The following bug report has been submitted:
Platform: Windows-10-10.0.22000
ChimeraX Version: 1.3rc202111182158 (2021-11-18 21:58:36 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
Updating list of available bundles failed: [Errno 11001] getaddrinfo failed
UCSF ChimeraX version: 1.3rc202111182158 (2021-11-18)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3rc202111182158\bin\lib\site-
packages\urllib3\connection.py", line 174, in _new_conn
conn = connection.create_connection(
File "C:\Program Files\ChimeraX 1.3rc202111182158\bin\lib\site-
packages\urllib3\util\connection.py", line 73, in create_connection
for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
File "C:\Program Files\ChimeraX 1.3rc202111182158\bin\lib\socket.py", line
953, in getaddrinfo
for res in _socket.getaddrinfo(host, port, family, type, proto, flags):
socket.gaierror: [Errno 11001] getaddrinfo failed
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3rc202111182158\bin\lib\site-
packages\urllib3\connectionpool.py", line 699, in urlopen
httplib_response = self._make_request(
File "C:\Program Files\ChimeraX 1.3rc202111182158\bin\lib\site-
packages\urllib3\connectionpool.py", line 394, in _make_request
conn.request(method, url, **httplib_request_kw)
File "C:\Program Files\ChimeraX 1.3rc202111182158\bin\lib\site-
packages\urllib3\connection.py", line 239, in request
super(HTTPConnection, self).request(method, url, body=body, headers=headers)
File "C:\Program Files\ChimeraX 1.3rc202111182158\bin\lib\http\client.py",
line 1257, in request
self._send_request(method, url, body, headers, encode_chunked)
File "C:\Program Files\ChimeraX 1.3rc202111182158\bin\lib\http\client.py",
line 1303, in _send_request
self.endheaders(body, encode_chunked=encode_chunked)
File "C:\Program Files\ChimeraX 1.3rc202111182158\bin\lib\http\client.py",
line 1252, in endheaders
self._send_output(message_body, encode_chunked=encode_chunked)
File "C:\Program Files\ChimeraX 1.3rc202111182158\bin\lib\http\client.py",
line 1012, in _send_output
self.send(msg)
File "C:\Program Files\ChimeraX 1.3rc202111182158\bin\lib\http\client.py",
line 952, in send
self.connect()
File "C:\Program Files\ChimeraX 1.3rc202111182158\bin\lib\site-
packages\urllib3\connection.py", line 205, in connect
conn = self._new_conn()
File "C:\Program Files\ChimeraX 1.3rc202111182158\bin\lib\site-
packages\urllib3\connection.py", line 186, in _new_conn
raise NewConnectionError(
urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPConnection
object at 0x000001C58F9A1850>: Failed to establish a new connection: [Errno
11001] getaddrinfo failed
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3rc202111182158\bin\lib\site-
packages\chimerax\ui\gui.py", line 676, in customEvent
func(*args, **kw)
File "C:\Program Files\ChimeraX 1.3rc202111182158\bin\lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 1502, in on_finish
versions = self.result.get()
File "C:\Program Files\ChimeraX
1.3rc202111182158\bin\lib\multiprocessing\pool.py", line 771, in get
raise self._value
File "C:\Program Files\ChimeraX
1.3rc202111182158\bin\lib\multiprocessing\pool.py", line 125, in worker
result = (True, func(*args, **kwds))
File "C:\Program Files\ChimeraX 1.3rc202111182158\bin\lib\site-
packages\cxservices\api_client.py", line 148, in __call_api
response_data = self.request(
File "C:\Program Files\ChimeraX 1.3rc202111182158\bin\lib\site-
packages\cxservices\api_client.py", line 338, in request
return self.rest_client.GET(url,
File "C:\Program Files\ChimeraX 1.3rc202111182158\bin\lib\site-
packages\cxservices\rest.py", line 233, in GET
return self.request("GET", url,
File "C:\Program Files\ChimeraX 1.3rc202111182158\bin\lib\site-
packages\cxservices\rest.py", line 206, in request
r = self.pool_manager.request(method, url,
File "C:\Program Files\ChimeraX 1.3rc202111182158\bin\lib\site-
packages\urllib3\request.py", line 74, in request
return self.request_encode_url(
File "C:\Program Files\ChimeraX 1.3rc202111182158\bin\lib\site-
packages\urllib3\request.py", line 96, in request_encode_url
return self.urlopen(method, url, **extra_kw)
File "C:\Program Files\ChimeraX 1.3rc202111182158\bin\lib\site-
packages\urllib3\poolmanager.py", line 375, in urlopen
response = conn.urlopen(method, u.request_uri, **kw)
File "C:\Program Files\ChimeraX 1.3rc202111182158\bin\lib\site-
packages\urllib3\connectionpool.py", line 783, in urlopen
return self.urlopen(
File "C:\Program Files\ChimeraX 1.3rc202111182158\bin\lib\site-
packages\urllib3\connectionpool.py", line 783, in urlopen
return self.urlopen(
File "C:\Program Files\ChimeraX 1.3rc202111182158\bin\lib\site-
packages\urllib3\connectionpool.py", line 783, in urlopen
return self.urlopen(
File "C:\Program Files\ChimeraX 1.3rc202111182158\bin\lib\site-
packages\urllib3\connectionpool.py", line 755, in urlopen
retries = retries.increment(
File "C:\Program Files\ChimeraX 1.3rc202111182158\bin\lib\site-
packages\urllib3\util\retry.py", line 574, in increment
raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError:
HTTPConnectionPool(host='webservices.rbvi.ucsf.edu', port=80): Max retries
exceeded with url:
/cxservices/api/v1//chimerax/newer?uuid=22e80901-e652-5933-8cba-7ba57b6d8f84&OS=windows&OSVersion=10.0.22000&ChimeraXVersion=1.3rc202111182158
(Caused by NewConnectionError('<urllib3.connection.HTTPConnection object at
0x000001C58F9A1850>: Failed to establish a new connection: [Errno 11001]
getaddrinfo failed'))
urllib3.exceptions.MaxRetryError:
HTTPConnectionPool(host='webservices.rbvi.ucsf.edu', port=80): Max retries
exceeded with url:
/cxservices/api/v1//chimerax/newer?uuid=22e80901-e652-5933-8cba-7ba57b6d8f84&OS=windows&OSVersion=10.0.22000&ChimeraXVersion=1.3rc202111182158
(Caused by NewConnectionError(': Failed to establish a new connection: [Errno
11001] getaddrinfo failed'))
File "C:\Program Files\ChimeraX 1.3rc202111182158\bin\lib\site-
packages\urllib3\util\retry.py", line 574, in increment
raise MaxRetryError(_pool, url, error or ResponseError(cause))
See log for complete Python traceback.
> open "C:\Users\Punita\Documents\phenix\FFAR1_Phenix\FFAR1_Final
> Refinements_Publication\FinalFinalModel_Map\DHA_2.9\postprocess_FFAR_042222_job108.mrc"
> format mrc
Opened postprocess_FFAR_042222_job108.mrc as #1, grid size 200,200,200, pixel
1.08, shown at level 0.0165, step 1, values float32
OpenGL version: 3.3.0 NVIDIA 517.00
OpenGL renderer: NVIDIA GeForce GTX 1650/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Dell Inc.
Model: XPS 15 7590
OS: Microsoft Windows 11 Home (Build 22000)
Memory: 16,893,956,096
MaxProcessMemory: 137,438,953,344
CPU: 12 Intel(R) Core(TM) i7-9750H CPU @ 2.60GHz
OSLanguage: en-US
Locale: ('en_US', 'cp1252')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2021.10.8
cftime: 1.5.1.1
charset-normalizer: 2.0.7
ChimeraX-AddCharge: 1.2
ChimeraX-AddH: 2.1.10
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.30.2
ChimeraX-AtomicLibrary: 4.1.5
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5
ChimeraX-CommandLine: 1.1.5
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.3rc202111182158
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.4
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.4
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.4
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.2.6
ChimeraX-ModelPanel: 1.2.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.7
ChimeraX-PDB: 2.6.5
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.13.7
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
comtypes: 1.1.10
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.24
decorator: 5.1.0
docutils: 0.17.1
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 3.6.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.21
imagecodecs: 2021.4.28
imagesize: 1.3.0
ipykernel: 5.5.5
ipython: 7.23.1
ipython-genutils: 0.2.0
jedi: 0.18.0
Jinja2: 3.0.1
jupyter-client: 6.1.12
jupyter-core: 4.9.1
kiwisolver: 1.3.2
lxml: 4.6.3
lz4: 3.1.3
MarkupSafe: 2.0.1
matplotlib: 3.4.3
matplotlib-inline: 0.1.3
msgpack: 1.0.2
netCDF4: 1.5.7
networkx: 2.6.3
numexpr: 2.7.3
numpy: 1.21.2
openvr: 1.16.801
packaging: 21.3
ParmEd: 3.2.0
parso: 0.8.2
pickleshare: 0.7.5
Pillow: 8.3.2
pip: 21.2.4
pkginfo: 1.7.1
prompt-toolkit: 3.0.22
psutil: 5.8.0
pycollada: 0.7.1
pydicom: 2.1.2
Pygments: 2.10.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.6
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.2
pytz: 2021.3
pywin32: 228
pyzmq: 22.3.0
qtconsole: 5.1.1
QtPy: 1.11.2
RandomWords: 0.3.0
requests: 2.26.0
scipy: 1.7.1
setuptools: 57.5.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.2.0
sphinx-autodoc-typehints: 1.12.0
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2021.4.8
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.7
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.0
wheel-filename: 1.3.0
WMI: 1.5.1