Opened 5 years ago

Closed 5 years ago

#4126 closed defect (can't reproduce)

Execution of 'Structure' object's 'atoms' property raised AttributeError

Reported by: chimerax-bug-report@… Owned by: pett
Priority: normal Milestone:
Component: Structure Analysis Version: 0.91
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description (last modified by pett)

The following bug report has been submitted:
Platform:        Windows-10-10.0.19041
ChimeraX Version: 0.91 (2019-08-20)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 0.91 (2019-08-20)  
© 2016-2019 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open G:/1HNU/yaolab/GFP/1top_preds/2+1/2+1-3.pdb

Summary of feedback from opening G:/1HNU/yaolab/GFP/1top_preds/2+1/2+1-3.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK Accelrys Discovery Studio PDB file  
  
Ignored bad PDB record found on line 2  
REMARK Created: 2021-01-10T08:22:51Z  
  
Chain information for 2+1-3.pdb #1  
---  
Chain | Description  
A | No description available  
X | No description available  
  

> rainbow

> set bgColor white

> lighting soft

> lighting full

> lighting flat

> lighting soft

> lighting soft

> lighting full

> lighting flat

> lighting simple

Unknown image file format "png image"  
Unknown image file format "png image"  
Unknown image file format "png image"  
Unknown image file format "png image"  

> save image G:/1HNU/yaolab/GFP/1top_preds/2+1/2+1-3.png width 1341 height 834

> close session

> open G:/1HNU/yaolab/t7nie/lys.pdb

Summary of feedback from opening G:/1HNU/yaolab/t7nie/lys.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK Accelrys Discovery Studio PDB file  
  
Ignored bad PDB record found on line 2  
REMARK Created: 2021-01-10T12:30:28Z  
  
Chain information for lys.pdb #1  
---  
Chain | Description  
X | No description available  
  

> open G:/1HNU/yaolab/t7nie/linker.pdb

Summary of feedback from opening G:/1HNU/yaolab/t7nie/linker.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK Accelrys Discovery Studio PDB file  
  
Ignored bad PDB record found on line 2  
REMARK Created: 2021-01-10T12:31:32Z  
  
Chain information for linker.pdb #2  
---  
Chain | Description  
X | No description available  
  

> open G:/1HNU/yaolab/t7nie/thbmdt7.pdb

Summary of feedback from opening G:/1HNU/yaolab/t7nie/thbmdt7.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK Accelrys Discovery Studio PDB file  
  
Ignored bad PDB record found on line 2  
REMARK Created: 2021-01-10T12:32:05Z  
  
Chain information for thbmdt7.pdb #3  
---  
Chain | Description  
X | No description available  
  

> select #1/X

2377 atoms, 2404 bonds, 1 model selected  

> show sel atoms

> hide sel atoms

> show sel surfaces

> select #3/X

13774 atoms, 13929 bonds, 1 model selected  

> show sel surfaces

> lighting soft

> select clear

> select #2/X:168

7 atoms, 6 bonds, 1 model selected  

> undo

> undo

> select #2

421 atoms, 421 bonds, 1 model selected  

> ~select #2

Nothing selected  

> select #2

421 atoms, 421 bonds, 1 model selected  

> ~select #2

Nothing selected  

> select #2

421 atoms, 421 bonds, 1 model selected  

> ~select #2

Nothing selected  

> select clear

> preset "initial styles" "space-filling (chain colors)"

Preset implemented in Python; no expansion to individual ChimeraX commands
available.  

> redo

> ui favorite true "Model Panel"

> hide sel surfaces

> lighting soft

> mlp sel

Map values for surface "linker.pdb_X SES surface": minimum -23.21, mean
-7.147, maximum 19.78  

> close session

> open "G:\\\1HNU\\\yaolab\\\t7nie\\\lys.pdb"

Summary of feedback from opening G:\1HNU\yaolab\t7nie\lys.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK Accelrys Discovery Studio PDB file  
  
Ignored bad PDB record found on line 2  
REMARK Created: 2021-01-10T12:30:28Z  
  
Chain information for lys.pdb #1  
---  
Chain | Description  
X | No description available  
  

> open G:/1HNU/yaolab/t7nie/thbmdt7.pdb

Summary of feedback from opening G:/1HNU/yaolab/t7nie/thbmdt7.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK Accelrys Discovery Studio PDB file  
  
Ignored bad PDB record found on line 2  
REMARK Created: 2021-01-10T12:32:05Z  
  
Chain information for thbmdt7.pdb #2  
---  
Chain | Description  
X | No description available  
  

> select clear

> open G:/1HNU/yaolab/t7nie/linker.pdb

Summary of feedback from opening G:/1HNU/yaolab/t7nie/linker.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK Accelrys Discovery Studio PDB file  
  
Ignored bad PDB record found on line 2  
REMARK Created: 2021-01-10T12:31:32Z  
  
Chain information for linker.pdb #3  
---  
Chain | Description  
X | No description available  
  

> select clear

Invalid "residues" argument: Expected true or false (or 1 or 0)  

Unknown command: residues 169-179  

Unknown command: residues 169  

Invalid "residues" argument: Expected true or false (or 1 or 0)  

Unknown command: 1  

Unknown command: 0  

> toolshed show Toolbar

> select #2

13774 atoms, 13929 bonds, 1 model selected  

> ~select #2

Nothing selected  

> select clear

> select clear

> select #3

421 atoms, 421 bonds, 1 model selected  

> select clear

> show sel cartoons

> show sel cartoons

> show sel atoms

> hide sel atoms

> ui favorite true Toolbar

> name frozen 1 sel

registering illegal selector name "1"  

Unknown command: 1  

> close #3

> close

Unknown command: 1  

Unknown command: 1  

> open "G:\\\1HNU\\\yaolab\\\t7nie\\\thbmdt7.pdb"

Summary of feedback from opening G:\1HNU\yaolab\t7nie\thbmdt7.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK Accelrys Discovery Studio PDB file  
  
Ignored bad PDB record found on line 2  
REMARK Created: 2021-01-10T12:32:05Z  
  
Chain information for thbmdt7.pdb #1  
---  
Chain | Description  
X | No description available  
  

> open G:/1HNU/yaolab/t7nie/lys.pdb

Summary of feedback from opening G:/1HNU/yaolab/t7nie/lys.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK Accelrys Discovery Studio PDB file  
  
Ignored bad PDB record found on line 2  
REMARK Created: 2021-01-10T12:30:28Z  
  
Chain information for lys.pdb #2  
---  
Chain | Description  
X | No description available  
  

> open G:/1HNU/yaolab/t7nie/linker.pdb

Summary of feedback from opening G:/1HNU/yaolab/t7nie/linker.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK Accelrys Discovery Studio PDB file  
  
Ignored bad PDB record found on line 2  
REMARK Created: 2021-01-10T12:31:32Z  
  
Chain information for linker.pdb #3  
---  
Chain | Description  
X | No description available  
  

> select #3/X:163

7 atoms, 6 bonds, 1 model selected  

> help help:user/tools/Toolbar.html

> select clear

> toolshed show "Model Panel"

> select #3/X:163

7 atoms, 6 bonds, 1 model selected  

> toolshed show Toolbar

> hide target m

> hide target m

> show target m

> view clip false

> select #3/X:164

19 atoms, 18 bonds, 1 model selected  

> toolshed show Toolbar

> distance style color #bbd7ff

> distance style color #3edfff

> distance style color #29ff66

> distance style color #d7ff0a

> distance style color #dfff0a

> color list

No custom colors.  
248 builtin colors: alice blue

, aliceblue

, antique white

, antiquewhite

, aqua

, aquamarine

, azure

, beige

, bisque

, black

, blanched almond

, blanchedalmond

, blue

, blue violet

, blueviolet

, brown

, burly wood

, burlywood

, cadet blue

, cadetblue

, chartreuse

, chocolate

, coral

, cornflower blue

, cornflowerblue

, cornsilk

, crimson

, cyan

, dark blue

, dark cyan

, dark goldenrod

, dark gray

, dark green

, dark grey

, dark khaki

, dark magenta

, dark olive green

, dark orange

, dark orchid

, dark red

, dark salmon

, dark sea green

, dark seagreen

, dark slate blue

, dark slate gray

, dark slate grey

, dark turquoise

, dark violet

, darkblue

, darkcyan

, darkgoldenrod

, darkgray

, darkgreen

, darkgrey

, darkkhaki

, darkmagenta

, darkolivegreen

, darkorange

, darkorchid

, darkred

, darksalmon

, darkseagreen

, darkslateblue

, darkslategray

, darkslategrey

, darkturquoise

, darkviolet

, deep pink

, deep sky blue

, deep skyblue

, deeppink

, deepskyblue

, dim gray

, dim grey

, dimgray

, dimgrey

, dodger blue

, dodgerblue

, fire brick

, firebrick

, floral white

, floralwhite

, forest green

, forestgreen

, fuchsia

, gainsboro

, ghost white

, ghostwhite

, gold

, goldenrod

, gray

, green

, green yellow

, greenyellow

, grey

, honeydew

, hot pink

, hotpink

, indian red

, indianred

, indigo

, ivory

, khaki

, lavender

, lavender blush

, lavenderblush

, lawn green

, lawngreen

, lemon chiffon

, lemonchiffon

, light blue

, light coral

, light cyan

, light goldenrod yellow

, light gray

, light green

, light grey

, light pink

, light salmon

, light sea green

, light seagreen

, light sky blue

, light skyblue

, light slate gray

, light slate grey

, light steel blue

, light yellow

, lightblue

, lightcoral

, lightcyan

, lightgoldenrodyellow

, lightgray

, lightgreen

, lightgrey

, lightpink

, lightsalmon

, lightseagreen

, lightskyblue

, lightslategray

, lightslategrey

, lightsteelblue

, lightyellow

, lime

, lime green

, limegreen

, linen

, magenta

, maroon

, medium aquamarine

, medium blue

, medium orchid

, medium purple

, medium sea green

, medium seagreen

, medium slate blue

, medium spring green

, medium turquoise

, medium violet red

, mediumaquamarine

, mediumblue

, mediumorchid

, mediumpurple

, mediumseagreen

, mediumslateblue

, mediumspringgreen

, mediumturquoise

, mediumvioletred

, midnight blue

, midnightblue

, mint cream

, mintcream

, misty rose

, mistyrose

, moccasin

, navajo white

, navajowhite

, navy

, old lace

, oldlace

, olive

, olive drab

, olivedrab

, orange

, orange red

, orangered

, orchid

, pale goldenrod

, pale green

, pale turquoise

, pale violet red

, palegoldenrod

, palegreen

, paleturquoise

, palevioletred

, papaya whip

, papayawhip

, peach puff

, peachpuff

, peru

, pink

, plum

, powder blue

, powderblue

, purple

, rebecca purple

, rebeccapurple

, red

, rosy brown

, rosybrown

, royal blue

, royalblue

, saddle brown

, saddlebrown

, salmon

, sandy brown

, sandybrown

, sea green

, seagreen

, seashell

, sienna

, silver

, sky blue

, skyblue

, slate blue

, slate gray

, slate grey

, slateblue

, slategray

, slategrey

, snow

, spring green

, springgreen

, steel blue

, steelblue

, tan

, teal

, thistle

, tomato

, transparent

, turquoise

, violet

, wheat

, white

, white smoke

, whitesmoke

, yellow

, yellow green

, and yellowgreen

.  

> color list

No custom colors.  
248 builtin colors: alice blue

, aliceblue

, antique white

, antiquewhite

, aqua

, aquamarine

, azure

, beige

, bisque

, black

, blanched almond

, blanchedalmond

, blue

, blue violet

, blueviolet

, brown

, burly wood

, burlywood

, cadet blue

, cadetblue

, chartreuse

, chocolate

, coral

, cornflower blue

, cornflowerblue

, cornsilk

, crimson

, cyan

, dark blue

, dark cyan

, dark goldenrod

, dark gray

, dark green

, dark grey

, dark khaki

, dark magenta

, dark olive green

, dark orange

, dark orchid

, dark red

, dark salmon

, dark sea green

, dark seagreen

, dark slate blue

, dark slate gray

, dark slate grey

, dark turquoise

, dark violet

, darkblue

, darkcyan

, darkgoldenrod

, darkgray

, darkgreen

, darkgrey

, darkkhaki

, darkmagenta

, darkolivegreen

, darkorange

, darkorchid

, darkred

, darksalmon

, darkseagreen

, darkslateblue

, darkslategray

, darkslategrey

, darkturquoise

, darkviolet

, deep pink

, deep sky blue

, deep skyblue

, deeppink

, deepskyblue

, dim gray

, dim grey

, dimgray

, dimgrey

, dodger blue

, dodgerblue

, fire brick

, firebrick

, floral white

, floralwhite

, forest green

, forestgreen

, fuchsia

, gainsboro

, ghost white

, ghostwhite

, gold

, goldenrod

, gray

, green

, green yellow

, greenyellow

, grey

, honeydew

, hot pink

, hotpink

, indian red

, indianred

, indigo

, ivory

, khaki

, lavender

, lavender blush

, lavenderblush

, lawn green

, lawngreen

, lemon chiffon

, lemonchiffon

, light blue

, light coral

, light cyan

, light goldenrod yellow

, light gray

, light green

, light grey

, light pink

, light salmon

, light sea green

, light seagreen

, light sky blue

, light skyblue

, light slate gray

, light slate grey

, light steel blue

, light yellow

, lightblue

, lightcoral

, lightcyan

, lightgoldenrodyellow

, lightgray

, lightgreen

, lightgrey

, lightpink

, lightsalmon

, lightseagreen

, lightskyblue

, lightslategray

, lightslategrey

, lightsteelblue

, lightyellow

, lime

, lime green

, limegreen

, linen

, magenta

, maroon

, medium aquamarine

, medium blue

, medium orchid

, medium purple

, medium sea green

, medium seagreen

, medium slate blue

, medium spring green

, medium turquoise

, medium violet red

, mediumaquamarine

, mediumblue

, mediumorchid

, mediumpurple

, mediumseagreen

, mediumslateblue

, mediumspringgreen

, mediumturquoise

, mediumvioletred

, midnight blue

, midnightblue

, mint cream

, mintcream

, misty rose

, mistyrose

, moccasin

, navajo white

, navajowhite

, navy

, old lace

, oldlace

, olive

, olive drab

, olivedrab

, orange

, orange red

, orangered

, orchid

, pale goldenrod

, pale green

, pale turquoise

, pale violet red

, palegoldenrod

, palegreen

, paleturquoise

, palevioletred

, papaya whip

, papayawhip

, peach puff

, peachpuff

, peru

, pink

, plum

, powder blue

, powderblue

, purple

, rebecca purple

, rebeccapurple

, red

, rosy brown

, rosybrown

, royal blue

, royalblue

, saddle brown

, saddlebrown

, salmon

, sandy brown

, sandybrown

, sea green

, seagreen

, seashell

, sienna

, silver

, sky blue

, skyblue

, slate blue

, slate gray

, slate grey

, slateblue

, slategray

, slategrey

, snow

, spring green

, springgreen

, steel blue

, steelblue

, tan

, teal

, thistle

, tomato

, transparent

, turquoise

, violet

, wheat

, white

, white smoke

, whitesmoke

, yellow

, yellow green

, and yellowgreen

.  

> select #3/X:173

11 atoms, 10 bonds, 1 model selected  

> color gold

> color gold

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random' or a keyword  

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random' or a keyword  

Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword  

Expected a collection of one of 'atoms', 'cartoons', 'ribbons', or 'surfaces'
or a keyword  

Expected a collection of one of 'atoms', 'cartoons', 'ribbons', or 'surfaces'
or a keyword  

> name frozen 1 sel

registering illegal selector name "1"  

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random' or a keyword  

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random' or a keyword  

Expected a collection of one of 'atoms', 'cartoons', 'ribbons', or 'surfaces'
or a keyword  

> color byattribute gold

No known/registered attribute gold  

Expected a collection of one of 'atoms', 'cartoons', 'ribbons', or 'surfaces'
or a keyword  

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random' or a keyword  

Expected a collection of one of 'atoms', 'cartoons', 'ribbons', or 'surfaces'
or a keyword  

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random' or a keyword  

> color gold

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random' or a keyword  

Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword  

> color random

Unknown command: selection  

> select

16572 atoms, 16754 bonds, 3 models selected  

Expected an objects specifier or a keyword  

Invalid "residues" argument: Expected true or false (or 1 or 0)  

Invalid "residues" argument: Expected true or false (or 1 or 0)  

Invalid "residues" argument: Expected true or false (or 1 or 0)  

> select residues true

16572 atoms, 16754 bonds, 3 models selected  

> select residues true

16572 atoms, 16754 bonds, 3 models selected  

Expected an objects specifier or a keyword  

Expected an objects specifier or a keyword  

Expected an objects specifier or a keyword  

Expected an objects specifier or a keyword  

Expected an objects specifier or a keyword  

> select #1

13774 atoms, 13929 bonds, 1 model selected  

> select #167

Nothing selected  

> help help:user

> select #179

Nothing selected  

> style sel stick

Changed 132 atom styles  

> style sel sphere

Changed 132 atom styles  

> nucleotides sel atoms

> style nucleic & sel stick

Changed 0 atom styles  

> style sel ball

Changed 132 atom styles  

> show sel cartoons

> show sel atoms

> nucleotides sel atoms

> style nucleic & sel stick

Changed 0 atom styles  

> style sel sphere

Changed 96 atom styles  

> style sel ball

Changed 96 atom styles  

> show sel cartoons

> hide sel atoms

> rainbow sel

> ui mousemode rightMode "crop volume"

> show sel atoms

> color sel yellow

> close session

> open "G:\\\1HNU\\\yaolab\\\t7nie\\\thbmdt7.pdb"

Summary of feedback from opening G:\1HNU\yaolab\t7nie\thbmdt7.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK Accelrys Discovery Studio PDB file  
  
Ignored bad PDB record found on line 2  
REMARK Created: 2021-01-10T12:32:05Z  
  
Chain information for thbmdt7.pdb #1  
---  
Chain | Description  
X | No description available  
  

> open "G:\\\1HNU\\\yaolab\\\t7nie\\\linker.pdb"

Summary of feedback from opening G:\1HNU\yaolab\t7nie\linker.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK Accelrys Discovery Studio PDB file  
  
Ignored bad PDB record found on line 2  
REMARK Created: 2021-01-10T12:31:32Z  
  
Chain information for linker.pdb #2  
---  
Chain | Description  
X | No description available  
  

> open "G:\\\1HNU\\\yaolab\\\t7nie\\\lys.pdb"

Summary of feedback from opening G:\1HNU\yaolab\t7nie\lys.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK Accelrys Discovery Studio PDB file  
  
Ignored bad PDB record found on line 2  
REMARK Created: 2021-01-10T12:30:28Z  
  
Chain information for lys.pdb #3  
---  
Chain | Description  
X | No description available  
  

> select #1/X

13774 atoms, 13929 bonds, 1 model selected  

> show sel surfaces

> select #1/X

13774 atoms, 13929 bonds, 1 model selected  

> show sel surfaces

> show sel surfaces

> select #3/X

2377 atoms, 2404 bonds, 1 model selected  

> show sel surfaces

Traceback (most recent call last):  
File "F:\install\ChimeraX\bin\lib\site-packages\chimerax\model_panel\tool.py",
line 212, in set_single_color  
cm.single_color = rgba  
File "F:\install\ChimeraX\bin\lib\site-
packages\chimerax\core\graphics\drawing.py", line 243, in __setattr__  
super(Drawing, self).__setattr__(key, value)  
File "F:\install\ChimeraX\bin\lib\site-packages\chimerax\atomic\structure.py",
line 268, in _set_single_color  
self.atoms.colors = color  
File "F:\install\ChimeraX\bin\lib\site-
packages\chimerax\atomic\attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File "F:\install\ChimeraX\bin\lib\site-
packages\chimerax\atomic\attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File "F:\install\ChimeraX\bin\lib\site-
packages\chimerax\atomic\attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File "F:\install\ChimeraX\bin\lib\site-
packages\chimerax\atomic\attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "F:\install\ChimeraX\bin\lib\site-packages\chimerax\model_panel\tool.py",
line 212, in set_single_color  
cm.single_color = rgba  
File "F:\install\ChimeraX\bin\lib\site-
packages\chimerax\core\graphics\drawing.py", line 243, in __setattr__  
super(Drawing, self).__setattr__(key, value)  
File "F:\install\ChimeraX\bin\lib\site-packages\chimerax\atomic\structure.py",
line 268, in _set_single_color  
self.atoms.colors = color  
File "F:\install\ChimeraX\bin\lib\site-
packages\chimerax\atomic\attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File "F:\install\ChimeraX\bin\lib\site-
packages\chimerax\atomic\attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File "F:\install\ChimeraX\bin\lib\site-
packages\chimerax\atomic\attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
[lots of these deleted]
  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File "F:\install\ChimeraX\bin\lib\site-
packages\chimerax\atomic\attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "F:\install\ChimeraX\bin\lib\site-packages\chimerax\model_panel\tool.py",
line 212, in set_single_color  
cm.single_color = rgba  
File "F:\install\ChimeraX\bin\lib\site-
packages\chimerax\core\graphics\drawing.py", line 243, in __setattr__  
super(Drawing, self).__setattr__(key, value)  
File "F:\install\ChimeraX\bin\lib\site-packages\chimerax\atomic\structure.py",
line 268, in _set_single_color  
self.atoms.colors = color  
File "F:\install\ChimeraX\bin\lib\site-
packages\chimerax\atomic\attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File "F:\install\ChimeraX\bin\lib\site-
packages\chimerax\atomic\attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File "F:\install\ChimeraX\bin\lib\site-
packages\chimerax\atomic\attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File "F:\install\ChimeraX\bin\lib\site-
packages\chimerax\atomic\attr_registration.py", line 65, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 456.71
OpenGL renderer: GeForce GTX 960/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Change History (2)

comment:1 by pett, 5 years ago

Component: UnassignedStructure Analysis
Description: modified (diff)
Owner: set to pett
Platform: all
Project: ChimeraX
Status: newaccepted
Summary: ChimeraX bug report submissionExecution of 'Structure' object's 'atoms' property raised AttributeError
Version: 0.91

comment:2 by pett, 5 years ago

Resolution: can't reproduce
Status: acceptedclosed
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