Timeline



Dec 28, 2020:

5:34 PM Ticket #4095 (VR initialization failure) created by unidadbiomodelos3d@…
[…]
4:00 PM Ticket #4091 (Python shell autocomplete: _queue.Empty) closed by pett
fixed: ipython implicitly relies on the 'jedi' module for auto-completion, …
3:57 PM Ticket #4094 (Python shell autocomplete: _queue.Empty) closed by pett
duplicate: Duplicate of #4091; adding Tom to recipient list for that ticket
12:58 PM Ticket #4094 (Python shell autocomplete: _queue.Empty) created by goddard@…
[…]
10:24 AM 2020-12-17 edited by pett
(diff)
9:37 AM Ticket #4092 (Toolshed using internal UI API) closed by pett
duplicate
9:34 AM Ticket #4090 (Toolshed using internal UI API) closed by pett
duplicate
9:32 AM Ticket #4089 (Nucleotides: point is None) closed by pett
duplicate: I believe this was fixed awhile ago.
9:29 AM Ticket #4088 (Crash moving window) closed by pett
can't reproduce
6:56 AM Ticket #4093 (OpenMM crash uploading OpenCL array) created by chimerax-bug-report@…
[…]
12:06 AM Ticket #4092 (Toolshed using internal UI API) created by chimerax-bug-report@…
[…]

Dec 27, 2020:

5:04 PM Ticket #4091 (Python shell autocomplete: _queue.Empty) created by Tony Schaefer
[…]

Dec 26, 2020:

7:15 PM Ticket #4090 (Toolshed using internal UI API) created by chimerax-bug-report@…
[…]
12:03 PM Ticket #4089 (Nucleotides: point is None) created by chimerax-bug-report@…
[…]

Dec 23, 2020:

8:00 PM Ticket #4088 (Crash moving window) created by chimerax-bug-report@…
[…]
5:45 PM Ticket #4087 (Wide tool can nuke graphics window) created by Elaine Meng
Opening the attached alignment on the right side of the main window …
5:20 PM Ticket #4075 (Error saving tool position of stacked tool) closed by pett
fixed: Fixed. PyQt returned an int for which side the tool was on, whereas …
10:12 AM Ticket #4086 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) closed by pett
fixed: Hi Roberto, Thanks for reporting this problem. It has been fixed in …
2:53 AM Ticket #4086 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) created by roberto.marotta@…
[…]

Dec 22, 2020:

10:03 PM Ticket #4085 (Webcam command broken by pyside2) created by goddard@…
[…]
10:00 PM Ticket #4068 (Programmer documentation missing atomic and map_data classes) closed by Tom Goddard
fixed: Fixed. Took out the LD_LIBRARY_PATH fix that allowed Sphinx to import …
9:54 PM Ticket #4073 (Need reliable linking for python C++ modules using libarrays) closed by Tom Goddard
fixed: Fixed. Made all 21 C++ Python modules that depend on libarrays call …
6:18 PM Ticket #4084 (Wrong numpy parsing in Coulombic C++ module) created by Tom Goddard
The code in Coulombic esp.cpp in potential_at_points() for parsing …
4:16 PM Ticket #4080 (drag-select rectangle invisible on gray background) closed by Tom Goddard
fixed: Fixed. Made the selection drag box always green against any …
1:01 PM Ticket #4083 (need some way to see association when model color is white) created by Elaine Meng
If the model color is white and I associate it with a sequence, you …
11:55 AM Ticket #4082 (over-selection when clicking feature regions in Sequence Viewer) closed by pett
fixed: The code to form a "concise residue spec" from a set of residues was wrong.
10:21 AM ChangeLog edited by pett
(diff)
10:01 AM Ticket #4079 (Crash rendering scene graph) closed by pett
can't reproduce
9:14 AM Ticket #4082 (over-selection when clicking feature regions in Sequence Viewer) created by Elaine Meng
open uniprot:pdcd1_human open 3bp5 sequence associate /A pdcd1_human …
8:38 AM Ticket #4081 (Sequence Viewer assoc dialog incorrectly says not associated) created by Elaine Meng
Opening the attached cxc file fetches uniprot sequences and associates …
8:30 AM Ticket #4080 (drag-select rectangle invisible on gray background) created by Elaine Meng
The drag-select rectangle shows as a green line against black …
12:15 AM Ticket #4079 (Crash rendering scene graph) created by chimerax-bug-report@…
[…]

Dec 21, 2020:

6:34 PM Ticket #4078 (Testing bug reporter improved error message code) closed by Tom Goddard
fixed: Working.
6:31 PM Ticket #4076 (Bug report with bug-reporter failure(!)) closed by Tom Goddard
fixed: Fixed. The bug reporter traceback was from submitting the bug with no …
6:27 PM Ticket #4078 (Testing bug reporter improved error message code) created by goddard@…
[…]
4:51 PM Ticket #840 (Make 2d labels a model shown in Model Panel) closed by Tom Goddard
fixed: This was implemented long ago.
3:29 PM Ticket #4077 (labels with onTop false have silhouette edge rectangles) created by Elaine Meng
with labels onTop false and graphics silhouette true, all of the 3D …
1:59 PM ChangeLog edited by pett
(diff)
1:48 PM Ticket #4074 (ValueError after closing one session and opening another) closed by pett
can't reproduce: Unfortunately the problem (Sequence Viewer showing alignment not …
10:17 AM Ticket #4072 (ValueError after closing one session and opening another) closed by pett
duplicate: Now in ticket #4074

Dec 20, 2020:

11:49 PM Ticket #4076 (Bug report with bug-reporter failure(!)) created by chimerax-bug-report@…
[…]

Dec 18, 2020:

10:01 PM Ticket #4075 (Error saving tool position of stacked tool) created by Tony Schaefer
[…]
7:30 PM Ticket #4074 (ValueError after closing one session and opening another) created by asiegel@…
[…]
6:14 PM Ticket #4073 (Need reliable linking for python C++ modules using libarrays) created by Tom Goddard
About 35 modules of ChimeraX have C++ code that uses the arrays module …
3:29 PM Ticket #4072 (ValueError after closing one session and opening another) created by asiegel@…
[…]
12:54 PM Ticket #4065 (Opening .nc file: No module named 'Scientific') closed by Tom Goddard
fixed: Fixed netcdf map reader. It was never ported from Chimera 1 and was …
11:44 AM Ticket #4071 (Sphinx doesn't like indentation of some code comments) created by Tom Goddard
Make install in docs/devel is issuing warnings from Sphinx that …
11:31 AM Ticket #4070 (Error in save error message) closed by pett
duplicate
11:17 AM Ticket #4070 (Error in save error message) created by chimerax-bug-report@…
[…]
10:22 AM Ticket #4069 (Toolshed using internal UI API) closed by pett
duplicate
1:55 AM Ticket #4069 (Toolshed using internal UI API) created by chimerax-bug-report@…
[…]

Dec 17, 2020:

9:27 PM Ticket #4066 (Meeting name case sensitive) closed by Tom Goddard
fixed: Fixed. New code that checks a joiners initial message to make sure …
7:38 PM 2020-12-17 edited by Tom Goddard
(diff)
6:40 PM Ticket #4068 (Programmer documentation missing atomic and map_data classes) created by Tom Goddard
Lots of ChimeraX APIs such as Atoms are Atom are not in the …
4:18 PM NeteSOW edited by Tom Goddard
(diff)
2:21 PM NeteSOW edited by Elaine Meng
(diff)
12:15 PM Ticket #3716 (Error within error message) closed by Greg Couch
duplicate: Duplicate of #3896.
12:14 PM Ticket #3874 (Error in error message reinstalling bundle) closed by Greg Couch
duplicate: Duplicate of #3896
11:18 AM 2020-12-17 edited by Elaine Meng
(diff)
11:18 AM 2020-12-17 edited by Elaine Meng
(diff)
11:09 AM Ticket #4067 (ChimeraX distribution is too big, over 1 Gbyte uncompressed) created by Tom Goddard
We need to look into trimming ChimeraX bloat. It is absolutely …
9:43 AM Ticket #4066 (Meeting name case sensitive) created by goddard@…
[…]
9:26 AM Ticket #4064 (Opening .nc file: No module named 'Scientific') closed by pett
duplicate: Duplicate of #4065
9:18 AM 2020-12-17 edited by Elaine Meng
(diff)
2:29 AM Ticket #4065 (Opening .nc file: No module named 'Scientific') created by ammirabileelena@…
[…]
2:24 AM Ticket #4064 (Opening .nc file: No module named 'Scientific') created by chimerax-bug-report@…
[…]

Dec 16, 2020:

11:26 AM Ticket #4060 (VR meeting: LZ4F_decompress failed with code: ERROR_frameSize_wrong) closed by Tom Goddard
can't reproduce: I think we can only wait and see if this error occurs again. Phil, …
11:20 AM Ticket #4062 (Toolshed using internal UI API) closed by Greg Couch
duplicate: Fixed in daily build. Duplicate of #3905.
11:18 AM Ticket #4061 (Coulombic: local variable 'cmap' referenced before assignment) closed by pett
fixed
10:49 AM Ticket #4063 (Selection: Attempt to call an undefined function glBlitFramebuffer) closed by Tom Goddard
can't reproduce: I don't think this error message about not finding the standard OpenGL …
10:40 AM Ticket #4059 (Crash popping up menu, two screens, macOS) closed by Tom Goddard
duplicate: Duplicate. Supposedly fixed in Qt 5.15.2 which we updated to two days …
9:53 AM Ticket #4063 (Selection: Attempt to call an undefined function glBlitFramebuffer) created by seabra@…
[…] 5F19_-_WT_-_minimized_-_All.pdb
9:38 AM Ticket #4057 (Toolshed using internal UI API) closed by pett
duplicate
9:00 AM Ticket #4062 (Toolshed using internal UI API) created by slange001@…
[…]
7:04 AM Ticket #4061 (Coulombic: local variable 'cmap' referenced before assignment) created by chimerax-bug-report@…
[…]
6:23 AM Ticket #4060 (VR meeting: LZ4F_decompress failed with code: ERROR_frameSize_wrong) created by phil.cruz@…
[…]

Dec 15, 2020:

10:26 PM Ticket #4059 (Crash popping up menu, two screens, macOS) created by chimerax-bug-report@…
[…]
6:53 PM Ticket #4058 (Volume Viewer: RuntimeWarning: overflow encountered in log) closed by Tom Goddard
fixed: Fixed. I changed the volume viewer code to use float64 for counts …
5:41 PM Ticket #4058 (Volume Viewer: RuntimeWarning: overflow encountered in log) created by goddard@…
[…]
4:36 PM Ticket #4057 (Toolshed using internal UI API) created by chimerax-bug-report@…
[…]
3:40 PM Ticket #3974 (Something broke in the PBD look up) closed by pett
can't reproduce: Are you certain that there isn't some other output file from Robetta …
12:47 PM 2020-12-17 edited by Tom Ferrin
(diff)
10:15 AM 2020-12-17 created by Tom Goddard
10:11 AM DeveloperMeetings edited by Tom Goddard
(diff)
9:24 AM Ticket #4056 (Toolshed internal UI API) closed by pett
duplicate: Already fixed I believe.
8:06 AM Ticket #4056 (Toolshed internal UI API) created by chimerax-bug-report@…
[…]

Dec 14, 2020:

4:32 PM Ticket #3853 (Bug in chimeraX 1.1 version) closed by Greg Couch
can't reproduce: No response from request for more information.
3:06 PM Ticket #4055 (Problem with open-command providers after bundle reinstall) created by Tony Schaefer
[…]
3:00 PM Ticket #4010 (Adding second residue to Chain makes new Chain) closed by pett
fixed: Apparently already fixed in the daily build. However, the daily build …
1:47 PM Ticket #4054 (Cannot make a tool undockable) closed by Tom Goddard
fixed: Fixed. Bug introduced when converting PyQt5 to PySide2. Dockable and …
1:26 PM Ticket #4052 (Crash destroying/disconnecting screen) closed by Tom Goddard
duplicate: Crash when second screen disconnected. I guess ChimeraX was on an …
1:22 PM Ticket #4050 (Crash changing screens) closed by Tom Goddard
duplicate: Duplicate of #3682. Fixed in daily builds.
12:46 PM Ticket #4054 (Cannot make a tool undockable) created by Tony Schaefer
[…]
12:02 PM Ticket #3383 (Redirect Python logging to the ChimeraX log) closed by pett
fixed: Removed the explicit (and less flexible) support for Python logging …
11:36 AM Ticket #4049 (Crash posting popup menu on dual monitor) closed by pett
can't reproduce

Dec 13, 2020:

1:55 AM Ticket #4053 (ISOLDE: _change_selected_model: Spgr_descr: No such HM symbol) created by chimerax-bug-report@…
[…]

Dec 12, 2020:

4:38 PM Ticket #4052 (Crash destroying/disconnecting screen) created by susan.lea@…
[…]
2:22 PM WikiStart edited by Tom Goddard
(diff)
2:19 PM WikiStart edited by Tom Goddard
(diff)
2:18 PM WikiStart edited by Tom Goddard
(diff)
2:18 PM Funding created by Tom Goddard
10:47 AM Ticket #4051 (Open imod contours: TypeError: int expected instead of float) closed by Tom Goddard
fixed: Fixed. Code tried to set contour link color using float rgba instead …
10:44 AM Ticket #4051 (Open imod contours: TypeError: int expected instead of float) created by goddard@…
[…]
2:38 AM Ticket #4050 (Crash changing screens) created by chimerax-bug-report@…
[…]

Dec 11, 2020:

9:20 PM Ticket #4049 (Crash posting popup menu on dual monitor) created by chimerax-bug-report@…
[…]
6:47 PM Ticket #4048 (Replace PyOpenGL with Qt OpenGL API) created by Tom Goddard
Might want to drop PyOpenGL and call OpenGL functions through PySide2. …
5:18 PM Ticket #4027 (AddH wheel on Toolshed won't install: wheel filename has py38 instead ...) closed by pett
fixed: The AddH wheel is now just "py3".
5:14 PM Ticket #4047 (Crash while garbage collecting during object allocation) closed by pett
duplicate: Duplicate of #3949
5:00 PM Ticket #3986 (Volume Viewer step/style menus only accept press in middle macOS, Qt 5.15) closed by Tom Goddard
fixed: Fixed. Removed setting style sheet on volume view step and style menu …
2:16 PM Ticket #3946 (Make OpenFileNameArg check that file exists) closed by pett
fixed: The various open/save arg types now have a 'check_existence' class …
12:57 PM Ticket #4047 (Crash while garbage collecting during object allocation) created by chimerax-bug-report@…
[…]
12:02 PM Ticket #4046 (Toolshed error in "already installed" error message) closed by pett
duplicate: Hi Brian, Thanks for reporting this problem. The Toolshed is trying …
11:56 AM Ticket #4046 (Toolshed error in "already installed" error message) created by ba553@…
[…]
10:11 AM Ticket #4044 (MemoryError restoring map from session) closed by Tom Goddard
nonchimerax: Out of memory. Not sure if you are showing a huge structure or if you …
10:06 AM Ticket #4043 (Graphics hardware encountered an error and was reset) closed by Tom Goddard
nonchimerax: Buggy Apple graphics driver: "Graphics hardware encountered an error …
9:49 AM Ticket #4045 (Toolshed error in "already installed" error message) closed by pett
duplicate
9:40 AM Ticket #4042 (Crash while garbage collecting during object allocation) closed by pett
duplicate: Duplicate of #3949
5:26 AM Ticket #4045 (Toolshed error in "already installed" error message) created by chimerax-bug-report@…
[…]
2:06 AM Ticket #4044 (MemoryError restoring map from session) created by anaschwarzer@…
[…]
1:53 AM Ticket #4043 (Graphics hardware encountered an error and was reset) created by raobing2015@…
[…]

Dec 10, 2020:

8:38 PM Ticket #4042 (Crash while garbage collecting during object allocation) created by chimerax-bug-report@…
[…]
8:33 PM Ticket #1635 (Replace PyQt5 with PySide2) closed by Tom Goddard
fixed: Done. The switch to PySide2 was done a weeks ago in daily builds and …
8:10 PM Ticket #3760 (Startup warning: Unable to load numpy_formathandler accelerator from ...) reopened by Tom Goddard
On Windows binary wheel for PyOpenGL-accelerate for Python 3.8 is …
7:40 PM 2020-12-10 edited by Tom Goddard
(diff)
7:38 PM 2020-12-10 edited by Tom Goddard
(diff)
12:06 PM Ticket #4041 ("sel" specifier vs. "select" keyword) created by Tristan Croll
[…]
11:43 AM Ticket #4040 (Crash in QtWebEngineCore) created by rsarsam@…
[…]
11:18 AM Ticket #4033 (AddH not installable into ChimeraX 1.1 due to "py38" in wheel name) closed by pett
fixed
11:15 AM Ticket #4037 (Could not find a version that satisfies the requirement ...) closed by pett
fixed: Hi Michael, Thanks for reporting this problem. We believe it is …
10:56 AM Ticket #4039 (Splash screen crash report that was not a crash) closed by Tom Goddard
can't reproduce: The Python traceback is when calling sess.ui.splash_info("Starting …
10:41 AM Ticket #4039 (Splash screen crash report that was not a crash) created by goddard@…
[…]
10:28 AM 2020-12-10 edited by Tom Goddard
(diff)
10:25 AM 2020-12-10 created by Tom Goddard
10:19 AM DeveloperMeetings edited by Tom Goddard
(diff)
9:52 AM Ticket #4038 (ISOLDE: OpenMM: residue_graph: edges should be a n x 2 array of ...) closed by pett
duplicate: Duplicate of #4016
5:26 AM Ticket #4038 (ISOLDE: OpenMM: residue_graph: edges should be a n x 2 array of ...) created by chimerax-bug-report@…
[…]
3:45 AM Ticket #4037 (Could not find a version that satisfies the requirement ...) created by weberm@…
[…]

Dec 9, 2020:

6:14 PM Ticket #3383 (Redirect Python logging to the ChimeraX log) reopened by pett
From an email by Tom Goddard: ChimeraX startup is currently showing …
5:40 PM Ticket #3760 (Startup warning: Unable to load numpy_formathandler accelerator from ...) closed by Tom Goddard
fixed: Fixed. PyOpenGL-accelerate only compiles the numpy_formathandler …
1:37 PM Ticket #4036 (crash in set_alt_loc) closed by pett
fixed: One of the set_alt_loc() routines hadn't been marked up as capable of …
12:29 PM Ticket #4036 (crash in set_alt_loc) created by chimerax-bug-report@…
[…]

Dec 8, 2020:

7:42 PM Ticket #4035 (Problem installing ISOLDE) created by mh5416@…
[…]
7:34 PM Ticket #3898 (Toolshed Python 3.8 bundle won't install in Python 3.7) closed by Greg Couch
fixed
6:55 PM Ticket #4034 (Error adding tool in favorites menu, PySide2 issue) closed by Tom Goddard
fixed: Fixed. Some code to handle PySide2 QAction signal argument …
6:48 PM Ticket #4034 (Error adding tool in favorites menu, PySide2 issue) created by goddard@…
[…]
5:20 PM Ticket #4032 ("toolshed install" not allowing upgrade) closed by Greg Couch
fixed: The fix is the same as #3996. "toolshed install" used to need the …
2:53 PM Ticket #4029 (glClear: invalid enumerant) closed by Tom Goddard
nonchimerax: This error is likely a bad graphics driver. Possibly your machine …
2:28 PM Ticket #4030 (Crash in graphics driver) closed by Tom Goddard
nonchimerax: Apple graphics driver bug. "Graphics hardware encountered an error …
2:27 PM Ticket #4028 (Crash in shader / graphics driver) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash. "Graphics hardware encountered an …
1:15 PM Ticket #4033 (AddH not installable into ChimeraX 1.1 due to "py38" in wheel name) created by chimerax-bug-report@…
[…]
1:13 PM Ticket #4031 (self.main_window is None) closed by pett
can't reproduce: Probably the "topLevelChanged" signal fired after the tool was …
11:45 AM Ticket #4032 ("toolshed install" not allowing upgrade) created by pett
[…]
9:58 AM Ticket #4013 (macOS daily build, "developer can't be verified", even though ...) closed by Tom Goddard
fixed: Fixed. New PySide2 releases may add or remove external non-system …
8:44 AM Ticket #4031 (self.main_window is None) created by chimerax-bug-report@…
[…]
8:12 AM Ticket #4030 (Crash in graphics driver) created by chimerax-bug-report@…
[…]
5:55 AM Ticket #4029 (glClear: invalid enumerant) created by yael.sivron@…
[…]

Dec 7, 2020:

5:57 PM Ticket #4028 (Crash in shader / graphics driver) created by chimerax-bug-report@…
[…]
5:51 PM Ticket #4026 (Contour level mouse mode: UnboundLocalError: local variable 'levels') closed by Tom Goddard
fixed: Fixed. Volume was shown but surface and image models were …
5:36 PM Ticket #4025 (macOS: Graphics hardware encountered an error) closed by Tom Goddard
nonchimerax: Apple graphics driver bug.
5:35 PM Ticket #4024 (macOS: Graphics hardware encountered an error) closed by Tom Goddard
nonchimerax: Apple graphics driver bug.
6:22 AM Ticket #4027 (AddH wheel on Toolshed won't install: wheel filename has py38 instead ...) created by Tristan Croll
[…]

Dec 6, 2020:

11:25 AM Ticket #4026 (Contour level mouse mode: UnboundLocalError: local variable 'levels') created by chimerax-bug-report@…
[…]

Dec 5, 2020:

6:26 PM Ticket #4025 (macOS: Graphics hardware encountered an error) created by chimerax-bug-report@…
[…]
6:20 PM Ticket #4024 (macOS: Graphics hardware encountered an error) created by chimerax-bug-report@…
[…]
7:05 AM Ticket #4023 (Better error handling on web service failure) created by chimerax-bug-report@…
[…]

Dec 4, 2020:

8:00 PM Ticket #4022 (Testing crash reporting on Linux) closed by Tom Goddard
fixed: Working.
7:57 PM Ticket #4022 (Testing crash reporting on Linux) created by goddard@…
[…]
7:49 PM Ticket #4021 (Testing crash reporting on Windows) closed by Tom Goddard
fixed: Works. Will be interesting to see how many crashes get reported on …
7:46 PM Ticket #4021 (Testing crash reporting on Windows) created by goddard@…
[…]
7:33 PM Ticket #4020 (Testing adding python tracebacks to crash reports) closed by Tom Goddard
fixed: Python tracebacks in crash report working on Mac.
7:30 PM Ticket #4020 (Testing adding python tracebacks to crash reports) created by goddard@…
[…]
11:06 AM Ticket #4019 (Allow surface and mesh levels in Volume Viewer) created by daniel.larsson@…
On 4 Dec 2020, at 15:08, Daniel Larsson wrote: Hi Elaine, Thank you …
9:03 AM Ticket #4017 (Crash showing tooltip) closed by pett
can't reproduce
8:57 AM Ticket #4014 (ISOLDE installed but not Clipper dependency) closed by pett
duplicate: Duplicate of #4015
6:10 AM Ticket #4018 (ISOLDE: OpenMM: find_glycan_template_name_and_link: multiple bonds ...) created by kartik.manne@…
[…]
6:09 AM Ticket #4017 (Crash showing tooltip) created by chimerax-bug-report@…
[…]
4:12 AM Ticket #4016 (ISOLDE: OpenMM: residue_graph: edges should be a n x 2 array of ...) created by chimerax-bug-report@…
[…]
3:53 AM Ticket #4015 (ISOLDE installed but not Clipper dependency) created by l.loeff@…
[…]
3:52 AM Ticket #4014 (ISOLDE installed but not Clipper dependency) created by chimerax-bug-report@…
[…]

Dec 3, 2020:

4:09 PM Ticket #4013 (macOS daily build, "developer can't be verified", even though ...) created by goddard@…
[…] Screen Shot 2020-12-03 at 4.06.17 PM.png
2:24 PM Ticket #4012 (Error restoring session with embedded maps; text-color issue in bug ...) created by grahamj@…
[…] withMaps.cxs
2:23 PM 2020-12-3 edited by Tom Goddard
(diff)
2:22 PM 2020-12-3 edited by Tom Goddard
(diff)
1:50 PM Ticket #4011 (add ability to update bundle metadata of bundles in toolshed) created by Greg Couch
When a bundle on the toolshed has incorrect dependencies, eg., …
1:05 PM 2020-12-3 edited by Scooter Morris
(diff)
1:04 PM 2020-12-3 edited by Scooter Morris
(diff)
1:01 PM 2020-12-3 edited by Scooter Morris
(diff)
12:55 PM 2020-12-3 edited by Scooter Morris
(diff)
12:54 PM 2020-12-3 edited by Scooter Morris
(diff)
11:02 AM Ticket #3984 (ViewDockX: Uncaught TypeError) closed by pett
fixed: Was trying to scroll to show the top active row, and in this case …
10:58 AM NeteSOW edited by Tom Goddard
(diff)
9:36 AM 2020-12-3 edited by Tom Goddard
(diff)
9:36 AM 2020-12-3 edited by Tom Goddard
(diff)
9:03 AM Ticket #4009 (Double click open of mmCIF fails on Linux) closed by pett
fixed: Good ol' Linux. I have committed a fix/workaround -- which I can't …
7:13 AM Ticket #4010 (Adding second residue to Chain makes new Chain) created by daniel.palma.i@…
[…] pseudobond_test.py

Dec 2, 2020:

9:46 PM 2020-12-3 edited by Tom Goddard
(diff)
9:27 PM Ticket #4009 (Double click open of mmCIF fails on Linux) created by goddard@…
[…]
8:53 PM 2020-12-3 created by Tom Goddard
8:48 PM DeveloperMeetings edited by Tom Goddard
(diff)
6:25 PM Ticket #4008 (Unable to install bundle with mdtraj (source code package) dependency) created by jacknicoludis@…
[…]
9:20 AM Ticket #4006 (AddH: can't form new hydrogen name) closed by pett
duplicate: Duplicate of #2717
7:56 AM Ticket #4007 (RFE: sym command "replace true" or "keepOriginal false" option) created by Elaine Meng
Would like option that modifies "copies true" to also close the …
7:32 AM Ticket #4006 (AddH: can't form new hydrogen name) created by chimerax-bug-report@…
[…]
2:48 AM Ticket #4005 ('Alignment' object has no attribute '_headers') created by zhaozhennan15@…
[…]

Dec 1, 2020:

7:20 PM Ticket #3997 (Change sym command default to avoid confusing graphical clones) closed by Tom Goddard
fixed: Fixed. Default for copies option is now true for 12 or fewer copies …
6:55 PM Ticket #4004 (sym command copies true option ignored if newModel true option used) closed by Tom Goddard
fixed: Fixed. Not sure why the code mishandled this case. Must have been …
6:51 PM Ticket #4004 (sym command copies true option ignored if newModel true option used) created by goddard@…
[…]
5:30 PM Ticket #3990 (EnumOf using values instead of labels in error message) closed by Greg Couch
fixed: Fixed the error message to use the ids.
5:03 PM Ticket #3993 (issue with AtomicShapeDrawing.add_shape) closed by Greg Couch
fixed: FYI, if you are adding lots of shapes, it is much more efficient to …
4:39 PM Ticket #3996 (PyPi dependencies not installed by "devel install".) closed by Greg Couch
fixed: Make it so both the bundle's name *and* its version have to be the …
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1:28 PM Ticket #4003 (OpenMM OpenCL crash on Mac in Intel graphics driver) created by chimerax-bug-report@…
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11:19 AM Ticket #4002 (LZ4 compression instead of gzip for maps in session files) closed by Tom Goddard
fixed: Fixed. Made maps included in sessions not compressed. Overall …
10:37 AM Ticket #4001 (Don't base64 encode maps in session files) closed by Tom Goddard
fixed: Fixed. Session reading handles both base64 encoded older sessions and …
10:34 AM Ticket #4002 (LZ4 compression instead of gzip for maps in session files) created by goddard@…
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10:30 AM Ticket #4001 (Don't base64 encode maps in session files) created by goddard@…
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Nov 30, 2020:

9:47 PM Ticket #4000 (SEQCROW uses deprecated PyQt5 imports) created by goddard@…
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6:40 PM Ticket #3999 (Toolshed offers to install ISOLDE for wrong Python version then fails) created by goddard@…
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6:37 PM Ticket #3998 (TEMPy does not start with ChimeraX 1.1) reopened by Tom Goddard
Accidentally set this to fixed. It is not fixed until a new version …
6:34 PM Ticket #3998 (TEMPy does not start with ChimeraX 1.1) closed by Tom Goddard
fixed: Thomas Mulvaney says TEMPy does not work in anything newer than …
6:25 PM Ticket #3998 (TEMPy does not start with ChimeraX 1.1) created by goddard@…
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5:22 PM Ticket #3383 (Redirect Python logging to the ChimeraX log) closed by pett
fixed: Okay, standard Python logging now redirected. Mostly used the …
3:44 PM Ticket #3992 (vr roomCamera: CompositorError_TextureUsesUnsupportedFormat) closed by Tom Goddard
can't reproduce: Cool to see someone is trying VR with a RealSense camera I guess to …
3:25 PM Ticket #3936 (Hybrid36 issues) closed by pett
fixed: Hi Chris, Thanks for reporting this problem. Before Hybrid-36 was …
2:54 PM Ticket #3997 (Change sym command default to avoid confusing graphical clones) created by Tom Goddard
As Elaine points out and user Yakhomba experienced the sym command …
2:36 PM Ticket #3996 (PyPi dependencies not installed by "devel install".) created by mulvaney@…
Command devel install of a bundle does not install PyPi dependencies …
11:36 AM Ticket #3995 (MemoryError writing compressed session) closed by Tom Goddard
nonchimerax: The ChimeraX error messages you ran out of memory saving a session. …
11:20 AM Ticket #3995 (MemoryError writing compressed session) created by anaschwarzer@…
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9:44 AM Ticket #3991 (temp file collision) closed by pett
fixed: Hi Tristan, This has been fixed for about 2.5 months now, but it's …

Nov 29, 2020:

4:27 PM Ticket #3994 (Crash in timer callback) created by nzhang24@…
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Nov 28, 2020:

12:01 AM Ticket #3993 (issue with AtomicShapeDrawing.add_shape) created by Tony Schaefer
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Note: See TracTimeline for information about the timeline view.