Opened 9 years ago

Closed 8 years ago

#600 closed defect (fixed)

Model.metadata does not contain cell information for model from an mmCIF file

Reported by: Tristan Croll Owned by: Greg Couch
Priority: major Milestone:
Component: Higher-Order Structure Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

Making adjustments to the Clipper plugin to provide live-scrolling coordinate symmetry without the data from an MTZ file. Easy enough to pull out the CRYST1 card from Model.metadata for a model loaded from a PDB file, but the equivalent information from an mmCIF (_cell.* and _symmetry.*) doesn't appear to be available. If m is an mmCIF AtomicStructure:

m.metadata.keys()

Out: dict_keys(['chain_entity_map', 'entity', 'entity data', 'entity_src_gen', 'entity_src_gen data', 'pdbx_struct_assembly', 'pdbx_struct_assembly data', 'pdbx_struct_assembly_gen', 'pdbx_struct_assembly_gen data'])

Change History (2)

comment:1 by Conrad Huang, 9 years ago

Component: Unassigned → Higher-Order Structure
Owner: set to Greg Couch
Status: new → assigned

comment:2 by Greg Couch, 8 years ago

Resolution: → fixed
Status: assigned → closed

Next successful build will have "cell" and "symmetry" metadata.

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