Opened 12 years ago

Closed 9 years ago

#26 closed defect (duplicate)

Sequence Data Master Ticket

Reported by: Scooter Morris Owned by: Eric Pettersen
Priority: blocker Milestone: Core API Complete
Component: Sequence Version:
Keywords: Cc: chimera-programmers
Blocked By: Blocking:
Notify when closed: Platform: all
Project: chimera

Description


Change History (3)

comment:1 by Tom Goddard, 12 years ago

Does "sequence data" include representations for sequence alignments? I think many tools will need sequence alignments, so perhaps they should be in the core rather than in MultiAlign Viewer. For example MatchMaker, BlastPDB, MultiDomain Assembler, MAV, Uniprot Annotations, all need sequence alignment data structures.

comment:2 by Eric Pettersen, 11 years ago

In conjunction with Molecular Data ticket, am implementing pseudobond groups, in order to have the Sequence-necessary "missing structure" group, as well as the less-obviously-necessary "metal coordination" group. The latter is necessary in order to tell if atoms have their valences full when trying to place the missing-structure pseudobond.

I had two different types of per-Molecule pseudobond groups, "global" ones and per-CoordSet ones, with a manager for each, and while I still do have two I've decided to only have one manager that creates different types of groups based on a constructor keyword.

comment:3 by Tom Goddard, 9 years ago

Resolution: → duplicate
Status: new → closed

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