![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 7 years ago
Closed 7 years ago
#1659 closed defect (duplicate)
Crash due to NULL sseq.structure pointer
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Sequence | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description (last modified by )
The following bug report has been submitted:
Platform: Darwin-17.3.0-x86_64-i386-64bit
ChimeraX Version: 0.9 (2019-01-26)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [16230]
Path: /Applications/ChimeraX.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 0.9.0 (0.9.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [16230]
User ID: 504
Date/Time: 2019-01-28 21:27:56.321 -0500
OS Version: Mac OS X 10.13.2 (17C88)
Report Version: 12
Anonymous UUID: 79720F29-30C3-4144-005E-7415A59D77B8
Sleep/Wake UUID: 80AF8DCE-0A6B-4048-AE5D-B3DE643E6C20
Time Awake Since Boot: 380000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000010
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0x10:
-->
__TEXT 00000001002f6000-00000001002f7000 [ 4K] r-x/rwx SM=COW [/Applications/ChimeraX.app/Contents/MacOS/ChimeraX]
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff7d9ede3e __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff7db2c150 pthread_kill + 333
2 libsystem_c.dylib 0x00007fff7d8fc8fe raise + 26
3 libsystem_platform.dylib 0x00007fff7db1ff5a _sigtramp + 26
4 ??? 000000000000000000 0 + 0
5 libmolc.dylib 0x00000001185e9c59 sseq_structure + 57
6 _ctypes.cpython-37m-darwin.so 0x0000000106dfbebf ffi_call_unix64 + 79
7 _ctypes.cpython-37m-darwin.so 0x0000000106dfc71a ffi_call + 858
8 _ctypes.cpython-37m-darwin.so 0x0000000106df7813 _ctypes_callproc + 787
9 _ctypes.cpython-37m-darwin.so 0x0000000106df1583 PyCFuncPtr_call + 1043
10 org.python.python 0x000000010031f75f _PyObject_FastCallKeywords + 559
11 org.python.python 0x00000001003e926a call_function + 714
12 org.python.python 0x00000001003e196b _PyEval_EvalFrameDefault + 5707
13 org.python.python 0x00000001003e9e81 _PyEval_EvalCodeWithName + 2721
14 org.python.python 0x000000010031f3d2 _PyFunction_FastCallDict + 450
15 org.python.python 0x0000000100327740 property_descr_get + 160
16 org.python.python 0x000000010035adc5 _PyObject_GenericGetAttrWithDict + 181
17 org.python.python 0x000000010036ffce slot_tp_getattr_hook + 398
18 org.python.python 0x00000001003e6080 _PyEval_EvalFrameDefault + 23904
19 org.python.python 0x000000010031fdf3 function_code_fastcall + 195
20 org.python.python 0x00000001003e9271 call_function + 721
21 org.python.python 0x00000001003e18da _PyEval_EvalFrameDefault + 5562
22 org.python.python 0x000000010031fdf3 function_code_fastcall + 195
23 org.python.python 0x00000001003e9271 call_function + 721
24 org.python.python 0x00000001003e18c0 _PyEval_EvalFrameDefault + 5536
25 org.python.python 0x000000010031fdf3 function_code_fastcall + 195
26 org.python.python 0x00000001003e9271 call_function + 721
27 org.python.python 0x00000001003e18c0 _PyEval_EvalFrameDefault + 5536
28 org.python.python 0x00000001003e9e81 _PyEval_EvalCodeWithName + 2721
29 org.python.python 0x000000010031f8f6 _PyFunction_FastCallKeywords + 230
30 org.python.python 0x00000001003e9271 call_function + 721
31 org.python.python 0x00000001003e1a09 _PyEval_EvalFrameDefault + 5865
32 org.python.python 0x00000001003e9e81 _PyEval_EvalCodeWithName + 2721
33 org.python.python 0x000000010031f3d2 _PyFunction_FastCallDict + 450
34 org.python.python 0x00000001003e1c45 _PyEval_EvalFrameDefault + 6437
35 org.python.python 0x00000001003e9e81 _PyEval_EvalCodeWithName + 2721
36 org.python.python 0x000000010031f3d2 _PyFunction_FastCallDict + 450
37 org.python.python 0x0000000100320886 _PyObject_Call_Prepend + 150
38 org.python.python 0x000000010031fa58 PyObject_Call + 136
39 org.python.python 0x00000001003e1c45 _PyEval_EvalFrameDefault + 6437
40 org.python.python 0x00000001003e9e81 _PyEval_EvalCodeWithName + 2721
41 org.python.python 0x000000010031f3d2 _PyFunction_FastCallDict + 450
42 org.python.python 0x00000001003e1c45 _PyEval_EvalFrameDefault + 6437
43 org.python.python 0x00000001003e9e81 _PyEval_EvalCodeWithName + 2721
44 org.python.python 0x000000010031f3d2 _PyFunction_FastCallDict + 450
45 org.python.python 0x00000001003e1c45 _PyEval_EvalFrameDefault + 6437
46 org.python.python 0x00000001003e9e81 _PyEval_EvalCodeWithName + 2721
47 org.python.python 0x000000010031f8f6 _PyFunction_FastCallKeywords + 230
48 org.python.python 0x00000001003e9271 call_function + 721
49 org.python.python 0x00000001003e1a09 _PyEval_EvalFrameDefault + 5865
50 org.python.python 0x00000001003e9e81 _PyEval_EvalCodeWithName + 2721
51 org.python.python 0x000000010031f8f6 _PyFunction_FastCallKeywords + 230
52 org.python.python 0x00000001003e9271 call_function + 721
53 org.python.python 0x00000001003e196b _PyEval_EvalFrameDefault + 5707
54 org.python.python 0x000000010031fdf3 function_code_fastcall + 195
55 org.python.python 0x00000001003e9271 call_function + 721
56 org.python.python 0x00000001003e18da _PyEval_EvalFrameDefault + 5562
57 org.python.python 0x000000010031fdf3 function_code_fastcall + 195
58 org.python.python 0x00000001003e9271 call_function + 721
59 org.python.python 0x00000001003e18c0 _PyEval_EvalFrameDefault + 5536
60 org.python.python 0x000000010031fdf3 function_code_fastcall + 195
61 org.python.python 0x00000001003e9271 call_function + 721
62 org.python.python 0x00000001003e18c0 _PyEval_EvalFrameDefault + 5536
63 org.python.python 0x000000010031fdf3 function_code_fastcall + 195
64 org.python.python 0x00000001003e9271 call_function + 721
65 org.python.python 0x00000001003e18da _PyEval_EvalFrameDefault + 5562
66 org.python.python 0x00000001003e9e81 _PyEval_EvalCodeWithName + 2721
67 org.python.python 0x000000010031f3d2 _PyFunction_FastCallDict + 450
68 QtCore.so 0x000000010dc0b828 PyQtSlot::call(_object*, _object*) const + 40
69 QtCore.so 0x000000010dc0b727 PyQtSlot::invoke(void**, _object*, void*, bool) const + 391
70 QtCore.so 0x000000010dc0c268 PyQtSlotProxy::unislot(void**) + 88
71 QtCore.so 0x000000010dc0c1da PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
72 QtCore 0x000000010d7333d6 QMetaObject::activate(QObject*, int, int, void**) + 2230
73 QtWidgets 0x000000010ca76345 QAction::activate(QAction::ActionEvent) + 309
74 QtCore 0x000000010d7336aa QMetaObject::activate(QObject*, int, int, void**) + 2954
75 QtCore 0x000000010d72b944 QObject::event(QEvent*) + 788
76 QtWidgets 0x000000010ca7fb82 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 306
77 QtWidgets 0x000000010ca80e9f QApplication::notify(QObject*, QEvent*) + 383
78 QtWidgets.so 0x000000010c651f8a sipQApplication::notify(QObject*, QEvent*) + 234
79 QtCore 0x000000010d702a7f QCoreApplication::notifyInternal2(QObject*, QEvent*) + 159
80 QtCore 0x000000010d703c32 QCoreApplicationPrivate::sendPostedEvents(QObject*, int, QThreadData*) + 850
81 libqcocoa.dylib 0x0000000115cd3e8e 0x115cac000 + 163470
82 libqcocoa.dylib 0x0000000115cd4741 0x115cac000 + 165697
83 com.apple.CoreFoundation 0x00007fff560525a1 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
84 com.apple.CoreFoundation 0x00007fff5610c35c __CFRunLoopDoSource0 + 108
85 com.apple.CoreFoundation 0x00007fff56035040 __CFRunLoopDoSources0 + 208
86 com.apple.CoreFoundation 0x00007fff560344bd __CFRunLoopRun + 1293
87 com.apple.CoreFoundation 0x00007fff56033d23 CFRunLoopRunSpecific + 483
88 com.apple.HIToolbox 0x00007fff5534be26 RunCurrentEventLoopInMode + 286
89 com.apple.HIToolbox 0x00007fff5534ba9f ReceiveNextEventCommon + 366
90 com.apple.HIToolbox 0x00007fff5534b914 _BlockUntilNextEventMatchingListInModeWithFilter + 64
91 com.apple.AppKit 0x00007fff53616f5f _DPSNextEvent + 2085
92 com.apple.AppKit 0x00007fff53dacb4c -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 3044
93 com.apple.AppKit 0x00007fff5360bd6d -[NSApplication run] + 764
94 libqcocoa.dylib 0x0000000115cd353d 0x115cac000 + 161085
95 QtCore 0x000000010d6fe742 QEventLoop::exec(QFlags) + 418
96 QtCore 0x000000010d703172 QCoreApplication::exec() + 402
97 QtWidgets.so 0x000000010c73fdc2 meth_QApplication_exec_(_object*, _object*) + 82
98 org.python.python 0x00000001003203ab _PyMethodDef_RawFastCallKeywords + 251
99 org.python.python 0x000000010031f93c _PyCFunction_FastCallKeywords + 44
100 org.python.python 0x00000001003e9209 call_function + 617
101 org.python.python 0x00000001003e18da _PyEval_EvalFrameDefault + 5562
102 org.python.python 0x000000010031fdf3 function_code_fastcall + 195
103 org.python.python 0x00000001003e9271 call_function + 721
104 org.python.python 0x00000001003e18da _PyEval_EvalFrameDefault + 5562
105 org.python.python 0x00000001003e9e81 _PyEval_EvalCodeWithName + 2721
106 org.python.python 0x000000010031f8f6 _PyFunction_FastCallKeywords + 230
107 org.python.python 0x00000001003e9271 call_function + 721
108 org.python.python 0x00000001003e196b _PyEval_EvalFrameDefault + 5707
109 org.python.python 0x00000001003e9e81 _PyEval_EvalCodeWithName + 2721
110 org.python.python 0x00000001003e0280 PyEval_EvalCode + 48
111 org.python.python 0x00000001003dd9c3 builtin_exec + 563
112 org.python.python 0x000000010032055e _PyMethodDef_RawFastCallKeywords + 686
113 org.python.python 0x000000010031f93c _PyCFunction_FastCallKeywords + 44
114 org.python.python 0x00000001003e9209 call_function + 617
115 org.python.python 0x00000001003e196b _PyEval_EvalFrameDefault + 5707
116 org.python.python 0x00000001003e9e81 _PyEval_EvalCodeWithName + 2721
117 org.python.python 0x000000010031f8f6 _PyFunction_FastCallKeywords + 230
118 org.python.python 0x00000001003e9271 call_function + 721
119 org.python.python 0x00000001003e196b _PyEval_EvalFrameDefault + 5707
120 org.python.python 0x00000001003e9e81 _PyEval_EvalCodeWithName + 2721
121 org.python.python 0x000000010031f3d2 _PyFunction_FastCallDict + 450
122 org.python.python 0x000000010043e4c3 pymain_run_module + 147
123 org.python.python 0x000000010043d2d6 pymain_main + 4262
124 org.python.python 0x000000010043c223 Py_Main + 51
125 edu.ucsf.cgl.ChimeraX 0x00000001002f6e16 main + 278
126 libdyld.dylib 0x00007fff7d89e115 start + 1
Thread 1:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff7d9e47c2 mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7d9e3cdc mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff56035355 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff560346a7 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff56033d23 CFRunLoopRunSpecific + 483
5 com.apple.AppKit 0x00007fff537543c8 _NSEventThread + 184
6 libsystem_pthread.dylib 0x00007fff7db296c1 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff7db2956d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff7db28c5d thread_start + 13
Thread 2:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff7d9ef372 poll + 10
1 QtCore 0x000000010d755b40 qt_safe_poll(pollfd*, unsigned int, timespec const*) + 544
2 QtCore 0x000000010d7571b9 QEventDispatcherUNIX::processEvents(QFlags) + 857
3 QtCore 0x000000010d6fe742 QEventLoop::exec(QFlags) + 418
4 QtWebEngineCore 0x000000010e298c4a 0x10e277000 + 138314
5 QtWebEngineCore 0x000000010ee9410e 0x10e277000 + 12701966
6 QtWebEngineCore 0x000000010eeb8531 0x10e277000 + 12850481
7 QtWebEngineCore 0x000000010eeec36b 0x10e277000 + 13063019
8 QtWebEngineCore 0x000000010eee5667 0x10e277000 + 13035111
9 libsystem_pthread.dylib 0x00007fff7db296c1 _pthread_body + 340
10 libsystem_pthread.dylib 0x00007fff7db2956d _pthread_start + 377
11 libsystem_pthread.dylib 0x00007fff7db28c5d thread_start + 13
Thread 3:: DnsConfigService
0 libsystem_kernel.dylib 0x00007fff7d9eeec2 kevent + 10
1 QtWebEngineCore 0x000000010f3a5469 0x10e277000 + 18015337
2 QtWebEngineCore 0x000000010f3a275d 0x10e277000 + 18003805
3 QtWebEngineCore 0x000000010ee9699f 0x10e277000 + 12712351
4 QtWebEngineCore 0x000000010ee9410e 0x10e277000 + 12701966
5 QtWebEngineCore 0x000000010eeb8531 0x10e277000 + 12850481
6 QtWebEngineCore 0x000000010eeec36b 0x10e277000 + 13063019
7 QtWebEngineCore 0x000000010eee5667 0x10e277000 + 13035111
8 libsystem_pthread.dylib 0x00007fff7db296c1 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff7db2956d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff7db28c5d thread_start + 13
Thread 4:: Chrome_DBThread
0 libsystem_kernel.dylib 0x00007fff7d9e47c2 mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7d9e3cdc mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff56035355 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff560346a7 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff56033d23 CFRunLoopRunSpecific + 483
5 QtWebEngineCore 0x000000010ee9790f 0x10e277000 + 12716303
6 QtWebEngineCore 0x000000010ee972a4 0x10e277000 + 12714660
7 QtWebEngineCore 0x000000010ee9410e 0x10e277000 + 12701966
8 QtWebEngineCore 0x000000010eeb8531 0x10e277000 + 12850481
9 QtWebEngineCore 0x000000010e564958 0x10e277000 + 3070296
10 QtWebEngineCore 0x000000010e564d1f 0x10e277000 + 3071263
11 QtWebEngineCore 0x000000010eeec36b 0x10e277000 + 13063019
12 QtWebEngineCore 0x000000010eee5667 0x10e277000 + 13035111
13 libsystem_pthread.dylib 0x00007fff7db296c1 _pthread_body + 340
14 libsystem_pthread.dylib 0x00007fff7db2956d _pthread_start + 377
15 libsystem_pthread.dylib 0x00007fff7db28c5d thread_start + 13
Thread 5:: Chrome_FileThread
0 libsystem_kernel.dylib 0x00007fff7d9eeec2 kevent + 10
1 QtWebEngineCore 0x000000010f3a5469 0x10e277000 + 18015337
2 QtWebEngineCore 0x000000010f3a275d 0x10e277000 + 18003805
3 QtWebEngineCore 0x000000010ee9699f 0x10e277000 + 12712351
4 QtWebEngineCore 0x000000010ee9410e 0x10e277000 + 12701966
5 QtWebEngineCore 0x000000010eeb8531 0x10e277000 + 12850481
6 QtWebEngineCore 0x000000010e5649d8 0x10e277000 + 3070424
7 QtWebEngineCore 0x000000010e564d2f 0x10e277000 + 3071279
8 QtWebEngineCore 0x000000010eeec36b 0x10e277000 + 13063019
9 QtWebEngineCore 0x000000010eee5667 0x10e277000 + 13035111
10 libsystem_pthread.dylib 0x00007fff7db296c1 _pthread_body + 340
11 libsystem_pthread.dylib 0x00007fff7db2956d _pthread_start + 377
12 libsystem_pthread.dylib 0x00007fff7db28c5d thread_start + 13
Thread 6:: Chrome_FileUserBlockingThread
0 libsystem_kernel.dylib 0x00007fff7d9e47c2 mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7d9e3cdc mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff56035355 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff560346a7 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff56033d23 CFRunLoopRunSpecific + 483
5 QtWebEngineCore 0x000000010ee9790f 0x10e277000 + 12716303
6 QtWebEngineCore 0x000000010ee972a4 0x10e277000 + 12714660
7 QtWebEngineCore 0x000000010ee9410e 0x10e277000 + 12701966
8 QtWebEngineCore 0x000000010eeb8531 0x10e277000 + 12850481
9 QtWebEngineCore 0x000000010e564a58 0x10e277000 + 3070552
10 QtWebEngineCore 0x000000010e564d3f 0x10e277000 + 3071295
11 QtWebEngineCore 0x000000010eeec36b 0x10e277000 + 13063019
12 QtWebEngineCore 0x000000010eee5667 0x10e277000 + 13035111
13 libsystem_pthread.dylib 0x00007fff7db296c1 _pthread_body + 340
14 libsystem_pthread.dylib 0x00007fff7db2956d _pthread_start + 377
15 libsystem_pthread.dylib 0x00007fff7db28c5d thread_start + 13
Thread 7:: Chrome_ProcessLauncherThread
0 libsystem_kernel.dylib 0x00007fff7d9e47c2 mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7d9e3cdc mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff56035355 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff560346a7 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff56033d23 CFRunLoopRunSpecific + 483
5 QtWebEngineCore 0x000000010ee9790f 0x10e277000 + 12716303
6 QtWebEngineCore 0x000000010ee972a4 0x10e277000 + 12714660
7 QtWebEngineCore 0x000000010ee9410e 0x10e277000 + 12701966
8 QtWebEngineCore 0x000000010eeb8531 0x10e277000 + 12850481
9 QtWebEngineCore 0x000000010e564ad8 0x10e277000 + 3070680
10 QtWebEngineCore 0x000000010e564d4c 0x10e277000 + 3071308
11 QtWebEngineCore 0x000000010eeec36b 0x10e277000 + 13063019
12 QtWebEngineCore 0x000000010eee5667 0x10e277000 + 13035111
13 libsystem_pthread.dylib 0x00007fff7db296c1 _pthread_body + 340
14 libsystem_pthread.dylib 0x00007fff7db2956d _pthread_start + 377
15 libsystem_pthread.dylib 0x00007fff7db28c5d thread_start + 13
Thread 8:: Chrome_CacheThread
0 libsystem_kernel.dylib 0x00007fff7d9e47c2 mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7d9e3cdc mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff56035355 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff560346a7 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff56033d23 CFRunLoopRunSpecific + 483
5 QtWebEngineCore 0x000000010ee9790f 0x10e277000 + 12716303
6 QtWebEngineCore 0x000000010ee972a4 0x10e277000 + 12714660
7 QtWebEngineCore 0x000000010ee9410e 0x10e277000 + 12701966
8 QtWebEngineCore 0x000000010eeb8531 0x10e277000 + 12850481
9 QtWebEngineCore 0x000000010e564b58 0x10e277000 + 3070808
10 QtWebEngineCore 0x000000010e564d59 0x10e277000 + 3071321
11 QtWebEngineCore 0x000000010eeec36b 0x10e277000 + 13063019
12 QtWebEngineCore 0x000000010eee5667 0x10e277000 + 13035111
13 libsystem_pthread.dylib 0x00007fff7db296c1 _pthread_body + 340
14 libsystem_pthread.dylib 0x00007fff7db2956d _pthread_start + 377
15 libsystem_pthread.dylib 0x00007fff7db28c5d thread_start + 13
Thread 9:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff7d9eeec2 kevent + 10
1 QtWebEngineCore 0x000000010f3a5469 0x10e277000 + 18015337
2 QtWebEngineCore 0x000000010f3a275d 0x10e277000 + 18003805
3 QtWebEngineCore 0x000000010ee9699f 0x10e277000 + 12712351
4 QtWebEngineCore 0x000000010ee9410e 0x10e277000 + 12701966
5 QtWebEngineCore 0x000000010eeb8531 0x10e277000 + 12850481
6 QtWebEngineCore 0x000000010e564bd8 0x10e277000 + 3070936
7 QtWebEngineCore 0x000000010e564d66 0x10e277000 + 3071334
8 QtWebEngineCore 0x000000010eeec36b 0x10e277000 + 13063019
9 QtWebEngineCore 0x000000010eee5667 0x10e277000 + 13035111
10 libsystem_pthread.dylib 0x00007fff7db296c1 _pthread_body + 340
11 libsystem_pthread.dylib 0x00007fff7db2956d _pthread_start + 377
12 libsystem_pthread.dylib 0x00007fff7db28c5d thread_start + 13
Thread 10:: BrowserBlockingWorker1/79107
0 libsystem_kernel.dylib 0x00007fff7d9edcee __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff7db2a662 _pthread_cond_wait + 732
2 QtWebEngineCore 0x000000010eee6c1f 0x10e277000 + 13040671
3 QtWebEngineCore 0x000000010eee62e6 0x10e277000 + 13038310
4 QtWebEngineCore 0x000000010eeea18d 0x10e277000 + 13054349
5 QtWebEngineCore 0x000000010eee5667 0x10e277000 + 13035111
6 libsystem_pthread.dylib 0x00007fff7db296c1 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff7db2956d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff7db28c5d thread_start + 13
Thread 11:: IndexedDB
0 libsystem_kernel.dylib 0x00007fff7d9e47c2 mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7d9e3cdc mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff56035355 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff560346a7 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff56033d23 CFRunLoopRunSpecific + 483
5 QtWebEngineCore 0x000000010ee9790f 0x10e277000 + 12716303
6 QtWebEngineCore 0x000000010ee972a4 0x10e277000 + 12714660
7 QtWebEngineCore 0x000000010ee9410e 0x10e277000 + 12701966
8 QtWebEngineCore 0x000000010eeb8531 0x10e277000 + 12850481
9 QtWebEngineCore 0x000000010eeec36b 0x10e277000 + 13063019
10 QtWebEngineCore 0x000000010eee5667 0x10e277000 + 13035111
11 libsystem_pthread.dylib 0x00007fff7db296c1 _pthread_body + 340
12 libsystem_pthread.dylib 0x00007fff7db2956d _pthread_start + 377
13 libsystem_pthread.dylib 0x00007fff7db28c5d thread_start + 13
Thread 12:: CompositorTileWorker1/78339
0 libsystem_kernel.dylib 0x00007fff7d9edcee __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff7db2a662 _pthread_cond_wait + 732
2 QtWebEngineCore 0x000000010fa85cf8 0x10e277000 + 25226488
3 QtWebEngineCore 0x000000010eeea18d 0x10e277000 + 13054349
4 QtWebEngineCore 0x000000010eee5667 0x10e277000 + 13035111
5 libsystem_pthread.dylib 0x00007fff7db296c1 _pthread_body + 340
6 libsystem_pthread.dylib 0x00007fff7db2956d _pthread_start + 377
7 libsystem_pthread.dylib 0x00007fff7db28c5d thread_start + 13
Thread 13:: AudioThread
0 libsystem_kernel.dylib 0x00007fff7d9e47c2 mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7d9e3cdc mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff56035355 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff560346a7 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff56033d23 CFRunLoopRunSpecific + 483
5 QtWebEngineCore 0x000000010ee9790f 0x10e277000 + 12716303
6 QtWebEngineCore 0x000000010ee972a4 0x10e277000 + 12714660
7 QtWebEngineCore 0x000000010ee9410e 0x10e277000 + 12701966
8 QtWebEngineCore 0x000000010eeb8531 0x10e277000 + 12850481
9 QtWebEngineCore 0x000000010eeec36b 0x10e277000 + 13063019
10 QtWebEngineCore 0x000000010eee5667 0x10e277000 + 13035111
11 libsystem_pthread.dylib 0x00007fff7db296c1 _pthread_body + 340
12 libsystem_pthread.dylib 0x00007fff7db2956d _pthread_start + 377
13 libsystem_pthread.dylib 0x00007fff7db28c5d thread_start + 13
Thread 14:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff7d9e47c2 mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7d9e3cdc mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff56035355 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff560346a7 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff56033d23 CFRunLoopRunSpecific + 483
5 QtWebEngineCore 0x000000010ee9790f 0x10e277000 + 12716303
6 QtWebEngineCore 0x000000010ee972a4 0x10e277000 + 12714660
7 QtWebEngineCore 0x000000010ee9410e 0x10e277000 + 12701966
8 QtWebEngineCore 0x000000010eeb8531 0x10e277000 + 12850481
9 QtWebEngineCore 0x000000010eeec36b 0x10e277000 + 13063019
10 QtWebEngineCore 0x000000010eee5667 0x10e277000 + 13035111
11 libsystem_pthread.dylib 0x00007fff7db296c1 _pthread_body + 340
12 libsystem_pthread.dylib 0x00007fff7db2956d _pthread_start + 377
13 libsystem_pthread.dylib 0x00007fff7db28c5d thread_start + 13
Thread 15:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff7d9eeec2 kevent + 10
1 QtWebEngineCore 0x000000010f3a5469 0x10e277000 + 18015337
2 QtWebEngineCore 0x000000010f3a275d 0x10e277000 + 18003805
3 QtWebEngineCore 0x000000010ee9699f 0x10e277000 + 12712351
4 QtWebEngineCore 0x000000010ee9410e 0x10e277000 + 12701966
5 QtWebEngineCore 0x000000010eeb8531 0x10e277000 + 12850481
6 QtWebEngineCore 0x000000010eeec36b 0x10e277000 + 13063019
7 QtWebEngineCore 0x000000010eee5667 0x10e277000 + 13035111
8 libsystem_pthread.dylib 0x00007fff7db296c1 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff7db2956d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff7db28c5d thread_start + 13
Thread 16:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff7d9ef372 poll + 10
1 QtCore 0x000000010d755b40 qt_safe_poll(pollfd*, unsigned int, timespec const*) + 544
2 QtCore 0x000000010d7571b9 QEventDispatcherUNIX::processEvents(QFlags) + 857
3 QtCore 0x000000010d6fe742 QEventLoop::exec(QFlags) + 418
4 QtWebEngineCore 0x000000010e298c4a 0x10e277000 + 138314
5 QtWebEngineCore 0x000000010ee9410e 0x10e277000 + 12701966
6 QtWebEngineCore 0x000000010eeb8531 0x10e277000 + 12850481
7 QtWebEngineCore 0x000000010eeec36b 0x10e277000 + 13063019
8 QtWebEngineCore 0x000000010eee5667 0x10e277000 + 13035111
9 libsystem_pthread.dylib 0x00007fff7db296c1 _pthread_body + 340
10 libsystem_pthread.dylib 0x00007fff7db2956d _pthread_start + 377
11 libsystem_pthread.dylib 0x00007fff7db28c5d thread_start + 13
Thread 17:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff7d9ef372 poll + 10
1 QtCore 0x000000010d755b40 qt_safe_poll(pollfd*, unsigned int, timespec const*) + 544
2 QtCore 0x000000010d7571b9 QEventDispatcherUNIX::processEvents(QFlags) + 857
3 QtCore 0x000000010d6fe742 QEventLoop::exec(QFlags) + 418
4 QtWebEngineCore 0x000000010e298c4a 0x10e277000 + 138314
5 QtWebEngineCore 0x000000010ee9410e 0x10e277000 + 12701966
6 QtWebEngineCore 0x000000010eeb8531 0x10e277000 + 12850481
7 QtWebEngineCore 0x000000010eeec36b 0x10e277000 + 13063019
8 QtWebEngineCore 0x000000010eee5667 0x10e277000 + 13035111
9 libsystem_pthread.dylib 0x00007fff7db296c1 _pthread_body + 340
10 libsystem_pthread.dylib 0x00007fff7db2956d _pthread_start + 377
11 libsystem_pthread.dylib 0x00007fff7db28c5d thread_start + 13
Thread 18:
0 libsystem_kernel.dylib 0x00007fff7d9edcee __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff7db2a662 _pthread_cond_wait + 732
2 libopenblasp-r0.3.5.dev.dylib 0x00000001011bba3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff7db296c1 _pthread_body + 340
4 libsystem_pthread.dylib 0x00007fff7db2956d _pthread_start + 377
5 libsystem_pthread.dylib 0x00007fff7db28c5d thread_start + 13
Thread 19:
0 libsystem_kernel.dylib 0x00007fff7d9edcee __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff7db2a662 _pthread_cond_wait + 732
2 libopenblasp-r0.3.5.dev.dylib 0x00000001011bba3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff7db296c1 _pthread_body + 340
4 libsystem_pthread.dylib 0x00007fff7db2956d _pthread_start + 377
5 libsystem_pthread.dylib 0x00007fff7db28c5d thread_start + 13
Thread 20:
0 libsystem_kernel.dylib 0x00007fff7d9edcee __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff7db2a662 _pthread_cond_wait + 732
2 libopenblasp-r0.3.5.dev.dylib 0x00000001011bba3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff7db296c1 _pthread_body + 340
4 libsystem_pthread.dylib 0x00007fff7db2956d _pthread_start + 377
5 libsystem_pthread.dylib 0x00007fff7db28c5d thread_start + 13
Thread 21:: BrowserBlockingWorker2/107527
0 libsystem_kernel.dylib 0x00007fff7d9edcee __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff7db2a662 _pthread_cond_wait + 732
2 QtWebEngineCore 0x000000010eee6c1f 0x10e277000 + 13040671
3 QtWebEngineCore 0x000000010eee62e6 0x10e277000 + 13038310
4 QtWebEngineCore 0x000000010eeea18d 0x10e277000 + 13054349
5 QtWebEngineCore 0x000000010eee5667 0x10e277000 + 13035111
6 libsystem_pthread.dylib 0x00007fff7db296c1 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff7db2956d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff7db28c5d thread_start + 13
Thread 22:: BrowserBlockingWorker3/130367
0 libsystem_kernel.dylib 0x00007fff7d9edcee __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff7db2a662 _pthread_cond_wait + 732
2 QtWebEngineCore 0x000000010eee6c1f 0x10e277000 + 13040671
3 QtWebEngineCore 0x000000010eee62e6 0x10e277000 + 13038310
4 QtWebEngineCore 0x000000010eeea18d 0x10e277000 + 13054349
5 QtWebEngineCore 0x000000010eee5667 0x10e277000 + 13035111
6 libsystem_pthread.dylib 0x00007fff7db296c1 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff7db2956d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff7db28c5d thread_start + 13
Thread 23:: QFileInfoGatherer
0 libsystem_kernel.dylib 0x00007fff7d9edcee __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff7db2a662 _pthread_cond_wait + 732
2 QtCore 0x000000010d54458b 0x10d517000 + 185739
3 QtCore 0x000000010d544522 QWaitCondition::wait(QMutex*, unsigned long) + 162
4 QtWidgets 0x000000010cca5862 0x10ca6e000 + 2324578
5 QtCore 0x000000010d542fbf 0x10d517000 + 180159
6 libsystem_pthread.dylib 0x00007fff7db296c1 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff7db2956d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff7db28c5d thread_start + 13
Thread 24:
0 libsystem_pthread.dylib 0x00007fff7db28c40 start_wqthread + 0
1 ??? 0x0000000000000100 0 + 256
Thread 25:
0 libsystem_pthread.dylib 0x00007fff7db28c40 start_wqthread + 0
1 ??? 0x0000000300020002 0 + 12885032962
Thread 26:
0 libsystem_pthread.dylib 0x00007fff7db28c40 start_wqthread + 0
1 ??? 0x4058504320000000 0 + 4636544065607827456
Thread 27:
0 libsystem_pthread.dylib 0x00007fff7db28c40 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x00007fffb699e340 rcx: 0x000000010074da48 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x000000010074da80 rsp: 0x000000010074da48
r8: 0x000000010074df48 r9: 0x0000000000000000 r10: 0x00007fffb699e388 r11: 0x0000000000000287
r12: 0x0000000000000307 r13: 0x00007fc24a2db9b0 r14: 0x000000000000000b r15: 0x000000000000002d
rip: 0x00007fff7d9ede3e rfl: 0x0000000000000286 cr2: 0x0000000100548284
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x106f0e000 - 0x106f12ff7 +libqsvg.dylib (0) /Applications/ChimeraX.app/Contents/lib/python3.7/site-packages/PyQt5/Qt/plugins/imageformats/libqsvg.dylib
0x106f16000 - 0x106f1aff7 +libqtga.dylib (0) /Applications/ChimeraX.app/Contents/lib/python3.7/site-packages/PyQt5/Qt/plugins/imageformats/libqtga.dylib
0x106f1e000 - 0x106f22ff3 +libqwbmp.dylib (0) /Applications/ChimeraX.app/Contents/lib/python3.7/site-packages/PyQt5/Qt/plugins/imageformats/libqwbmp.dylib
0x106f6a000 - 0x106f77ff7 +_multiarray_tests.cpython-37m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/_multiarray_tests.cpython-37m-darwin.so
0x106fc6000 - 0x106fc7ff7 +lapack_lite.cpython-37m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/linalg/lapack_lite.cpython-37m-darwin.so
0x106fcb000 - 0x106fe4fff +_umath_linalg.cpython-37m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/linalg/_umath_linalg.cpython-37m-darwin.so
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0x107a4e000 - 0x107a4fff3 +_queue.cpython-37m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_queue.cpython-37m-darwin.so
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0x107c39000 - 0x107c68ff3 +arraydatatype.cpython-37m-darwin.so (0) /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/PyOpenGL_accelerate-3.1.3b1-py3.7-macosx-10.9-x86_64.egg/OpenGL_accelerate/arraydatatype.cpython-37m-darwin.so
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0x7fff7da44000 - 0x7fff7da63fff libsystem_malloc.dylib (140.1.1) /usr/lib/system/libsystem_malloc.dylib
0x7fff7da64000 - 0x7fff7db08ff3 libsystem_network.dylib (1229.30.11) /usr/lib/system/libsystem_network.dylib
0x7fff7db09000 - 0x7fff7db13ffb libsystem_networkextension.dylib (767.30.7) /usr/lib/system/libsystem_networkextension.dylib
0x7fff7db14000 - 0x7fff7db1dff3 libsystem_notify.dylib (172) /usr/lib/system/libsystem_notify.dylib
0x7fff7db1e000 - 0x7fff7db25ff7 libsystem_platform.dylib (161.20.1) /usr/lib/system/libsystem_platform.dylib
0x7fff7db26000 - 0x7fff7db31fff libsystem_pthread.dylib (301.30.1) /usr/lib/system/libsystem_pthread.dylib
0x7fff7db32000 - 0x7fff7db35ff3 libsystem_sandbox.dylib (765.30.4) /usr/lib/system/libsystem_sandbox.dylib
0x7fff7db36000 - 0x7fff7db37ff3 libsystem_secinit.dylib (30) /usr/lib/system/libsystem_secinit.dylib
0x7fff7db38000 - 0x7fff7db3fff7 libsystem_symptoms.dylib (820.30.7) /usr/lib/system/libsystem_symptoms.dylib
0x7fff7db40000 - 0x7fff7db53ff7 libsystem_trace.dylib (829.30.14) /usr/lib/system/libsystem_trace.dylib
0x7fff7db55000 - 0x7fff7db5aff7 libunwind.dylib (35.3) /usr/lib/system/libunwind.dylib
0x7fff7db5b000 - 0x7fff7db87ff7 libxpc.dylib (1205.30.29) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 161
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 1075349
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=645.0M resident=0K(0%) swapped_out_or_unallocated=645.0M(100%)
Writable regions: Total=1.7G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.7G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 512K 5
Activity Tracing 256K 2
CG backing stores 60.2M 15
CG image 564K 55
CoreAnimation 4060K 96
CoreGraphics 8K 2
CoreImage 344K 43
CoreUI image data 5948K 36
CoreUI image file 216K 5
Foundation 4K 2
Image IO 64K 2
Kernel Alloc Once 8K 2
MALLOC 1.3G 496
MALLOC guard page 64K 15
MALLOC_LARGE (reserved) 384K 2 reserved VM address space (unallocated)
Memory Tag 242 12K 2
Memory Tag 251 48K 4
OpenGL GLSL 512K 7
STACK GUARD 108K 28
Stack 156.7M 29
Stack Guard 56.0M 2
VM_ALLOCATE 246.5M 466
VM_ALLOCATE (reserved) 32.0M 2 reserved VM address space (unallocated)
__DATA 46.8M 477
__FONT_DATA 4K 2
__GLSLBUILTINS 2588K 2
__LINKEDIT 208.4M 128
__TEXT 436.6M 453
__UNICODE 560K 2
mapped file 162.5M 91
shared memory 632K 12
=========== ======= =======
TOTAL 2.6G 2454
TOTAL, minus reserved VM space 2.6G 2454
System Profile:
Network Service: Ethernet, Ethernet, en0
Thunderbolt Bus: iMac, Apple Inc., 23.1
Boot Volume File System Type: hfs
Memory Module: BANK 0/DIMM0, 8 GB, DDR4, 2400 MHz, 0x802C, 0x3841544631473634485A2D324733423220202020
Memory Module: BANK 1/DIMM0, 8 GB, DDR4, 2400 MHz, 0x802C, 0x3841544631473634485A2D324733423220202020
USB Device: USB 3.0 Bus
USB Device: Bluetooth USB Host Controller
USB Device: FaceTime HD Camera (Built-in)
USB Device: Keyboard Hub
USB Device: ZOWIE Gaming mouse
USB Device: Apple Keyboard
Serial ATA Device: APPLE HDD ST3000DM001, 3 TB
Model: iMac18,3, BootROM IM183.0151.B00, 4 processors, Intel Core i5, 3.8 GHz, 16 GB, SMC 2.41f1
Graphics: Radeon Pro 580, Radeon Pro 580, PCIe, 8 GB
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x16F), Broadcom BCM43xx 1.0 (7.77.37.5.1a3)
Bluetooth: Version 6.0.2f2, 3 services, 27 devices, 1 incoming serial ports
Log:
UCSF ChimeraX version: 0.9 (2019-01-26)
© 2016-2019 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 ATI-1.60.24
OpenGL renderer: AMD Radeon Pro 580 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
Change History (2)
comment:1 by , 7 years ago
| Component: | Unassigned → Sequence |
|---|---|
| Description: | modified (diff) |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash due to NULL sseq.structure pointer |
comment:2 by , 7 years ago
| Resolution: | → duplicate |
|---|---|
| Status: | accepted → closed |
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