Registration internal error

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Linux-4.4.0-141-generic-x86_64-with-debian-stretch-sid
ChimeraX Version: 0.9 (2018-12-29)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 0.9 (2018-12-29)  
How to cite UCSF ChimeraX  

> open /home/tristanbf/4hbt.pdb

4hbt.pdb title:  
Crystal structure of native CTX-M-15 extended-spectrum β-lactamase [more
info...]  
  
Chain information for 4hbt.pdb #1  
---  
Chain | Description  
A | β-lactamase  
  
Non-standard residues in 4hbt.pdb #1  
---  
CL — chloride ion  
EDO — 1,2-ethanediol (ethylene glycol)  
SO4 — sulfate ion  
  

> show selAtoms ribbons

> select #1

2260 atoms, 2035 bonds selected  

> ~select #1

Nothing selected  

> lighting flat

> lighting flat

> lighting full

> lighting soft

> set silhouettes false

> set silhouettes true

> lighting flat

> set silhouettes false

> set silhouettes true

> lighting shadows true intensity 0.5

> lighting shadows false

> lighting shadows true

> lighting shadows false

> lighting shadows true

> lighting shadows false

> lighting shadows true

> lighting soft

> lighting shadows true intensity 0.5

> lighting shadows false

> lighting shadows true

> lighting shadows false

> lighting shadows true

> lighting shadows false

> lighting full

> lighting full

> lighting flat

> lighting simple

> color selAtoms bychain

> set bgColor white

> view cofr false

> view orient cofr false

> view orient cofr false

> view cofr false

> style selAtoms sphere

Changed 2260 atom styles  

> style selAtoms sphere

Changed 2260 atom styles  

> style selAtoms stick

Changed 2260 atom styles  

> hide selAtoms surfaces

> show selAtoms surfaces

> hide selAtoms surfaces

> show selAtoms ribbons

> hide selAtoms ribbons

> show selAtoms ribbons

> hide selAtoms

> hide #!1.1 models

> close #1.1

> hide selAtoms

> show selAtoms

> show selAtoms

> hide selAtoms

Incomplete command: sequence  

Unknown command: Sequence  

> ui mousemode rightMode select

> show selAtoms

> show selAtoms

> hide selAtoms

> style selAtoms sphere

Changed 7 atom styles  

> style selAtoms sphere

Changed 7 atom styles  

> show selAtoms

> ui mousemode rightMode label

> ui mousemode rightMode pivot

> ui mousemode rightMode pivot

> ui mousemode rightMode rotate

> ui mousemode rightMode select

> show selAtoms

> show selAtoms surfaces

> show selAtoms surfaces

> show selAtoms ribbons

> show selAtoms ribbons

> hide selAtoms surfaces

> style selAtoms sphere

Changed 4 atom styles  

> show selAtoms

> style selAtoms stick

Changed 4 atom styles  

Unknown command: start Multalign  

> close #1.1

> select sequence 4hbt

Nothing selected  

> ui mousemode rightMode select

> select /A

2260 atoms, 2035 bonds selected  

> select sequence 4hbt.pdb

Nothing selected  

Expected an objects specifieror a keyword  

Expected an objects specifieror a keyword  

> select all

2260 atoms, 2035 bonds selected  

Expected a keyword  

> toolshed show "Command Line Interface"

> toolshed show "Mouse Modes for Right Button"

> toolshed show "Marker Placement"

> ui mousemode rightMode select

> ui mousemode rightMode place marker

> show selAtoms

> show selAtoms

> color selAtoms byhetero

> color selAtoms byhetero

> color selAtoms byhetero

> style selAtoms ball

Changed 2260 atom styles  

> hide selAtoms ribbons

> show selAtoms

> show selAtoms ribbons

> hide selAtoms

> hide selAtoms

> hide selAtoms

> hide selAtoms

> save session /home/tristanbf/4hbt_figure.cxs

Session file format is not finalized, and thus might not be restorable in
other versions of ChimeraX.  

> toolshed show Registration

Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site-
packages/chimerax/ui/gui.py", line 530, in customEvent  
func(*args, **kw)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site-
packages/chimerax/registration/gui.py", line 67, in handle_scheme  
self.session.ui.thread_safe(self._register, url)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site-
packages/chimerax/ui/gui.py", line 286, in thread_safe  
func(*args, **kw)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site-
packages/chimerax/registration/gui.py", line 121, in _register  
join_announcements=values["join_announcements"])  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site-
packages/chimerax/registration/cmd.py", line 76, in register  
funding, funding_other, comment)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site-
packages/chimerax/registration/cmd.py", line 120, in _get_registration  
with urlopen(RegistrationURL, urlencode(params).encode()) as f:  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/urllib/request.py", line 223,
in urlopen  
return opener.open(url, data, timeout)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/urllib/request.py", line 532,
in open  
response = meth(req, response)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/urllib/request.py", line 642,
in http_response  
'http', request, response, code, msg, hdrs)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/urllib/request.py", line 570,
in error  
return self._call_chain(*args)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/urllib/request.py", line 504,
in _call_chain  
result = func(*args)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/urllib/request.py", line 650,
in http_error_default  
raise HTTPError(req.full_url, code, msg, hdrs, fp)  
urllib.error.HTTPError: HTTP Error 500: Registration internal error  
  
urllib.error.HTTPError: HTTP Error 500: Registration internal error  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/urllib/request.py", line 650,
in http_error_default  
raise HTTPError(req.full_url, code, msg, hdrs, fp)  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 384.130
OpenGL renderer: Quadro K1100M/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

[Conrad Huang]

Fixed in 49e0c4149.

When registration server is unreachable, catch HTTPError and print error message instead of traceback.