Timeline



Feb 13, 2019:

4:25 PM EricsSOW edited by pett
(diff)
3:54 PM Ticket #1701 (Soft lighting bug after undisplayed opacity change) closed by Tom Goddard
fixed: Fixed. Add transparency tracking code to catch volume surface …
2:45 PM Ticket #1702 (Depth cue color sometimes mismatches background color) closed by Tom Goddard
fixed: Fixed. Depth cue color was not matching preference setting background.
2:35 PM EricsSOW edited by pett
(diff)
2:34 PM EricsSOW edited by pett
(diff)
2:31 PM EricsSOW edited by pett
(diff)
2:29 PM EricsSOW created by pett
2:03 PM Ticket #1705 ("make build-from-scratch" fails) closed by Greg Couch
fixed: Fixed by not guessing where ChimeraX.app is.
1:54 PM 2019-02-07 edited by pett
(diff)
1:41 PM Ticket #1706 (make clean fails: missing subdirectory tut_gui) closed by pett
fixed: tut_gui became tut_tool_html and tut_tool_qt
1:12 PM Ticket #1706 (make clean fails: missing subdirectory tut_gui) created by goddard@…
[…]
1:01 PM Ticket #1705 ("make build-from-scratch" fails) created by goddard@…
[…] build1.out
11:44 AM Ticket #1703 (Session save: No bundle information for ...) closed by pett
duplicate: Duplicate of #1698
11:31 AM Ticket #1704 (Implement full selection cascade) created by pett
Possibly including Tristan's suggestion of a glycosylation level (#1700)
11:15 AM Ticket #1699 (ISOLDE installation: UnicodeDecodeError) closed by pett
duplicate: This is a known bug affecting ChimeraX 0.8. You can find instructions …
10:40 AM Ticket #1703 (Session save: No bundle information for ...) created by chimerax-bug-report@…
[…]
8:45 AM Ticket #1702 (Depth cue color sometimes mismatches background color) created by olibclarke@…
[…]
7:45 AM Ticket #1701 (Soft lighting bug after undisplayed opacity change) created by olibclarke@…
[…] chimerax_lighting_bug.mov
6:04 AM Ticket #1700 (Selection "promotion" in glycans etc.) created by Tristan Croll
Referring to the selection manipulation behaviour using the keyboard …

Feb 12, 2019:

4:36 PM Ticket #1622 (Need a method to clear atom's anisotropic B-factors) closed by pett
fixed: Okay, this works now for collections too. --Eric
4:17 PM Ticket #1699 (ISOLDE installation: UnicodeDecodeError) created by pradeep.hiriyur.nagaraj@…
[…]
3:46 PM Ticket #1687 (Bogus "incompatible matrix" error) closed by pett
fixed: The temporary "domain sequences" that matchmaker was creating to do …
12:36 PM Ticket #1697 (Crash while copying text) closed by pett
can't reproduce: HI Jozef, Thanks for getting back to me so quickly. This seems like …
11:11 AM Ticket #1693 (Session save: No bundle information for ...) closed by pett
duplicate: duplicate of #1698

Feb 11, 2019:

11:46 PM Ticket #1698 (Session save: No bundle information for ...) created by j.r.lewandowski@…
[…]
11:30 PM Ticket #1697 (Crash while copying text) created by j.r.lewandowski@…
[…]
7:17 PM Ticket #1690 (couldn't restore recently saved session with DICOM data) closed by Tom Goddard
fixed: Fixed.
6:59 PM Ticket #1694 (error trying to use 3D projection mode with dicom CT + SEG models) closed by Tom Goddard
fixed: Fixed. 3d projection mode was not handling blending.
5:34 PM Ticket #1696 (Large multi-image ImageJ tiff file is incorrectly read in as a single plane) created by matt.akamatsu@…
Begin forwarded message: From: Matthew Akamatsu Subject: Re: …
4:26 PM Ticket #1695 (Switching to stereo camera crashes) closed by Tom Goddard
fixed: Fixed. When OpenGL context was switched to stereo, VAO (vertex array …
3:01 PM vizvault_stereo edited by Elaine Meng
(diff)
2:58 PM vizvault_stereo edited by Elaine Meng
(diff)
2:56 PM vizvault_stereo edited by Elaine Meng
(diff)
2:55 PM vizvault_stereo created by Elaine Meng
2:44 PM WikiStart edited by Elaine Meng
(diff)
2:43 PM WikiStart edited by Elaine Meng
(diff)
12:57 PM Ticket #1695 (Switching to stereo camera crashes) created by Tom Goddard
[…]
11:51 AM Ticket #1694 (error trying to use 3D projection mode with dicom CT + SEG models) created by Elaine Meng
[…] 4-24533-segs.zip
11:09 AM Ticket #1693 (Session save: No bundle information for ...) created by chimerax-bug-report@…
[…]
11:03 AM Ticket #1691 (Silhouettes + model hiding → blank graphics window) closed by Tom Goddard
duplicate: This was fixed a month ago. We advise people to use the ChimeraX …
10:53 AM Ticket #1692 (Allow volume zone invert true when newMap false) created by a.rohou@…
Begin forwarded message: From: Alexis Rohou Subject: [chimerax-users] …
10:01 AM Ticket #1691 (Silhouettes + model hiding → blank graphics window) created by a.rohou@…
[…] 190211_ChimeraX_bugreport_silhouetteTrue.jpg
9:24 AM Ticket #1690 (couldn't restore recently saved session with DICOM data) created by Elaine Meng
[…] middle.cxs
2:20 AM Ticket #1689 (ChimeraX bug report submission) closed by Tristan Croll
duplicate: This is a known bug affecting ChimeraX 0.8. You can find instructions …

Feb 9, 2019:

6:47 AM Ticket #1689 (ChimeraX bug report submission) created by jaraque@…
[…]

Feb 8, 2019:

5:39 PM Ticket #1688 (Qt crash (resizing window?)) created by skliegman@…
[…]
1:13 PM Ticket #1687 (Bogus "incompatible matrix" error) created by Elaine Meng
[…]
3:36 AM Ticket #1686 ('ChimeraX -m pip install mdtraj' causes GUI to repeatedly flash up) created by Tristan Croll
(unrelated: the installation fails because some of the source was …

Feb 7, 2019:

6:07 PM Ticket #1685 (Core requirement mismatch) created by pgleiman@…
[…]
3:12 PM 2019-02-07 created by Conrad Huang
2:04 PM DeveloperMeetings edited by Conrad Huang
(diff)
11:33 AM Ticket #1622 (Need a method to clear atom's anisotropic B-factors) reopened by pett
10:57 AM Ticket #1675 (ChimeraX MacOS does not launch) closed by Conrad Huang
nonchimerax: Google search results suggest that the problem arose with a Mojave …
6:12 AM Ticket #1684 (BZip2 missing in Linux daily builds) created by Tristan Croll
[…] Probably because the CentOS 7 Singularity recipe is missing …
5:26 AM Ticket #1683 (Can't install OpenEye from pip) created by Tristan Croll
Installs fine in a regular Python 3.7 virtualenv, but if I attempt to …

Feb 6, 2019:

3:56 PM Ticket #1680 (Vseries save: No module named 'chimerax.core.commands.parse') closed by Tom Goddard
fixed: Fixed in tonight's builds. The vseries save command when given two or …
9:10 AM Ticket #1682 (Expose mmcif template functions to Python) created by Tristan Croll
The C++ code in bundles/mmcif/mmcif_cpp covers the job of pulling .cif …
12:24 AM Ticket #1680 (Vseries save: No module named 'chimerax.core.commands.parse') created by matt.akamatsu@…
[…]

Feb 5, 2019:

10:11 AM Ticket #1678 (ChimeraX bug report submission) closed by Conrad Huang
fixed: If you are not using ISOLDE, please try using a newer daily build of …
9:47 AM Ticket #1679 (symbol lookup error: /lib64/libgtk-3.so.0: undefined symbol: ...) closed by Tristan Croll
not a bug: Never mind - this was entirely my fault. I was running ChimeraX from a …
8:50 AM Ticket #1465 (KeyError saving mmCIF) closed by Greg Couch
duplicate: Duplicate of #1548
7:10 AM Ticket #1679 (symbol lookup error: /lib64/libgtk-3.so.0: undefined symbol: ...) created by Tristan Croll
I just noticed using last week's nightly rpm build (in a CentOS 7 …
2:58 AM Ticket #1678 (ChimeraX bug report submission) created by chimerax-bug-report@…
[…]

Feb 4, 2019:

3:32 PM Ticket #1677 (Logged commands are missing required quotation marks) closed by Greg Couch
fixed: Fixed. This needs to be handled on a per-annotation basis, since …
2:19 PM Ticket #1677 (Logged commands are missing required quotation marks) created by goddard@…
[…]
11:46 AM Ticket #1676 (Library linking failure after ISOLDE install) closed by pett
duplicate: Duplicate of #1672
7:59 AM Ticket #1676 (Library linking failure after ISOLDE install) created by chimerax-bug-report@…
[…]
4:25 AM Ticket #1675 (ChimeraX MacOS does not launch) created by kelvin.lau@…
[…]

Feb 3, 2019:

4:40 PM Ticket #1548 (KeyError while writing mmCIF) closed by Greg Couch
fixed: Bug was due to code that guessed the polymer sequence. The last …

Feb 2, 2019:

11:41 AM Ticket #1548 (KeyError while writing mmCIF) reopened by Greg Couch
Fix broken other parts of ChimeraX.

Feb 1, 2019:

1:38 PM Ticket #1674 (mmCIF reading crash) closed by pett
duplicate: Mistakenly clicked 'Submit' button
1:14 PM Ticket #1674 (mmCIF reading crash) created by pett
[…]
11:40 AM Ticket #1673 (Linux flavor ABI incompatibility) created by tic20@…
Relevant part of traceback below. The offending line in rota.cpp is …
11:29 AM Ticket #1668 (Unexpected None data given to NamedView.restore_snapshot()) closed by pett
duplicate: Same underlying problem as #1660
5:41 AM Ticket #1672 (Library linking failure after ISOLDE install) created by arnaud.basle@…
[…]
5:39 AM Ticket #1671 (Permission denied installing Clipper) created by arnaud.basle@…
[…]
5:38 AM Ticket #1670 (about.html missing on Linux) created by arnaud.basle@…
[…]
2:11 AM Ticket #1669 (Toolshed updating list of tools: 'list' object has no attribute 'split') created by hubert.santuz@…
[…]

Jan 31, 2019:

6:16 PM Ticket #1548 (KeyError while writing mmCIF) closed by Greg Couch
fixed: So this one is fixed. Out of curiosity, where are these NMR mmCIF …
5:46 PM 2019-01-31 edited by Greg Couch
(diff)
3:02 PM 2019-01-31 edited by Conrad Huang
(diff)
2:52 PM 2019-01-31 created by Conrad Huang
2:12 PM Ticket #1668 (Unexpected None data given to NamedView.restore_snapshot()) created by chimerax-bug-report@…
[…]
2:07 PM DeveloperMeetings edited by Conrad Huang
(diff)
11:54 AM ChangeLog edited by Elaine Meng
(diff)
10:39 AM Ticket #1667 (Session-restore failure: KeyError: 'rotations') closed by pett
fixed: Hi Shiwei, This problem was fixed on December 17th, so if you …
7:53 AM Ticket #1667 (Session-restore failure: KeyError: 'rotations') created by shiwei.zhu@…
[…]

Jan 30, 2019:

4:03 PM Ticket #1665 (Bundles from other builds being used) closed by pett
duplicate: duplicate of #1642
4:02 PM Ticket #1664 (Bundles from other builds being used) closed by pett
duplicate: duplicate of #1642
3:14 PM Ticket #1666 (bundle_info.xml DataFormat classifier needs allow_directory option) created by Tom Goddard
Need ChimeraXClassifier DataFormat allow_directory option …
2:32 PM Ticket #1665 (Bundles from other builds being used) created by chimerax-bug-report@…
[…]
2:28 PM Ticket #1664 (Bundles from other builds being used) created by chimerax-bug-report@…
[…]

Jan 29, 2019:

5:58 PM Ticket #1662 (DICOM key error bitsAllocated) closed by Tom Goddard
fixed: I made the DICOM reader warn about and ignore these dicom files it …
1:20 PM Ticket #1659 (Crash due to NULL sseq.structure pointer) closed by pett
duplicate: Need session file to reproduce
12:10 PM Ticket #1663 (DICOM value error 50 times but 2 found) closed by Tom Goddard
fixed: When opening a partial time series (files present for only 2 of 50 …
11:24 AM Ticket #1663 (DICOM value error 50 times but 2 found) created by Elaine Meng
Narrowed down the mouse data to at least one example, attached as zip …
11:10 AM Ticket #1662 (DICOM key error bitsAllocated) created by Elaine Meng
Narrowed down the problem with the head/neck study. Within the …
9:41 AM Ticket #1661 (Support adding state managers from bundles) created by Conrad Huang
Session state managers are useful mechanisms that provide a …

Jan 28, 2019:

6:38 PM Ticket #1660 (Unexpected None data given to StructureSeq.restore_snapshot()) created by ze_li@…
[…]
6:31 PM Ticket #1657 (DICOM singular matrix error) closed by Tom Goddard
nonchimerax: This DICOM data set has 88 planes, 87 of which are spaced at 4 mm in z …
6:28 PM Ticket #1659 (Crash due to NULL sseq.structure pointer) created by ze_li@…
[…]
6:15 PM Ticket #1656 (Structure sequence returns NULL structure pointer) closed by pett
can't reproduce
5:37 PM Ticket #1658 (Structure sequence returns NULL structure pointer) created by ze_li@…
[…]
4:11 PM Ticket #1657 (DICOM singular matrix error) created by Elaine Meng
Narrowed this one down to a subset of the QIN LUNG CT data. Zip file …
3:58 PM Ticket #1656 (Structure sequence returns NULL structure pointer) created by ze_li@…
[…]
2:53 PM Ticket #1655 (Command history problems) created by olibclarke@…
[…]
2:46 PM Ticket #1654 (Constant-size pivot indicator) created by olibclarke@…
[…] Screen Shot 2019-01-28 at 5.45.21 PM.png
2:19 PM Ticket #1653 (Allow clip command distances specified from center of rotation) created by olibclarke@…
Current clip command specifies distances from center of bounding box. …
2:16 PM Ticket #1652 (Allow depth cue on unlit meshes) created by olibclarke@…
Oliver wants depth cue on unlit meshes. Begin forwarded message: …
11:51 AM Ticket #1651 (sseq_structure probably returning NULL) closed by pett
can't reproduce
11:47 AM Ticket #1651 (sseq_structure probably returning NULL) created by chimerax-bug-report@…
[…]
10:47 AM Ticket #1648 (draw() takes 3 positional arguments but 4 were given) closed by Tom Goddard
duplicate: Fixed months ago.
3:43 AM Ticket #1650 (IncludeDir argument in bundle_info.xml no longer recognises $HOME) created by Tristan Croll
Just updating Clipper/ISOLDE to use the ChimeraX daily builds. Up …
2:36 AM Ticket #1648 (draw() takes 3 positional arguments but 4 were given) created by chimerax-bug-report@…
[…]
2:26 AM Ticket #1647 (UnicodeDecodeError installing ISOLDE) closed by Tristan Croll
duplicate: This is a known issue in the ChimeraX 0.8 release. Instructions on how …

Jan 27, 2019:

3:06 AM Ticket #1647 (UnicodeDecodeError installing ISOLDE) created by didny1@…
[…]

Jan 26, 2019:

2:44 PM Ticket #1646 (Clip broken + depth cueing question) created by olibclarke@…
[…] Screenshot 2017-05-26 10.23.18.png
9:15 AM Ticket #1645 (Ribbons could be smoother) created by olibclarke@…
[…] comparsion.jpg

Jan 25, 2019:

3:04 PM ChangeLog edited by pett
(diff)
3:04 PM ChangeLog edited by pett
(diff)
12:19 PM Ticket #1643 (FastVolumeSurface class not restorable) created by n.keep@…
[…]
11:32 AM Ticket #1642 (Bundles from other builds being used) created by goddard@…
[…]

Jan 24, 2019:

3:22 PM Ticket #1641 (ChimeraX does not start: KeyError: 'ChimeraX_Clipper') closed by Tom Goddard
fixed: Working now in a build from scratch.
3:05 PM 2019-01-24 edited by Conrad Huang
(diff)
3:03 PM 2019-01-24 created by Conrad Huang
2:03 PM DeveloperMeetings edited by Conrad Huang
(diff)
1:13 PM Ticket #1641 (ChimeraX does not start: KeyError: 'ChimeraX_Clipper') created by Tom Goddard
ChimeraX 0.8 will start but newer ChimeraX builds exit at start up -- …
12:34 PM Ticket #1638 (ISOLDE installation: UnicodeDecodeError) closed by Tristan Croll
duplicate: I've added instructions on how to work around the Unicode bug at …
11:49 AM Ticket #1639 (ISOLDE installation: UnicodeDecodeError) closed by pett
fixed
11:21 AM ChangeLog edited by Elaine Meng
(diff)
7:35 AM Ticket #1640 ('toolshed install isolde reinstall true' attempts to install wrong ...) created by Tristan Croll
Just trying to find new ways to break things (and attempt to replicate …
7:01 AM Ticket #1639 (ISOLDE installation: UnicodeDecodeError) created by n.keep@…
[…]
6:08 AM Ticket #1638 (ISOLDE installation: UnicodeDecodeError) created by d.houldershaw@…
[…]
4:29 AM Ticket #1637 (ISOLDE installation: UnicodeDecodeError) created by n.keep@…
[…]
3:27 AM Ticket #1636 (Installation problems with openSuSE Leap 15.0) created by michael.weyand@…
[…]
2:49 AM Ticket #1635 (Replace PyQt5 with PySide2) created by Tristan Croll
We currently require a paid commercial license for PyQt5 to be able to …
2:02 AM Ticket #1634 (Inconsistent ToolShed download statistics) created by Tristan Croll
On the ToolShed download statistics page for ISOLDE, there's a weird …

Jan 23, 2019:

4:52 PM Ticket #1610 (AddH: acc_phi_psi() takes 8 positional arguments but 9 were given) closed by pett
duplicate: This is because of the mmCIF reader messing up the connectivity of …
2:42 PM Ticket #1629 (KeyError: 'ChimeraX_ISOLDE') closed by Conrad Huang
fixed: Fixed by same changes as #1628.
2:12 PM Ticket #1626 (Traceback and no redraw after dragging Volume Viewer "solid" display ...) closed by Elaine Meng
fixed
1:35 PM Ticket #1628 (ChimeraX fails to start after failed bundle install) closed by Conrad Huang
fixed: Fixed in b3d8cadc2. If cache data is not consistent with …
12:29 PM Ticket #642 (OpenMM bug) closed by Greg Couch
fixed: The daily builds are now using OpenMM 7.3.
11:58 AM Ticket #1632 (TypeError: __getattr__() missing 1 required positional argument: ...) closed by Greg Couch
fixed: Problem was that attr_registration.py defined a __getattr__ function …
11:08 AM Ticket #1582 (Volume Viewer deleted twice(?)) closed by Conrad Huang
can't reproduce: Tried several things but could not reproduce. We can catch the …
11:05 AM Ticket #1633 (Depict thermal ellipsoids) created by tic20@…
Same functionality as original Chimera
11:05 AM Ticket #1632 (TypeError: __getattr__() missing 1 required positional argument: ...) created by Conrad Huang
[…]
10:42 AM Ticket #1587 (Registration internal error) closed by Conrad Huang
fixed: Fixed in 49e0c4149. When registration server is …
10:39 AM Ticket #1630 (ChimeraX bug report submission) closed by Tristan Croll
not a bug
8:25 AM Ticket #1631 (UnicodeDecodeError during ISOLDE install) created by dilipk@…
[…]
4:30 AM Ticket #1630 (ChimeraX bug report submission) created by n.keep@…
[…]
4:28 AM Ticket #1629 (KeyError: 'ChimeraX_ISOLDE') created by chimerax-bug-report@…
[…]
12:08 AM Ticket #1628 (ChimeraX fails to start after failed bundle install) created by tic20@…
[…]

Jan 22, 2019:

6:01 PM Ticket #1627 (Startup error: KeyError: 'ChimeraX_ISOLDE') created by goddard@…
[…]
4:50 PM Ticket #1611 (AddH: list index out of range in roomiest()) closed by pett
fixed: Fixed. AddH now treats CYS similarly to HIS (i.e. as "unspecified" …
12:34 PM Ticket #1623 (Session restore: msgpack: max_ext_len exceeded) closed by Greg Couch
duplicate: Duplicate of #1616. Please try a newer daily build, dated 2019-01-17 …
12:15 PM Ticket #1626 (Traceback and no redraw after dragging Volume Viewer "solid" display ...) created by Elaine Meng
[…]
6:30 AM Ticket #1624 (Wrong ChimeraX version when installing ISOLDE 1.0b1) closed by Tristan Croll
nonchimerax: ISOLDE 1.0b1 requires the ChimeraX 0.6 release. If you wait a day or …

Jan 21, 2019:

6:43 PM FAI edited by Greg Couch
(diff)
5:59 PM Ticket #1624 (Wrong ChimeraX version when installing ISOLDE 1.0b1) created by loerchs@…
[…]
2:44 PM FAI edited by Greg Couch
(diff)

Jan 19, 2019:

4:07 AM Ticket #1623 (Session restore: msgpack: max_ext_len exceeded) created by abeer.singh@…
[…]

Jan 18, 2019:

4:37 PM Ticket #1622 (Need a method to clear atom's anisotropic B-factors) closed by pett
fixed: a.aniso_u6 = None will now clear the aniso_u info.
4:01 PM Ticket #1621 (map planes slider doesn't go away when changed to non-plane with command) closed by Tom Goddard
fixed: Fixed. Changing a volume to show full region with a command now hides …
12:48 PM Ticket #1605 (Residue.atoms yields corrupted array after residue deleted) closed by pett
fixed: The cost of the check seems to be negligible, so I have added it. …
12:25 PM Ticket #1256 (Module can't find shared lib) closed by Conrad Huang
fixed: Appears to be fixed (after many iterations of bundle_builder.py).
6:49 AM Ticket #1622 (Need a method to clear atom's anisotropic B-factors) created by Tristan Croll
Not to set the entries to zero, but to clear the Atom.aniso_u field …

Jan 17, 2019:

3:17 PM Ticket #1621 (map planes slider doesn't go away when changed to non-plane with command) created by Elaine Meng
If I open a map file that initially displays as a single plane with a …
3:11 PM Ticket #1620 ("move planes" mouse mode behavior with multiple maps) created by Elaine Meng
I don't know if this is a request for enhancement or a bug report, but …
2:59 PM Ticket #1617 (Blast Protein lower case chain) closed by Conrad Huang
fixed: Fixed in 4c653742c. Blast database for PDB from NCBI uses …
1:38 PM Ticket #1618 (Session restore: msgpack: max_ext_len exceeded) closed by Greg Couch
duplicate: Duplicate of #1616. Please send me a session file so I can test if …
11:58 AM Ticket #1619 (draw_xor_rectangle: draw() takes 3 positional arguments but 4 were given) closed by Tom Goddard
duplicate: Fixed months ago. Bug reported in Sept ChimeraX build.
10:05 AM Ticket #1619 (draw_xor_rectangle: draw() takes 3 positional arguments but 4 were given) created by chimerax-bug-report@…
[…]
12:49 AM Ticket #1618 (Session restore: msgpack: max_ext_len exceeded) created by sitins07@…
[…]

Jan 16, 2019:

11:54 PM FAI edited by Greg Couch
(diff)
5:28 PM Ticket #1617 (Blast Protein lower case chain) created by pett
Blast results have lower case chains reported as a doubling of the …
4:40 PM Ticket #1613 (windowing mouse mode swap horizontal/vertical behavior) closed by Tom Goddard
fixed: Fixed. Made vertical drag do leveling and horizontal do windowing. …
4:26 PM Ticket #1615 (Drag select: glDrawBuffer(GL_FRONT): invalid operation) closed by Tom Goddard
fixed: Fixed. Drawing code pushed the silhouette framebuffer and then an …
3:49 PM Ticket #1616 (Session restore: msgpack: max_ext_len exceeded) created by gghanim@…
[…]
3:45 PM Ticket #1615 (Drag select: glDrawBuffer(GL_FRONT): invalid operation) created by pett
[…]
3:39 PM Ticket #1608 (Problem reshowing volume series) closed by Tom Goddard
can't reproduce: Not sure how you removed the threshold. Perhaps there is a bug where …
2:56 PM Ticket #1121 (Erroneous bonding at RNA chain break in PDB 5an9) closed by pett
fixed: Apparently fixed by other previous changes/fixes.
10:52 AM ChangeLog edited by pett
(diff)
9:33 AM Ticket #1614 (RFE: visual (text) feedback of window/threshold values) created by Elaine Meng
This could apply to both the graphics window in desktop use and in VR …
9:29 AM Ticket #1613 (windowing mouse mode swap horizontal/vertical behavior) created by Elaine Meng
Looks like both Horos and 3DSlicer windowing mouse modes use vertical …

Jan 15, 2019:

10:32 PM Ticket #1612 (DICOM unsupported value type) closed by Tom Goddard
fixed: Ok, can read this segmentation DICOM file now. This took more work …
1:35 PM Ticket #1540 (AddH: no lone pairs on acceptor) closed by pett
fixed: Fixed by implementing tau test for aniline as an acceptor so that it …
12:41 PM Ticket #1612 (DICOM unsupported value type) created by Elaine Meng
[…] 11-06-2014-1-96508.zip
11:34 AM Ticket #1561 (Bundle build system does not recompile changed C++ files) closed by Tom Goddard
fixed: Machine this bug occurred on had numpy 1.14.3 in ChimeraX. Updating …
7:55 AM Ticket #1611 (AddH: list index out of range in roomiest()) created by lpravda@…
[…]
7:55 AM Ticket #1610 (AddH: acc_phi_psi() takes 8 positional arguments but 9 were given) created by lpravda@…
[…]
3:50 AM Ticket #1608 (Problem reshowing volume series) created by sitins07@…
[…]
1:48 AM Ticket #1607 (Reading DCD: UnicodeDecodeError: unexpected end of data) created by girl_toon@…
[…]

Jan 14, 2019:

6:00 PM Ticket #1606 (Singular matrix reading DICOM time series) closed by Tom Goddard
fixed: Error was caused by reading a DICOM time series which is not yet …
5:03 PM Ticket #1124 (Remove bot traffic from Toolshed download stats?) closed by Conrad Huang
fixed: I've added a robots.txt that forbids mining all cxtoolshed pages.
10:41 AM Ticket #1606 (Singular matrix reading DICOM time series) created by Elaine Meng
[…] 10-01-2010-339068828-GBMintracranial-631.2.zip
4:42 AM Ticket #1605 (Residue.atoms yields corrupted array after residue deleted) created by Tristan Croll
If I have a model open: […]
Note: See TracTimeline for information about the timeline view.