ChimeraX bug report submission

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.17134
ChimeraX Version: 0.9 (2019-01-03)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Messages  
---  
note | Traceback (most recent call last):  
  
File "D:\ChimeraX\bin\lib\site-packages\chimerax\core\toolshed\\__init__.py",
line 338, in __init__  
  
self.init_available_from_cache(logger)  
  
File "D:\ChimeraX\bin\lib\site-packages\chimerax\core\toolshed\\__init__.py",
line 449, in init_available_from_cache  
  
abc.load_from_cache()  
  
File "D:\ChimeraX\bin\lib\site-packages\chimerax\core\toolshed\available.py",
line 64, in load_from_cache  
  
b = _build_bundle(d)  
  
File "D:\ChimeraX\bin\lib\site-packages\chimerax\core\toolshed\available.py",
line 249, in _build_bundle  
  
keywords = _extract_extra_keywords(keywords)  
  
File "D:\ChimeraX\bin\lib\site-packages\chimerax\core\toolshed\installed.py",
line 270, in _extract_extra_keywords  
  
all_kwds = [k.strip() for k in kwds.split(',')]  
  
AttributeError: 'list' object has no attribute 'split'  
  
  
  
  
UCSF ChimeraX version: 0.9 (2019-01-03)  
How to cite UCSF ChimeraX  

> open "D:\\\OneDrive - uk-erlangen.de\\\Ephys\\\HEK nav15\\\Updated
summaries\\\Prints\\\Figure 6 Models\\\hNav15B1 for figures.cxs" format
session

opened ChimeraX session  

> open "D:/OneDrive - uk-erlangen.de/Ephys/HEK nav15/Updated
summaries/Prints/Figure 6 Models/hNav1.5B3.BL00030017_renumber.pdb"

Chain information for hNav1.5B3.BL00030017_renumber.pdb #2  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Downloading bundle ChimeraX_Stringdb-0.1-py3-none-any.whl  
Traceback (most recent call last):  
File "D:\ChimeraX\bin\lib\site-packages\chimerax\ui\widgets\htmlview.py", line
384, in download_finished  
session=self.session)  
File "D:\ChimeraX\bin\lib\site-packages\chimerax\core\toolshed\\__init__.py",
line 605, in install_bundle  
results = self._pip_install(bundle, per_user=per_user, reinstall=reinstall)  
File "D:\ChimeraX\bin\lib\site-packages\chimerax\core\toolshed\\__init__.py",
line 899, in _pip_install  
results = self._run_pip(command)  
File "D:\ChimeraX\bin\lib\site-packages\chimerax\core\toolshed\\__init__.py",
line 927, in _run_pip  
result = cp.stdout.decode("utf-8")  
UnicodeDecodeError: 'utf-8' codec can't decode byte 0xa0 in position 46:
invalid start byte  
  
UnicodeDecodeError: 'utf-8' codec can't decode byte 0xa0 in position 46:
invalid start byte  
  
File "D:\ChimeraX\bin\lib\site-packages\chimerax\core\toolshed\\__init__.py",
line 927, in _run_pip  
result = cp.stdout.decode("utf-8")  
  
See log for complete Python traceback.  
  
Downloading bundle ChimeraX_Atom_Search-1.0-cp36-cp36m-win_amd64.whl  
unloading module chimerax.atomic.search  
Traceback (most recent call last):  
File "D:\ChimeraX\bin\lib\site-packages\chimerax\ui\widgets\htmlview.py", line
384, in download_finished  
session=self.session)  
File "D:\ChimeraX\bin\lib\site-packages\chimerax\core\toolshed\\__init__.py",
line 605, in install_bundle  
results = self._pip_install(bundle, per_user=per_user, reinstall=reinstall)  
File "D:\ChimeraX\bin\lib\site-packages\chimerax\core\toolshed\\__init__.py",
line 899, in _pip_install  
results = self._run_pip(command)  
File "D:\ChimeraX\bin\lib\site-packages\chimerax\core\toolshed\\__init__.py",
line 927, in _run_pip  
result = cp.stdout.decode("utf-8")  
UnicodeDecodeError: 'utf-8' codec can't decode byte 0xa0 in position 46:
invalid start byte  
  
UnicodeDecodeError: 'utf-8' codec can't decode byte 0xa0 in position 46:
invalid start byte  
  
File "D:\ChimeraX\bin\lib\site-packages\chimerax\core\toolshed\\__init__.py",
line 927, in _run_pip  
result = cp.stdout.decode("utf-8")  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 - Build 25.20.100.6519
OpenGL renderer: Intel(R) HD Graphics 505
OpenGL vendor: Intel

[Conrad Huang]

If you are not using ISOLDE, please try using a newer daily build of ChimeraX 0.9. The fix for this bug should already be in place.