![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Dec 5, 2016:
- 5:59 PM Ticket #299 (Ability to add tool-specific keywords to open command) closed by
- fixed: Done. Added to metadata.
- 2:36 PM Ticket #499 (Error at startup on Linux) closed by
- fixed: Should be fixed.
- 2:21 PM Ticket #492 (Log help links broken) closed by
- fixed
- 12:55 PM 2016-12-01 edited by
- (diff)
- 12:54 PM 2016-12-01 edited by
- (diff)
- 12:48 PM Ticket #499 (Error at startup on Linux) created by
- ChimeraX gives the following error on startup on Ubuntu 16.04 LTS. $ …
- 12:31 PM Ticket #498 (blank atomspecs cause errors) created by
- If the atomspec is blank, none of the special color names (byhet, …
- 12:04 PM Ticket #497 (Using tug atoms or ISOLDE on Mac cannot find OpenMM CPU platform) closed by
- fixed: Fixed tug atoms to set OPENMM_PLUGINS_DIR on Mac. Tristan, you will …
- 11:58 AM Ticket #497 (Using tug atoms or ISOLDE on Mac cannot find OpenMM CPU platform) created by
- OpenMM can only find the reference platform on Mac when using ISOLDE …
- 11:20 AM Ticket #496 (Toolshed does not indicate if tool was successfully installed) created by
- Pressing the Download button on the ISOLDE toolshed entry gives no …
- 11:17 AM Ticket #495 (Toolshed cannot install tool, write permission error) created by
- The Mac ChimeraX installs in /Applications as root and toolshed cannot …
- 7:46 AM Ticket #494 (Dropping one floating window into another and then tearing it away ...) created by
- […]
Dec 1, 2016:
- 5:20 PM 2016-12-01 edited by
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- 2:47 PM 2016-12-01 edited by
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- 2:45 PM 2016-12-01 edited by
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- 2:42 PM 2016-12-01 edited by
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- 2:37 PM 2016-12-01 edited by
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- 2:13 PM DeveloperMeetings edited by
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- 2:13 PM 2016-12-01 created by
- 12:52 PM Ticket #493 (measure phi/psi/chi/omega angles) created by
- Add Chimera1-like support for getting/setting phi/psi/chi/omega …
Nov 30, 2016:
- 2:51 PM Ticket #492 (Log help links broken) created by
- Recent changes to HTML scheme handling have broken help links in the log.
- 10:25 AM Ticket #491 (Crash closing side view and opening shell) created by
- Crash on Linux after showing side view, then closing side view, then …
- 12:43 AM Ticket #490 (Alias with missing argument gives cryptic error) closed by
- fixed: Fixed error message.
Nov 29, 2016:
- 5:13 PM Ticket #490 (Alias with missing argument gives cryptic error) created by
- Using an alias without an argument gives a cryptic error message. It …
- 5:10 PM Ticket #487 (error trying to use perframe with alias) closed by
- invalid: This won't work because perframe knows nothing about expanding …
- 2:01 PM Ticket #489 (Don't show clipping caps for near/far clip planes.) created by
- Might want to not compute clipping caps for near/far clip planes. The …
- 1:50 PM Ticket #488 (Model panel view button should not enable clip planes) created by
- The Model Panel View button currently enables near/far clip plane as …
Nov 28, 2016:
- 4:37 PM Ticket #487 (error trying to use perframe with alias) created by
- Maybe it's user error, but I can't get my first perframe example in …
- 12:46 PM Ticket #486 (Blast Protein GUI won't run) created by
- Although I could run blast via command, showing the Blast Protein GUI, …
Nov 23, 2016:
- 5:32 PM Ticket #485 (Want collada export with hierarchy) created by
- Sam Hertig was exporting scenes from Chimera 1 using Collada for …
- 2:57 PM 2016-11-14 edited by
- (diff)
- 11:04 AM Ticket #461 (Ribbons don't update when coordinate set changes) closed by
- fixed: Fixed.
Nov 21, 2016:
- 7:25 PM Ticket #484 (Make contact graph mouse button behavior match graphics window (select ...) created by
- Currently contact graph ctrl-left and right mouse button presses bring …
- 7:19 PM Ticket #483 (Smart display should use different colors for chains) created by
- Opening 4hhb (and other molecules with < 5) chains causes all the …
- 7:14 PM Ticket #482 (Contact graph hide/show chains ignores ribbons) created by
- Clicking on a contact graph chain node is supposed to hide the other …
- 5:18 PM 2016-11-14 edited by
- (diff)
- 2:16 PM FAI edited by
- (diff)
- 1:12 PM Ticket #481 (struts ignoring pbonds and accumulating inappropriately) closed by
- fixed: Fixed. Main problem was that backbone atoms hidden by ribbon were not …
- 10:22 AM Ticket #481 (struts ignoring pbonds and accumulating inappropriately) created by
- The "struts" command calculation is not paying attention to displayed …
Nov 17, 2016:
- 5:32 PM Ticket #479 (select sequence option also selected waters) closed by
- fixed: Fixed. Code saw the two waters in 1i50 chain K and decided all the …
- 4:02 PM Ticket #480 (maybe add "entity" (same molecular entity) operator to atomspecs) created by
- A sequence option was recently added to the "select" command and it is …
- 3:57 PM Ticket #479 (select sequence option also selected waters) created by
- open 1i50 select sequence /k ...shouldn't that only select the …
- 3:06 PM Ticket #478 (showing contacts residue plot broken today) closed by
- fixed: Fixed typo.
- 2:19 PM Ticket #478 (showing contacts residue plot broken today) created by
- After using "contacts", choosing any edge-context menu's "Residue …
Nov 16, 2016:
- 11:29 PM Ticket #472 (ChimeraX "open" command format-specification issues) closed by
- fixed: Part A was fixed by getting the fetch code to use the data format's …
- 6:10 PM Ticket #477 (cartoon: some tube-coil joins not so hot) created by
- Some of the tube-helix to coil junctions are pretty poor, e.g. 1a0s …
- 3:56 PM Ticket #239 (File... Save GUI save image adds ".cxs" before image suffix) closed by
- fixed: Must be dyslexic. Added logging the filename when saving an image via …
Nov 15, 2016:
- 4:56 PM Ticket #476 (Command history dialog appears at startup) created by
- The first time ChimeraX run after it is installed for the first time …
- 4:38 PM 2016-11-14 edited by
- (diff)
- 4:38 PM Ticket #447 (Transparency command on volumes undone when contour level changes) closed by
- fixed: Fixed
- 2:47 PM 2016-11-14 edited by
- (diff)
- 2:47 PM Ticket #449 (Volume planes on multiple data display is erratic) closed by
- wontfix: There are only 58 z planes in this data. So the command volume …
- 1:52 PM 2016-11-14 edited by
- (diff)
- 1:52 PM 2016-11-14 edited by
- (diff)
- 1:40 PM Ticket #327 (Log stops updating beyond 2 Mbyte size) closed by
- fixed: Conrad put in code to work around this that saves the log to a …
- 1:35 PM 2016-11-14 edited by
- (diff)
- 1:31 PM Ticket #49 (Better warning message if oculus fails to start) closed by
- fixed: Fixed.
- 11:58 AM Ticket #475 (crazy tube helices after dssp on 4hhb) created by
- open 4hhb rainbow dssp cartoon style modeh tube (the rainbow isn’t …
- 11:42 AM Ticket #474 ("save session filename" (no suffix) gives traceback) closed by
- fixed: Fixed.
- 11:29 AM Ticket #474 ("save session filename" (no suffix) gives traceback) created by
- As I understand it there are 3 ways to specify saving a session: save …
- 10:48 AM 2016-11-14 edited by
- (diff)
Nov 14, 2016:
- 5:38 PM Ticket #437 (OpenMM hangs and uses all system memory, tug atom mouse mode) closed by
- fixed: Hangs occur when simulation goes unstable in OpenMM. Tristan adapted …
- 5:36 PM Ticket #436 (Tool setup.py cannot register multiple extensions for file format) closed by
- fixed: Eric reports this is fixed.
- 5:35 PM Ticket #305 (RFE: connect to pyMLP, molecular lipophilicity potential evaluator) closed by
- fixed: Optimized about 6 months ago.
- 5:34 PM Ticket #287 (Image save shortcut, use different file names) closed by
- fixed: Done a year or more ago.
- 5:34 PM Ticket #233 (Does not start first time run on Mac) closed by
- worksforme: Have not observed this for at least 6 months.
- 5:33 PM Ticket #197 (testing2) closed by
- invalid
- 5:33 PM Ticket #119 (Put build scripts in chimera2 git repository) closed by
- fixed: Build scripts moved to their own repository.
- 5:32 PM Ticket #117 (Linux daily builds gives wx errors on startup) closed by
- invalid: Replaced wx with qt.
- 5:31 PM Ticket #93 (Drag and drop panel gives an error) closed by
- invalid: Wx has been replaced by Qt.
- 5:31 PM Ticket #64 (Multitouch trackpad support) closed by
- duplicate: Duplicate of #427. Toolkit is now Qt.
- 5:30 PM Ticket #53 (Make space navigator support a tool instead of in core) closed by
- fixed: Done.
- 5:29 PM Ticket #52 (Make oculus support a tool instead of in core) closed by
- fixed: Done.
- 5:29 PM Ticket #51 (Find oculus display more reliably) closed by
- invalid: VR toolkits now use direct rendering rather than extended display.
- 5:29 PM Ticket #70 (log tool doesn't cleanup when deleted) closed by
- fixed: The log is now session enduring (and has been for awhile).
- 5:28 PM Ticket #50 (Make oculus window full screen) closed by
- wontfix: VR toolkits now use direct rendering, not windows on extended display.
- 5:27 PM Ticket #20 (Sessions and Scenes Master Ticket) closed by
- duplicate: No longer using "master" tickets. Now use specific tickets for each issue.
- 5:26 PM Ticket #6 (Multitouch translation with two finger drag) closed by
- duplicate
- 5:25 PM Ticket #13 (Oculus rift refinements) closed by
- fixed: These features are now handled by the Oculus SDK.
- 5:24 PM Ticket #14 (Optimize saving STL surface files) closed by
- fixed: Done about a year ago.
- 5:23 PM Ticket #18 (3D Graphics Master Ticket) closed by
- duplicate: No longer using "master" tickets. Instead use individual tickets for …
- 5:23 PM Ticket #19 (User Interface Master Ticket) closed by
- duplicate: No longer using "master" tickets. Instead use individual tickets for …
- 5:22 PM Ticket #22 (ToolShed Master Ticket) closed by
- duplicate: No longer using "master" tickets. Instead use individual tickets for …
- 5:22 PM Ticket #23 (Help System Master Ticket) closed by
- duplicate: No longer using "master" tickets. Instead use individual tickets for …
- 5:22 PM Ticket #24 (TaskManager/Web Services Master Ticket) closed by
- duplicate: No longer using "master" tickets. Instead use individual tickets for …
- 5:21 PM Ticket #25 (Build System Master Ticket) closed by
- duplicate: No longer using "master" tickets. Instead use individual tickets for …
- 5:21 PM Ticket #26 (Sequence Data Master Ticket) closed by
- duplicate: No longer using "master" tickets. Instead use individual tickets for …
- 5:21 PM Ticket #27 (Volume Data Master Ticket) closed by
- duplicate: No longer using "master" tickets. Instead use individual tickets for …
- 5:20 PM Ticket #30 (Test Framework Master Ticket) closed by
- duplicate: No longer using "master" tickets. Instead use individual tickets for …
- 5:20 PM Ticket #33 (Volume Viewer Master Ticket) closed by
- duplicate: No longer using "master" tickets. Instead use individual tickets for …
- 5:20 PM Ticket #34 (Sequence Viewer Master Ticket) closed by
- duplicate: No longer using "master" tickets. Instead use individual tickets for …
- 5:19 PM Ticket #35 (mmCIF Reader Master Ticket) closed by
- duplicate: No longer using "master" tickets. Instead use individual tickets for …
- 5:19 PM Ticket #37 (Surfaces Master Ticket) closed by
- duplicate: No longer using "master" tickets. Instead use individual tickets for …
- 5:16 PM 2016-11-14 edited by
- (diff)
- 5:16 PM 2016-11-14 created by
- 5:14 PM Ticket #115 (Linux daily build does not include libwebkitgtk-1.0) closed by
- duplicate: Superceded by ticket #473.
- 5:14 PM Ticket #114 (Linux daily build does not include libjpeg62) closed by
- duplicate: Superceded by ticket #473.
- 5:10 PM Ticket #473 (Create Linux installer and distribute necessary system libraries) created by
- Need a linux installer for ChimeraX alpha release. Should include …
- 4:40 PM DeveloperMeetings edited by
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- 4:33 PM DeveloperMeetings edited by
- (diff)
- 4:30 PM DeveloperMeetings2015 created by
- 4:26 PM DeveloperMeetings2014 created by
- 3:01 PM Ticket #462 (Rename open command explode option to "trajectory") closed by
- fixed: Fixed.
- 2:17 PM Ticket #172 (specifying surface model wrongly specifies its enclosed atoms) closed by
- fixed
- 2:15 PM Ticket #167 (volume color option rgba(r,g,b,a) does not work) closed by
- fixed
- 2:02 PM Ticket #332 (cannot save session) closed by
- fixed: menu uses save command.
- 1:56 PM FAI edited by
- (diff)
- 1:54 PM FAI edited by
- (diff)
- 1:53 PM FAI edited by
- (diff)
- 12:25 PM 2016-11-10 edited by
- (diff)
- 12:00 AM Milestone Core API Complete completed
Nov 10, 2016:
- 2:58 PM 2016-11-10 created by
- 2:14 PM DeveloperMeetings edited by
- (diff)
- 11:42 AM Ticket #436 (Tool setup.py cannot register multiple extensions for file format) reopened by
- Despite the fact that the setup.py.in for the alignments bundle …
- 9:02 AM Ticket #472 (ChimeraX "open" command format-specification issues) created by
- (A) how to specify mmtf is inconsistent from the other fetch formats. …
Nov 9, 2016:
- 4:51 PM Ticket #468 (sop zone doesn't work on non-square mesh) closed by
- fixed: Fixed. Special code to handle this case was ignoring the triangle mask.
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