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Timeline
May 1, 2017:
- 5:15 PM Ticket #649 (bundle specification of open/save arg UI) created by
- Our current scheme of registering keywords needs to be expanded …
- 4:40 PM Ticket #648 (consider pop-up text explaining Log click-to-execute links) closed by
- fixed: I implemented the request, though I capitalized the first letter of …
- 3:11 PM Ticket #648 (consider pop-up text explaining Log click-to-execute links) created by
- This is an idea rather than a demand.... maybe the click-to-execute …
- 2:23 PM Ticket #647 (save-restore session compressed two models into one) created by
- open 1zik open 1zik.pb open 1zik move y 10 mod #3 open 1zik2.pb ... …
- 1:52 PM Ticket #646 (consider whether file-history should remember coordset status) created by
- If I open something as a trajectory, this status is not retained in …
- 1:44 PM Ticket #645 (mouse over crosslinks histogram of closed structure causes traceback) created by
- More along the lines of idiot-proofing. Need to close histogram when …
- 1:33 PM Ticket #644 (mouse over crosslink ensemble histogram gives IndexError) created by
- Example: open 5ml1 format pdb coord t (select one pseudobond) crossl …
Apr 27, 2017:
Apr 24, 2017:
- 2:37 PM Ticket #623 (Move selected core bundles to toolshed) closed by
- duplicate: Duplicate of #621
- 2:35 PM Ticket #624 (Session format: test msgpack as an alternative to pickle) closed by
- duplicate: Duplicate of #611
Apr 21, 2017:
- 3:27 PM Ticket #643 (chimerax not starting) created by
- […]
- 3:13 PM Ticket #642 (OpenMM bug) created by
- […]
- 2:00 PM Ticket #641 (Restoring session with atomic model fails) closed by
- fixed
Apr 20, 2017:
- 7:36 PM Ticket #640 (Rapid access file history can slow startup checking if files exist) closed by
- fixed: I made file history not check for deleted files at start-up. …
- 7:05 PM Ticket #641 (Restoring session with atomic model fails) created by
- open 1a0m save test.cxs close open test.cxs Unable to restore …
- 6:00 PM Ticket #640 (Rapid access file history can slow startup checking if files exist) created by
- The current file history code checks all the files in the history to …
- 1:30 PM Ticket #639 (atomspec model ordering not used in matrixcopy between multiple models) closed by
- fixed: Fixed. Model argument parsing was not preserving order with TopModelsArg.
- 10:57 AM Ticket #637 (Toolshed: missing 'logger' arg) closed by
- fixed: Fixed in 89f6694. Pass in logger to …
- 9:20 AM Ticket #639 (atomspec model ordering not used in matrixcopy between multiple models) created by
- This may be the same problem as an atomspec ordering ticket, but I was …
- 4:26 AM Ticket #638 (Linux OpenBLAS library threading problems) created by
- This came up a while back, and I have the below workaround defined in …
Apr 19, 2017:
- 3:39 PM Ticket #637 (Toolshed: missing 'logger' arg) created by
- In toolshed/info.py on line 653, the call to _get_api() is missing the …
Apr 18, 2017:
- 12:22 PM Ticket #635 (silhouettes don't work right in orthographic) closed by
- fixed: Fixed. The silhouette edge depth jump test was assuming perspective …
- 11:25 AM Ticket #636 (Side View does not renormalize) created by
- Maybe "renormalize" is not the right word, but what I mean is that it …
- 10:30 AM Ticket #635 (silhouettes don't work right in orthographic) created by
- With silhouettes + camera ortho, the outlines for depth jumps …
Apr 17, 2017:
- 2:15 PM Ticket #384 (problem dealing with microheterogeneity) closed by
- fixed: Changed code to delete the "microheterogeneity" residues instead of …
- 11:28 AM Ticket #634 ("windowsize" as first command after starting ChimeraX does not work) created by
- Apparently resizes the whole window to that size, instead of the …
Apr 14, 2017:
- 1:07 PM Ticket #631 (Crossfade wrong on retina MacBook Pro 2012, 2x scaling problem) closed by
- fixed: Fixed.
Apr 13, 2017:
- 5:37 PM Ticket #619 (Bug reporting lite) closed by
- fixed
- 5:14 PM Ticket #633 (Status messages cause havoc by running event loop) created by
- To get status messages to appear we run the Qt event loop when the …
- 12:50 PM Ticket #632 (2d label improvements) created by
- 1) Most important feature to make 2d labels more usable is a mouse …
- 9:22 AM Ticket #631 (Crossfade wrong on retina MacBook Pro 2012, 2x scaling problem) created by
- When crossfading to hide one of two superposed models crossfade 100 …
Apr 11, 2017:
- 2:52 PM Ticket #627 (Atom deleted during atoms.radii lookup) closed by
- fixed: Fixed. Needed to clear destruction-batcher variables earlier to clear …
- 12:04 PM Ticket #629 (Drawing.display not saved/restored in session) closed by
- fixed: Fixed. Whether models are displayed was not being saved in sessions.
- 11:48 AM Ticket #630 (Add "position" command) created by
- The "view initial", "view matrix" and "view position" subcommands are …
Apr 10, 2017:
- 7:37 PM Ticket #629 (Drawing.display not saved/restored in session) created by
- As per summary. Open 1mtx; turn off 'shown' for first three models in …
- 2:47 PM Ticket #606 ("close" in this session quits ChimeraX) closed by
- fixed
- 2:32 PM Ticket #628 (Graphical selection not working; other usage problems) closed by
- not a bug: I guess you mean you want to display the rest of the atoms. You can …
Apr 8, 2017:
- 1:47 PM Ticket #552 (cartoon 4y7j crashes ChimeraX) closed by
- fixed: Fixed in 2b58710. The last fragment in chain D are …
Apr 7, 2017:
- 6:15 PM Ticket #628 (Graphical selection not working; other usage problems) created by
- […]
- 2:47 PM Ticket #627 (Atom deleted during atoms.radii lookup) created by
- Loading exosome.ihm (attached) loads several mmCIF files and generates …
- 5:50 AM Ticket #626 (If a volume is selected in the Models panel, Density Map Toolbar ...) created by
- At present, restricting the display buttons to act on one volume …
Apr 6, 2017:
- 1:39 PM 2017-04-06 edited by
- (diff)
- 1:39 PM Ticket #625 (Status messages during draw causes OpenGL error) created by
- Event processing during status message display appears to change the …
- 1:09 PM Ticket #593 (Save orthographic camera settings in session) closed by
- fixed: Done
- 12:08 PM 2017-04-06 created by
- 12:07 PM Ticket #471 (Commands executed twice) closed by
- fixed: Keyboard forwarding happened twice.
- 12:05 PM Ticket #613 (Add support for find hbonds) closed by
- duplicate
- 12:01 PM Ticket #549 (Mac middle mouse drag: QNSView mouseDragged: Internal mouse button ...) closed by
- fixed: Fixed by Qt update
- 11:58 AM Ticket #554 (Ribbon: RuntimeWarning: invalid value encountered in less d[d < ...) closed by
- fixed: Got rid of NaN in ribbon coordinates
- 11:51 AM Ticket #575 (Status line message causes OpenGL error) closed by
- fixed: Fixed by not sending status messages during redraw. Status message …
- 11:47 AM Ticket #577 (Bug in Python 3.6) closed by
- fixed
- 11:39 AM Ticket #587 (Chimera1/X matchmaker difference) closed by
- not a bug
- 11:21 AM Ticket #592 (Image save 2x smaller region on Mac OS 10.9.5) closed by
- wontfix: Mac OS X 10.9 is not supported
- 11:07 AM DeveloperMeetings edited by
- (diff)
- 8:22 AM 2017-03-30 edited by
- (diff)
- 8:15 AM 2017-03-30 edited by
- (diff)
- 8:14 AM Ticket #624 (Session format: test msgpack as an alternative to pickle) created by
- 8:12 AM Ticket #610 (Session format: test msgpack as an alternative to pickle) closed by
- invalid
- 7:26 AM 2017-03-30 edited by
- (diff)
- 7:23 AM Ticket #623 (Move selected core bundles to toolshed) created by
- 7:21 AM Ticket #622 (Develop protocol for releasing standard bundles onto toolshed) created by
- Moving parts of core out to bundles is a separate task
- 7:20 AM Ticket #621 (Core bundle refactoring) created by
- Tracking ticket for moving bundles from the core to the toolshed
- 7:19 AM Ticket #620 (Create initial bundle development example with documentation) created by
- As we get closer to beta, we're going to need to start releasing more …
- 7:17 AM Ticket #619 (Bug reporting lite) created by
- For the alpha releases, we don't want to implement a full bug …
- 7:15 AM Ticket #618 (ChimeraX bug reporting) created by
- ChimeraX needs the capability to report bugs back to us. This is a …
- 7:13 AM Ticket #617 (Registration support) created by
- 7:12 AM Ticket #616 (Add support for distance measurements) created by
- 7:11 AM Ticket #615 (Add support for 3d labels) created by
- 7:11 AM Ticket #614 (Add support for zones and attributes in atom spec) created by
- 7:10 AM Ticket #613 (Add support for find hbonds) created by
- 7:08 AM Ticket #612 (Session format: identify missing components in session files) created by
- Session files are currently incomplete (e.g. 2dLabels aren't saved). …
- 7:06 AM Ticket #611 (Session format: compare performance of msgpack vs. pickle) created by
- Once we have a msgpack session implementation, we need to compare the …
- 7:02 AM Ticket #610 (Session format: test msgpack as an alternative to pickle) created by
- 7:01 AM Ticket #609 (Session format decisions for alpha2) created by
- For alpha2, we need to get closer to the final session format. This …
Apr 5, 2017:
- 12:17 PM Ticket #608 (Cheshire cat silhouettes) closed by
- duplicate: Duplicate of #596.
- 10:20 AM Ticket #608 (Cheshire cat silhouettes) created by
- Sometimes silhouette edges are still drawn after all models are hidden.
- 10:06 AM Ticket #607 (Make silhouette edges transparent for movie fades) created by
- Begin forwarded message: From: Elaine Meng <meng@…> …
Apr 4, 2017:
- 12:15 PM Ticket #606 ("close" in this session quits ChimeraX) created by
- opening the attached session, entering command "close" causes ChimeraX …
- 11:49 AM Ticket #605 (testing notifications) closed by
- not a bug
- 11:42 AM Ticket #605 (testing notifications) created by
- test
Apr 3, 2017:
- 5:17 PM Ticket #604 (traceback trying to morph 3 structures (session attached)) closed by
- fixed: Fixed. The morph corkscrew interpolation code caused an error in the …
- 4:50 PM Ticket #604 (traceback trying to morph 3 structures (session attached)) created by
- As shown in the Log contents below, with the attached session I can …
- 3:33 PM Ticket #603 (Add support for display chain sequences) created by
- 3:32 PM Ticket #602 (Need user interface to be able to choose window configuration) created by
- per summary
- 3:29 PM Ticket #601 (Add ability to write PDB) created by
- 7:21 AM Ticket #600 (Model.metadata does not contain cell information for model from an ...) created by
- Making adjustments to the Clipper plugin to provide live-scrolling …
- 4:32 AM Ticket #599 ("Transplanting" a model loses track of children) created by
- Hi all, I'm trying to do some rearrangements of my data handling for …
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