconsole: 5.3.1
    QtPy: 2.3.0
    RandomWords: 0.4.0
    requests: 2.28.1
    scipy: 1.9.0
    setuptools: 65.1.1
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 5.1.1
    sphinx-autodoc-typehints: 1.19.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    starfile: 0.4.11
    superqt: 0.4.1
    tables: 3.7.0
    tifffile: 2022.7.31
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.2
    traitlets: 5.3.0
    typing-extensions: 4.4.0
    urllib3: 1.26.13
    wcwidth: 0.2.5
    webcolors: 1.12
    wheel: 0.37.1
    wheel-filename: 1.4.1
    zipp: 3.11.0

Change History (1)

comment:1 by pett, 3 years ago

Component: UnassignedThird Party
Owner: set to Utz Ermel
Platform: all
Project: ChimeraX
Status: newassigned
Summary: ChimeraX bug report submissionArtiaX session save: Unknown class name 'MarkerSetPlus'

Reported by Reza Paraan

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