![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Jan 21, 2021:
- 2:03 PM 2021-1-21 edited by
- (diff)
- 2:02 PM 2021-1-21 edited by
- (diff)
- 2:00 PM 2021-1-21 edited by
- (diff)
- 1:57 PM 2021-1-21 edited by
- (diff)
- 1:56 PM Ticket #4157 (Bad electron count) created by
- […]
- 1:36 PM Ticket #4156 (Deleting atom twice) created by
- […]
- 1:23 PM Ticket #4155 (Crash setting up menubar when going full screen) created by
- […]
- 1:22 PM Ticket #4154 (Attempt to show dead dialog) created by
- […]
- 1:08 PM Ticket #4150 (Coulombic failure) closed by
- fixed: Coulombic knew that Amber calls NH2 NHE. AddCharge didn't. Now it does.
- 12:44 PM Ticket #4153 (Crash with dual displays) created by
- […]
- 11:27 AM 2021-1-21 edited by
- (diff)
- 11:19 AM 2021-1-21 edited by
- (diff)
- 11:14 AM 2021-1-21 edited by
- (diff)
- 11:13 AM 2021-1-21 edited by
- (diff)
- 11:11 AM 2021-1-21 edited by
- (diff)
- 10:50 AM 2021-1-21 edited by
- (diff)
- 10:38 AM 2021-1-21 created by
- 10:36 AM DeveloperMeetings edited by
- (diff)
- 10:27 AM Ticket #4152 (alt loc starting values) created by
- […]
- 9:57 AM Ticket #4151 (struct_edit.add_bond trying to '+' Residues collections) closed by
- fixed: You are right that it is fixed in the daily build, but I don't …
- 8:42 AM Ticket #4151 (struct_edit.add_bond trying to '+' Residues collections) created by
- […]
Jan 20, 2021:
- 10:26 PM Ticket #2853 (Windows build should not require pre-installed Python) closed by
- fixed: Switched to Python 3.8.7. Used the "make_win_distribution" target in …
- 5:45 PM ChangeLog edited by
- (diff)
- 5:45 PM ChangeLog edited by
- (diff)
- 2:48 PM Ticket #4150 (Coulombic failure) created by
- […]
- 2:37 PM Ticket #4149 (Binary installation of AmberTools) created by
- Since installing AmberTools20 requires not only the installation of …
- 11:55 AM Ticket #4146 (DataDir not included in bundle) closed by
- fixed: Ignore the top-level DataDir thing, I was confused. That tag is only …
- 9:07 AM Ticket #4148 (Toolshed using internal UI API) closed by
- duplicate: Hi Yashar, Thanks for reporting this problem. It is harmless, so you …
- 9:03 AM Ticket #4147 (Toolshed using internal UI API) closed by
- duplicate
- 8:18 AM Ticket #4148 (Toolshed using internal UI API) created by
- […]
Jan 19, 2021:
- 6:12 PM Ticket #4144 (Bad info from RCSB when querying blast results) closed by
- fixed: An infrequently used part of the blast-results parsing code was …
- 4:37 PM Ticket #4139 (Crash calculating H-bonds) closed by
- fixed: Recent changes to change notifications were buggy for pseudobonds and …
- 2:24 PM Ticket #4147 (Toolshed using internal UI API) created by
- […]
- 1:55 PM Ticket #3216 (open/save need to be aware of uninstalled formats) closed by
- fixed
- 1:22 PM Ticket #4146 (DataDir not included in bundle) created by
- […] themes_DataDir.zip
- 11:12 AM Ticket #4142 (Crash in QtWebEngineCore in updateDirtyNodes()) closed by
- can't reproduce: There have been 15 ChimeraX bug reports of this crash in the Qt …
- 10:40 AM Ticket #4145 (Floating point 'increment' not allowed in "volume planes" command ...) closed by
- fixed: Fixed in tonight's ChimeraX daily build. Thanks for the detailed bug …
- 10:25 AM Ticket #4143 (Windows crash at startup showing rapid access) closed by
- can't reproduce: This Windows crash is during ChimeraX startup. The splash screen has …
- 9:59 AM Ticket #4141 (Crash in QtWebEngineCore) closed by
- can't reproduce
- 9:54 AM Ticket #4140 (wrapped C/C++ object of type ChainMenuButton has been deleted) closed by
- duplicate: Hi Ziyi, Thanks for reporting this problem. It has been fixed in the …
- 8:46 AM Ticket #4145 (Floating point 'increment' not allowed in "volume planes" command ...) created by
- […] planes_bug.cxc
- 6:40 AM Ticket #4144 (Bad info from RCSB when querying blast results) created by
- […]
Jan 18, 2021:
Jan 17, 2021:
- 10:28 PM Ticket #4142 (Crash in QtWebEngineCore in updateDirtyNodes()) created by
- […]
- 12:27 PM Ticket #4141 (Crash in QtWebEngineCore) created by
- […]
- 10:15 AM Ticket #4140 (wrapped C/C++ object of type ChainMenuButton has been deleted) created by
- […] ATR-Mec1 Alignment.cxs
Jan 15, 2021:
- 3:24 PM Ticket #4139 (Crash calculating H-bonds) created by
- […]
- 11:01 AM Ticket #4138 (Crash while removing screen) closed by
- duplicate: Duplicate of #3682, supposedly fixed in ChimeraX daily build by Qt …
- 10:58 AM Ticket #4137 (Graphics hardware encountered an error and was reset) closed by
- nonchimerax: The usual Apple Intel graphics driver crash, this one while resizing a …
- 7:26 AM Ticket #4138 (Crash while removing screen) created by
- […]
- 1:30 AM Ticket #4137 (Graphics hardware encountered an error and was reset) created by
- […]
Jan 14, 2021:
- 3:39 PM NeteSOW edited by
- (diff)
- 3:22 PM 2021-1-14 edited by
- (diff)
- 3:21 PM 2021-1-14 edited by
- (diff)
- 3:21 PM 2021-1-14 edited by
- (diff)
- 2:10 PM NeteSOW edited by
- (diff)
- 2:09 PM NeteSOW edited by
- (diff)
- 1:46 PM NeteSOW edited by
- (diff)
- 1:25 PM NeteSOW edited by
- (diff)
- 1:18 PM NeteSOW edited by
- (diff)
- 1:14 PM NeteSOW edited by
- (diff)
- 9:49 AM Ticket #4136 (Crash in QOpenGLContext.create() on Windows) closed by
- can't reproduce: Very nice! The Python traceback shows Windows ChimeraX can crash in …
Jan 13, 2021:
- 7:09 PM 2021-1-14 edited by
- (diff)
- 7:02 PM Ticket #4136 (Crash in QOpenGLContext.create() on Windows) created by
- […]
- 6:00 PM Ticket #4134 (Modeller job fault / server error) closed by
- duplicate: Duplicate of #4135
- 5:32 PM Ticket #3596 (Implement Coulombic surface coloring) closed by
- fixed: Coulombic now also handles non-standard residues (only on Mac right …
- 3:33 PM Ticket #4135 (Modeller job fault / server error) created by
- […]
- 3:25 PM Ticket #4134 (Modeller job fault / server error) created by
- […]
- 2:23 PM 2021-1-14 edited by
- (diff)
- 1:37 PM 2021-1-14 edited by
- (diff)
- 10:37 AM Ticket #4133 (Graphics is white) closed by
- nonchimerax: Probably your graphics driver is not adequate. The Qt window toolkit …
- 10:34 AM Ticket #4131 (Graphics hardware encountered an error and was reset) closed by
- nonchimerax: Usual Apple Intel graphics driver crash.
- 7:51 AM Ticket #4133 (Graphics is white) created by
- […]
- 1:54 AM Ticket #4132 (Build fails "no such option: --extra-index-url") closed by
- fixed
Jan 12, 2021:
- 9:18 PM Ticket #4132 (Build fails "no such option: --extra-index-url") created by
- Looks like your change to handling of ChimeraX.exe options broke the …
- 9:05 PM Ticket #4130 (Enable offscreen rendering on macOS) closed by
- fixed: Made new prereqs/osmesa that can install libOSmesa for Mac or Linux. …
- 7:42 PM Ticket #4131 (Graphics hardware encountered an error and was reset) created by
- […]
- 4:20 PM Ticket #4130 (Enable offscreen rendering on macOS) created by
- Provide OSMesa in macOS ChimeraX builds for offscreen rendering with …
- 1:48 PM Ticket #4127 (atomic_lib compilation warning "ChimeraX_main.py: option -I not recognized") closed by
- fixed: Changed ChimeraX's sys.argv parsing to recognize all Python options. …
- 11:07 AM Ticket #4129 (macOS notarization fails, lxml wheel uses pre-macOS 10.9) closed by
- fixed: Reverted to pip installing lxml from source code on macOS.
- 11:03 AM Ticket #4129 (macOS notarization fails, lxml wheel uses pre-macOS 10.9) created by
- Job: cac3f9f4-947d-4e93-8b04-bff3827e316f Status: Invalid Summary: …
- 10:47 AM 2021-1-14 created by
- 10:43 AM DeveloperMeetings edited by
- (diff)
- 9:42 AM Ticket #4128 (save JPEG with transparent background: cannot write mode RGBA as JPEG) closed by
- duplicate: Fixed (only) in the daily build.
Jan 11, 2021:
- 5:16 PM Ticket #4128 (save JPEG with transparent background: cannot write mode RGBA as JPEG) created by
- […]
- 3:42 PM Ticket #4127 (atomic_lib compilation warning "ChimeraX_main.py: option -I not recognized") created by
- make install on atomic_lib on macOS 10.15 gives strange warnings about …
- 9:26 AM Ticket #4126 (Execution of 'Structure' object's 'atoms' property raised AttributeError) closed by
- can't reproduce
Jan 9, 2021:
Jan 8, 2021:
- 5:56 PM Ticket #4124 (sequences from structure chains not closed when structure closed) closed by
- fixed: With delattr moved from Cython to Python, needed to also make …
- 5:08 PM Ticket #4123 (sequence selection region stays when structure is closed) closed by
- fixed: Deleting structures with selections in them wasn't firing 'selection …
- 4:34 PM Ticket #4121 (Surface cap not transparent) closed by
- fixed: Fixed. I made coloring the a volume surface or changing its …
- 4:30 PM Ticket #4125 (Command argument quoting not working for single quotes) created by
- […]
- 1:26 PM Ticket #4124 (sequences from structure chains not closed when structure closed) created by
- e.g. open 1www seq chain /Y close Also same problem for …
- 1:25 PM Ticket #4123 (sequence selection region stays when structure is closed) created by
- open uniprot:cah1_human open 1bzm .... select with mouse on structure, …
- 8:51 AM Ticket #4122 (End of simulation: 'PositionRestraintMgr' object has no attribute ...) created by
- […]
- 5:03 AM Ticket #4121 (Surface cap not transparent) created by
- […] Screenshot_1.png
Jan 7, 2021:
- 8:49 PM WikiStart edited by
- (diff)
- 8:48 PM WikiStart edited by
- (diff)
- 8:46 PM WikiStart edited by
- (diff)
- 8:43 PM WikiStart edited by
- (diff)
- 8:42 PM WikiStart edited by
- (diff)
- 8:41 PM WikiStart edited by
- (diff)
- 8:39 PM WikiStart edited by
- (diff)
- 8:38 PM WikiStart edited by
- (diff)
- 8:37 PM WikiStart edited by
- (diff)
- 8:35 PM WikiStart edited by
- (diff)
- 8:26 PM WikiStart edited by
- (diff)
- 8:23 PM WikiStart edited by
- (diff)
- 8:21 PM WikiStart edited by
- (diff)
- 8:11 PM WikiStart edited by
- (diff)
- 8:05 PM Ticket #4120 (Support PySide2 and PyQt5 with a shim qt module) created by
- At Jan 7, 2021 group meeting we decided to look into using the …
- 7:51 PM Ticket #4119 (Migrate from Qt 5 to Qt 6) created by
- Qt 6.0 was released in December of 2020 although some modules were not …
- 5:27 PM WikiStart edited by
- (diff)
- 5:12 PM Ticket #4095 (VR initialization failure) closed by
- nonchimerax: Gabriel was able to get Oculus Rift working with ChimeraX.
- 5:10 PM Ticket #4118 (Add offscreen rendering support for macOS using XQuartz libOSMesa.dylib) closed by
- wontfix: Unfortunately XQuartz was last updated in 2016 and the …
- 5:07 PM Ticket #4118 (Add offscreen rendering support for macOS using XQuartz libOSMesa.dylib) created by
- Would be nice to have offscreen rendering when using ChimeraX as a …
- 5:01 PM Ticket #4117 (Chimera documentation mistakenly used with ChimeraX) closed by
- not a bug
- 4:53 PM 2021-1-7 edited by
- (diff)
- 2:21 PM 2021-1-7 edited by
- (diff)
- 2:19 PM 2021-1-7 edited by
- (diff)
- 2:16 PM 2021-1-7 edited by
- (diff)
- 1:43 PM Ticket #4117 (Chimera documentation mistakenly used with ChimeraX) created by
- […] Untitled.png
- 10:59 AM Ticket #4116 (prevent duplicate pending bundle submissions) created by
- When a pending bundle submission is made with the same name and …
- 10:59 AM Ticket #4114 (Crash in garbage collection during new-object allocation) closed by
- can't reproduce
- 10:55 AM Ticket #4113 (Toolshed using internal UI API) closed by
- duplicate
- 10:28 AM Ticket #4115 (Crash in garbage collection during new-object allocation) created by
- […]
- 2:03 AM Ticket #4114 (Crash in garbage collection during new-object allocation) created by
- […]
Jan 6, 2021:
- 10:43 PM Ticket #4113 (Toolshed using internal UI API) created by
- […]
- 6:45 PM 2021-1-7 edited by
- (diff)
- 6:43 PM 2021-1-7 edited by
- (diff)
- 5:41 PM 2021-1-7 edited by
- (diff)
- 3:16 PM Ticket #4112 (swapaa may be using probability as dominant criterion) closed by
- not a bug: You have to supply "ignoreOtherModels true" to the swapaa command. …
- 12:59 PM Ticket #4112 (swapaa may be using probability as dominant criterion) created by
- unless I am confused. Here is the example: open 6pt2 del /B,D hide …
- 10:59 AM 2021-1-7 edited by
- (diff)
- 10:56 AM 2021-1-7 created by
- 10:53 AM WikiStart edited by
- (diff)
- 10:52 AM DeveloperMeetings edited by
- (diff)
- 10:51 AM DeveloperMeetings edited by
- (diff)
Jan 5, 2021:
- 9:35 PM Ticket #4111 (Cannot install Maestro file reader from Toolshed on macOS Big Sur) closed by
- fixed: Version 1.8.1 of the maestro bundle, with the fixed dependency, is on …
- 4:54 PM Ticket #4111 (Cannot install Maestro file reader from Toolshed on macOS Big Sur) created by
- […]
- 11:38 AM Ticket #4105 (Amber Solvate not responding) closed by
- nonchimerax: Hi Sam, Since the solvation tool in Amber is designed to be used in …
- 11:25 AM Ticket #4110 (Crash performing @selector(onOkClicked)) created by
- […]
- 11:06 AM Ticket #4108 (Log chain table selection selects nothing) closed by
- fixed: Chain-selection table entry now handles circular permutations.
- 9:13 AM Ticket #4109 (Save dialog: 'SaveModelOptionWidget' object has no attribute '_name') closed by
- duplicate: Hi Ryan, Thanks for reporting this problem. It has been fixed in the …
- 4:30 AM Ticket #4109 (Save dialog: 'SaveModelOptionWidget' object has no attribute '_name') created by
- […]
Jan 4, 2021:
- 6:56 PM Ticket #4108 (Log chain table selection selects nothing) created by
- […]
- 5:12 PM Ticket #4103 ('Ribbon' object has no attribute '_flip_mode') closed by
- fixed: You are using old ChimeraX version 0.93. The current version is …
- 4:48 PM Ticket #4099 (No matching residues in matchmaker sequence alignment) closed by
- fixed: When adding the code to show the RMSD header in the alignment, managed …
- 3:20 PM Ticket #4107 (Toolshed offers to install bundle that requires core<=1.1 in ChimeraX ...) created by
- […]
- 3:11 PM Ticket #4106 (Toolshed install of StrudelScore fails, apparently wheel file has ...) created by
- […]
- 3:07 PM Ticket #4100 (glUniformMatrix4fv: invalid operation) closed by
- can't reproduce: This was an OpenGL graphics error in glUniformMatrix4fv (Invalid …
- 2:20 PM Ticket #4104 (Toolshed error in "already installed" message) closed by
- duplicate: Duplicate of #3795
- 1:37 PM Ticket #4105 (Amber Solvate not responding) created by
- […]
- 1:32 PM Ticket #4104 (Toolshed error in "already installed" message) created by
- […]
- 1:31 PM Ticket #4103 ('Ribbon' object has no attribute '_flip_mode') created by
- […]
- 10:08 AM Ticket #4102 (Excessive logging of already satisfied dependencies) created by
- […]
- 9:31 AM Ticket #3929 (Added NH2 saved after TER) closed by
- not a bug: Presumably the same as #3892; fixed by using struct_edit.add_bond() in …
- 9:30 AM Ticket #3892 (chain merge not reordering residues) closed by
- not a bug: Ah. I have now added text to various doc strings to mention using …
Dec 31, 2020:
- 4:23 PM ChangeLog edited by
- (diff)
- 2:17 PM Ticket #4101 (Problem downloading ChimeraX: "The URL you used has expired") created by
- […]
- 1:25 PM Ticket #4100 (glUniformMatrix4fv: invalid operation) created by
- […]
- 11:57 AM Ticket #4098 (Session file not recognized) closed by
- not a bug: Turns out the extension should have been .cxc
- 4:20 AM Ticket #4099 (No matching residues in matchmaker sequence alignment) created by
- […]
Dec 30, 2020:
- 5:08 PM Ticket #3055 (Add ParmEd to ChimeraX's standard bundles) closed by
- fixed: Installed ParmEd as a prereq. It adds 4.6M to the distribution (on Mac).
- 4:25 PM Ticket #4084 (Wrong numpy parsing in Coulombic C++ module) closed by
- fixed: Thanks, have fixed that up. I found the documentation in the various …
- 9:58 AM Ticket #4098 (Session file not recognized) created by
- […]
- 9:44 AM Ticket #4097 (Error in error message reinstalling bundle) closed by
- duplicate
- 8:22 AM Ticket #4097 (Error in error message reinstalling bundle) created by
- […]
Dec 29, 2020:
Dec 28, 2020:
- 5:34 PM Ticket #4095 (VR initialization failure) created by
- […]
- 4:00 PM Ticket #4091 (Python shell autocomplete: _queue.Empty) closed by
- fixed: ipython implicitly relies on the 'jedi' module for auto-completion, …
- 3:57 PM Ticket #4094 (Python shell autocomplete: _queue.Empty) closed by
- duplicate: Duplicate of #4091; adding Tom to recipient list for that ticket
- 12:58 PM Ticket #4094 (Python shell autocomplete: _queue.Empty) created by
- […]
- 10:24 AM 2020-12-17 edited by
- (diff)
- 9:37 AM Ticket #4092 (Toolshed using internal UI API) closed by
- duplicate
- 9:34 AM Ticket #4090 (Toolshed using internal UI API) closed by
- duplicate
- 9:32 AM Ticket #4089 (Nucleotides: point is None) closed by
- duplicate: I believe this was fixed awhile ago.
- 9:29 AM Ticket #4088 (Crash moving window) closed by
- can't reproduce
- 6:56 AM Ticket #4093 (OpenMM crash uploading OpenCL array) created by
- […]
- 12:06 AM Ticket #4092 (Toolshed using internal UI API) created by
- […]
Dec 27, 2020:
Dec 26, 2020:
- 7:15 PM Ticket #4090 (Toolshed using internal UI API) created by
- […]
- 12:03 PM Ticket #4089 (Nucleotides: point is None) created by
- […]
Dec 23, 2020:
- 8:00 PM Ticket #4088 (Crash moving window) created by
- […]
- 5:45 PM Ticket #4087 (Wide tool can nuke graphics window) created by
- Opening the attached alignment on the right side of the main window …
- 5:20 PM Ticket #4075 (Error saving tool position of stacked tool) closed by
- fixed: Fixed. PyQt returned an int for which side the tool was on, whereas …
- 10:12 AM Ticket #4086 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) closed by
- fixed: Hi Roberto, Thanks for reporting this problem. It has been fixed in …
- 2:53 AM Ticket #4086 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) created by
- […]
Dec 22, 2020:
- 10:03 PM Ticket #4085 (Webcam command broken by pyside2) created by
- […]
- 10:00 PM Ticket #4068 (Programmer documentation missing atomic and map_data classes) closed by
- fixed: Fixed. Took out the LD_LIBRARY_PATH fix that allowed Sphinx to import …
- 9:54 PM Ticket #4073 (Need reliable linking for python C++ modules using libarrays) closed by
- fixed: Fixed. Made all 21 C++ Python modules that depend on libarrays call …
- 6:18 PM Ticket #4084 (Wrong numpy parsing in Coulombic C++ module) created by
- The code in Coulombic esp.cpp in potential_at_points() for parsing …
- 4:16 PM Ticket #4080 (drag-select rectangle invisible on gray background) closed by
- fixed: Fixed. Made the selection drag box always green against any …
- 1:01 PM Ticket #4083 (need some way to see association when model color is white) created by
- If the model color is white and I associate it with a sequence, you …
- 11:55 AM Ticket #4082 (over-selection when clicking feature regions in Sequence Viewer) closed by
- fixed: The code to form a "concise residue spec" from a set of residues was wrong.
- 10:21 AM ChangeLog edited by
- (diff)
- 10:01 AM Ticket #4079 (Crash rendering scene graph) closed by
- can't reproduce
- 9:14 AM Ticket #4082 (over-selection when clicking feature regions in Sequence Viewer) created by
- open uniprot:pdcd1_human open 3bp5 sequence associate /A pdcd1_human …
- 8:38 AM Ticket #4081 (Sequence Viewer assoc dialog incorrectly says not associated) created by
- Opening the attached cxc file fetches uniprot sequences and associates …
- 8:30 AM Ticket #4080 (drag-select rectangle invisible on gray background) created by
- The drag-select rectangle shows as a green line against black …
- 12:15 AM Ticket #4079 (Crash rendering scene graph) created by
- […]
Note:
See TracTimeline
for information about the timeline view.
