Opened 7 years ago
Closed 7 years ago
#1669 closed defect (fixed)
Toolshed updating list of tools: 'list' object has no attribute 'split'
| Reported by: | Owned by: | Conrad Huang | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Tool Shed | Version: | |
| Keywords: | Cc: | shiwei.zhu@… | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Linux-4.4.0-141-generic-x86_64-with-debian-stretch-sid
ChimeraX Version: 0.8 (2018-12-17)
Description
At startup, I have a python error message in the "Startup Messages" :
NOTE: Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/toolshed/__init__.py", line 338, in __init__
self.init_available_from_cache(logger)
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/toolshed/__init__.py", line 445, in
init_available_from_cache
abc.load_from_cache()
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/toolshed/available.py", line 61, in load_from_cache
b = _build_bundle(d)
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/toolshed/available.py", line 242, in _build_bundle
keywords = _extract_extra_keywords(keywords)
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/toolshed/installed.py", line 270, in
_extract_extra_keywords
all_kwds = [k.strip() for k in kwds.split(',')]
AttributeError: 'list' object has no attribute 'split'
BUG: Error preloading available bundles:
AttributeError: 'list' object has no attribute 'split'
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/toolshed/installed.py", line 270, in
_extract_extra_keywords
all_kwds = [k.strip() for k in kwds.split(',')]
_See log for complete Python traceback._
Log:
Startup Messages
---
note | Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/toolshed/__init__.py", line 338, in __init__
self.init_available_from_cache(logger)
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/toolshed/__init__.py", line 445, in
init_available_from_cache
abc.load_from_cache()
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/toolshed/available.py", line 61, in load_from_cache
b = _build_bundle(d)
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/toolshed/available.py", line 242, in _build_bundle
keywords = _extract_extra_keywords(keywords)
File "/usr/lib/ucsf-chimerax/lib/python3.6/site-
packages/chimerax/core/toolshed/installed.py", line 270, in
_extract_extra_keywords
all_kwds = [k.strip() for k in kwds.split(',')]
AttributeError: 'list' object has no attribute 'split'
UCSF ChimeraX version: 0.8 (2018-12-17)
How to cite UCSF ChimeraX
> toolshed show Log
> help help:user/tools/cli.html#history
OpenGL version: 3.3.0 NVIDIA 387.26
OpenGL renderer: GeForce GTX 1080/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Linux Ubuntu 16.04
Change History (4)
comment:1 by , 7 years ago
| Component: | Unassigned → Tool Shed |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Toolshed updating list of tools: 'list' object has no attribute 'split' |
comment:2 by , 7 years ago
| Cc: | added |
|---|
comment:4 by , 7 years ago
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
Fixed by 9c80cac968. Daily builds after January 24, 2019 should have the fix.
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Happens with slightly older ChimeraX versions