Timeline



Nov 23, 2020:

10:46 AM Ticket #3973 (Map fitting: fmap is None) closed by Tom Goddard
duplicate: Duplicate of #3559. Fixed 4 months ago, fixed in ChimeraX 1.1.
7:58 AM Ticket #3974 (Something broke in the PBD look up) created by Hans-Christian.Reinecker@…
[…] [attachment:"SLFN5 …
6:26 AM Ticket #3973 (Map fitting: fmap is None) created by chimerax-bug-report@…
[…]
4:41 AM Ticket #3972 (ChimeraX OpenGL startup issue after updating system to Ubuntu 20.04) created by luca.jovine@…
[…]

Nov 21, 2020:

10:57 AM Ticket #3971 ('OpenMM_Thread_Handler' object has no attribute '_c_pointer') created by kartik.manne@…
[…]

Nov 20, 2020:

7:03 PM Ticket #3970 (Can ChimeraX use GPL licensed QtCharts) created by tony.schaefer@…
QtCharts is a module for making plots that is an alternative to …
3:13 PM Ticket #3687 (Find a way for VR meeting to handle firewalls) closed by Tom Goddard
fixed: Added GUI panel. Allows choosing different proxy servers. Tested …
10:58 AM Ticket #3969 ("toolshed install" doesn't work with custom bundle) created by daniel.palma.i@…
[…]
10:42 AM Ticket #3968 (map save error) closed by pett
fixed: Hi Rene, This will work in tomorrow's daily build. Until then, you …
9:31 AM Ticket #3968 (map save error) reopened by pett
Tom, All save keywords except for "models" are currently being …
9:15 AM Ticket #3968 (map save error) closed by pett
not a bug: Hi Rene, The keyword is 'maskZone', not 'zoneMask'. --Eric Eric …
9:07 AM Ticket #3968 (map save error) created by r.frank@…
[…]
8:16 AM Ticket #3967 (Toolshed json parsing error and volume session-restore error) created by chimerax-bug-report@…
[…]
5:25 AM Ticket #3966 (Clipper: Failure to read BUSTER MTZ file) created by erwin.pannecoucke@…
[…]
12:33 AM Ticket #3961 (Splash screen font size off for "restart action") closed by Greg Couch
fixed: It's currently sess.ui.splash_info("Restart action:\n%s" % line)

Nov 19, 2020:

6:46 PM Ticket #3965 (Dual display mac crash clicking menus) closed by Tom Goddard
duplicate: Similar to #3962
6:45 PM Ticket #3964 (Dual display mac crash clicking menus) closed by Tom Goddard
duplicate: Similar to #3962
6:43 PM Ticket #3963 (mac dual display crash clicking menus) closed by Tom Goddard
duplicate
6:41 PM Ticket #3965 (Dual display mac crash clicking menus) created by goddard@…
[…]
6:31 PM Ticket #3964 (Dual display mac crash clicking menus) created by goddard@…
[…]
6:21 PM Ticket #3963 (mac dual display crash clicking menus) created by goddard@…
[…]
5:57 PM Ticket #3959 (splash_info() called with incorrect args in nogui mode) closed by Greg Couch
fixed: The bug is that the nogui splash_info not treating those arguments as …
4:37 PM Ticket #3483 (Crash in garbage collection during session restore) closed by Greg Couch
can't reproduce: Need more information.
4:26 PM NeteSOW edited by Tom Goddard
(diff)
4:23 PM Ticket #3962 (Dual display crash showing tool tip) closed by Tom Goddard
can't reproduce: Other similar QToolTip crashes don't have sub event loop processing …
4:08 PM NeteSOW edited by Tom Goddard
ui-1 contains 46 zero bytes. Usually this is a short text file of … (diff)
4:02 PM DeveloperMeetings edited by Tom Goddard
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4:01 PM DeveloperMeetings2019 created by Tom Goddard
4:01 PM DeveloperMeetings edited by Tom Goddard
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3:59 PM 2020-11-19 edited by Tom Goddard
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2:10 PM NeteSOW edited by Elaine Meng
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2:10 PM NeteSOW edited by Elaine Meng
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1:44 PM NeteSOW edited by Elaine Meng
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1:44 PM Ticket #3962 (Dual display crash showing tool tip) created by chimerax-bug-report@…
[…]
12:54 PM 2020-11-19 edited by Elaine Meng
(diff)
12:40 PM 2020-11-19 edited by Scooter Morris
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12:37 PM 2020-11-19 edited by Elaine Meng
(diff)
12:34 PM 2020-11-19 edited by Scooter Morris
(diff)
12:34 PM 2020-11-19 edited by Scooter Morris
(diff)
12:33 PM 2020-11-19 edited by Elaine Meng
(diff)
12:32 PM 2020-11-19 edited by Elaine Meng
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12:31 PM 2020-11-19 edited by Elaine Meng
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12:25 PM 2020-11-19 edited by Elaine Meng
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12:21 PM 2020-11-19 edited by Elaine Meng
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12:05 PM 2020-11-19 edited by Tom Goddard
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11:06 AM 2020-11-19 created by Tom Goddard
11:01 AM DeveloperMeetings edited by Tom Goddard
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10:06 AM Ticket #3961 (Splash screen font size off for "restart action") created by Tristan Croll
[…] splash_screen.png
10:06 AM Ticket #3957 (FloatOption: name 'singleStep' is not defined) closed by pett
fixed
9:12 AM Ticket #3960 (Crash in garbage collection during new-object allocation) created by cassiezhang9@…
[…]
4:20 AM Ticket #3959 (splash_info() called with incorrect args in nogui mode) created by Tristan Croll
[…]

Nov 18, 2020:

8:03 PM Ticket #3958 (Better meeting network performance, msgpack) created by Tom Goddard
Would be good to replace the current ChimeraX meeting command network …
8:03 PM Ticket #3957 (FloatOption: name 'singleStep' is not defined) created by daniel.palma.i@…
[…]
7:49 PM Ticket #3875 (Setup a meeting name server) closed by Tom Goddard
fixed: Done. Used a simple custom Python name server to have desired …
7:43 PM Ticket #3878 (Remember VR meeting proxy settings) closed by Tom Goddard
fixed: Done. The meeting access command and meeting settings command control …
7:41 PM Ticket #3879 (Add a meeting settings panel) closed by Tom Goddard
fixed: Done. Menu Tools / General / Meeting.
5:54 PM NeteSOW edited by Tom Goddard
(diff)
5:46 PM NeteSOW edited by Tom Goddard
(diff)
1:40 PM Ticket #3956 (Crash in garbage collection during new-object allocation) created by cassiezhang9@…
[…]
11:46 AM Ticket #3951 (Mistaken use of caret operator) closed by pett
fixed
11:37 AM Ticket #3950 (After closing some models from restored session, session save fails) closed by Tom Goddard
duplicate: I think I figured out the bug. The problem is that that the session …
10:59 AM Ticket #3953 (Crash in Apple graphics driver) closed by Tom Goddard
nonchimerax: Mac Intel graphics driver crash when drawing scene. Graphics hardware …
10:00 AM Ticket #3955 (Crash in set_sseq_chain_id) closed by pett
duplicate: Duplicate of #3954
9:58 AM Ticket #3954 (Crash in set_sseq_chain_id) closed by pett
can't reproduce: The stack above set_sseq_chain_id makes no sense.
9:53 AM Ticket #3952 (Error in error message reinstalling bundle) closed by pett
duplicate: Hi Andras, Thanks for reporting this problem. We have had one other …
9:44 AM Ticket #3955 (Crash in set_sseq_chain_id) created by chimerax-bug-report@…
[…]
9:36 AM Ticket #3954 (Crash in set_sseq_chain_id) created by chimerax-bug-report@…
[…]
9:33 AM Ticket #3953 (Crash in Apple graphics driver) created by chimerax-bug-report@…
[…]
6:23 AM Ticket #3952 (Error in error message reinstalling bundle) created by szilagyi.andras@…
[…]

Nov 17, 2020:

3:06 PM Ticket #3951 (Mistaken use of caret operator) created by daniel.palma.i@…
[…]
2:53 PM Ticket #3950 (After closing some models from restored session, session save fails) created by claudia.mueller@…
[…]
9:01 AM Ticket #3949 (Crash while garbage collecting during object allocation) closed by pett
can't reproduce
8:53 AM Ticket #3948 (Problems coloring by residue number) closed by pett
fixed: As per Elaine's mail on chimerax-users, this was fixed a few days ago.
8:52 AM Ticket #3947 ('Alignment' object has no attribute '_headers') closed by pett
duplicate: Hi, Thanks for reporting this problem. It was fixed a few days after …
4:01 AM Ticket #3949 (Crash while garbage collecting during object allocation) created by chimerax-bug-report@…
[…]
12:55 AM Ticket #3948 (Problems coloring by residue number) created by Tristan Croll
[…]

Nov 16, 2020:

11:17 PM Ticket #3947 ('Alignment' object has no attribute '_headers') created by zhaozhennan15@…
[…]
5:15 PM Ticket #3927 (Saving files not producing file-history entries) closed by pett
fixed: Changed the name of a method and missed one use of it.
2:59 PM Ticket #3946 (Make OpenFileNameArg check that file exists) created by Tom Goddard
Would be convenient if OpenFileNameArg checked that the file exists so …
2:49 PM Ticket #1560 (Need command style guide) closed by pett
fixed: Placed the style guide into the docs and linked to it in various …
10:16 AM Ticket #3943 (Loading scipy: Cannot find the specified module) closed by Tom Goddard
duplicate: Duplicate of #3227 which was fixed in ChimeraX 1.1 by Greg Couch.
10:08 AM Ticket #3942 (Crash showing context menu on Mac, dual display) closed by Tom Goddard
can't reproduce: Appears to be Qt bug, possibly related to using 2 displays. Crash …
9:48 AM Ticket #3945 (Error saving settings) closed by pett
duplicate: Hi Mika, Thanks for reporting this problem. The code generating the …
9:39 AM Ticket #3944 (add_modified() not handling sets) closed by pett
duplicate: Hi Valentyn, Thanks for reporting this problem. Due to an oversight, …
9:31 AM Ticket #3941 (add_modified() not handling sets) closed by pett
fixed
3:38 AM Ticket #3945 (Error saving settings) created by s1960571@…
[…]

Nov 15, 2020:

6:59 PM Ticket #3944 (add_modified() not handling sets) created by sitins07@…
[…]

Nov 14, 2020:

1:05 AM Ticket #3943 (Loading scipy: Cannot find the specified module) created by chimerax-bug-report@…
[…]

Nov 13, 2020:

10:18 PM Ticket #3942 (Crash showing context menu on Mac, dual display) created by chimerax-bug-report@…
[…]
5:21 PM Ticket #3938 (command "color zone" with "sharpEdges true" makes surface cap on map ...) closed by Tom Goddard
fixed: Fixed. Color zone with sharp edges retriangulates the surface and …
4:33 PM Ticket #3939 (Volume bounds problem, ValueError: could not broadcast input array) closed by Tom Goddard
fixed: Fixed. Remarkably Volume.writable_copy(subregion=...) was not …
4:32 PM Ticket #3905 (Traceback when Update Bundles cancelled) closed by Greg Couch
fixed: Unable to reproduce this. Switched to suggested fix.
3:59 PM Ticket #3940 (VR meeting error, Oculus runtime crashed) closed by Tom Goddard
can't reproduce: I am going to chalk this up to unstable Oculus runtime. If I see it …
3:09 PM Ticket #3941 (add_modified() not handling sets) created by chimerax-bug-report@…
[…]
3:02 PM Ticket #3940 (VR meeting error, Oculus runtime crashed) created by goddard@…
[…]
11:24 AM Ticket #3939 (Volume bounds problem, ValueError: could not broadcast input array) created by goddard@…
[…]
11:04 AM Ticket #3934 (SS info not saved by mmCIF) closed by Greg Couch
not a bug: The mmCIF writer generates it output based on ChimeraX internal data …
9:48 AM Ticket #3937 (Error in save error message) closed by pett
duplicate: Fixed on 10/5/2020
9:44 AM Ticket #3935 (Traceback when Update Bundles cancelled) closed by pett
duplicate: Duplicate of #3905
9:35 AM Ticket #3938 (command "color zone" with "sharpEdges true" makes surface cap on map ...) created by Elaine Meng
[…]
8:21 AM Ticket #3937 (Error in save error message) created by chimerax-bug-report@…
[…]
6:41 AM Ticket #3936 (Hybrid36 issues) created by chris.moth@…
[…] ENSP00000343764.6_133_chimeraX.pdb
5:27 AM Ticket #3935 (Traceback when Update Bundles cancelled) created by chimerax-bug-report@…
[…]
5:25 AM Ticket #3934 (SS info not saved by mmCIF) created by chris.moth@…
[…] 4cox_chimeraX.cif

Nov 12, 2020:

12:55 PM NeteSOW edited by pett
(diff)
12:44 PM NeteSOW edited by Elaine Meng
(diff)
11:34 AM Ticket #3896 (Bundle install fails with new version: "already installed") closed by Greg Couch
duplicate: Fixed. Duplicate of #3795.
11:33 AM Ticket #3795 (Multiple errors related to bundle installation) closed by Greg Couch
fixed: Fixed. Bug was due to polymorphic argument to function.
10:43 AM Ticket #3861 (Contacting Toolshed blocks startup) closed by Greg Couch
fixed
9:31 AM Ticket #3933 (Cannot save command history) closed by pett
can't reproduce: *Might* have been fixed by embedding PID into temp file name.
9:14 AM Ticket #3933 (Cannot save command history) created by chimerax-bug-report@…
[…]

Nov 11, 2020:

9:40 AM Ticket #3932 (Permission denied saving image) closed by pett
not a bug: Hi, You are getting "Permission denied" because you are trying to …
9:26 AM Ticket #3931 (Permission denied saving image) closed by pett
duplicate

Nov 10, 2020:

8:05 PM Ticket #3932 (Permission denied saving image) created by 352884536@…
[…]
7:03 PM Ticket #3931 (Permission denied saving image) created by chimerax-bug-report@…
[…]
6:54 PM Ticket #3930 (Toolshed install hkcage does not use new command without restart) created by goddard@…
[…]
2:46 PM Ticket #3385 (Don't spam log with volume color change commands) closed by Tom Goddard
fixed: Fixed. I added a "color_pause" signal to ColorButton that fires after …
9:45 AM Ticket #3929 (Added NH2 saved after TER) created by Tristan Croll
[…]

Nov 9, 2020:

10:46 PM Ticket #3928 (add mouse modes and pull down menus to toolbar customization) created by Greg Couch
Currently the toolbar Home tab customization does not support mouse …
10:12 PM Ticket #2042 (Old large icons / color-selection dialog) closed by Greg Couch
can't reproduce: Sorry to take so long. I've been unable to reproduce this. And …
7:17 PM Ticket #3921 (Allow rainbow coloring on subsequences of a chain) closed by Greg Couch
duplicate: Can you tell us more about your ChimeraX installation? The version …
7:10 PM Ticket #3719 (Nucleotides: asking for distance from None) closed by Greg Couch
duplicate: This was fixed shortly have 0.93 was released. The bug is part of …
6:08 PM Ticket #3923 (Tether not shown to N-terminal OXT atom, pdb 3rum) closed by Tom Goddard
fixed: Fixed. In the normal situation where the C-terminus has an OXT, the …
5:43 PM Ticket #3927 (Saving files not producing file-history entries) created by goddard@…
[…]
5:37 PM Ticket #3920 (Drawing (map) _colors is None) closed by Tom Goddard
fixed: Fixed in tonight's daily build. Thanks for reporting the error. It …
3:10 PM Ticket #3924 (Graphics "glitchy") closed by Greg Couch
worksforme: Following Tom's recommendation.
3:06 PM Ticket #3904 (Input/output error reading session) closed by Greg Couch
can't reproduce: Unfortunately, I need the session file to reproduce this. And there …
10:25 AM Ticket #3926 (subprocess.run being called with a BundleInfo instance argument) closed by pett
duplicate: Duplicate of #3897
10:23 AM Ticket #3925 (defattr: name 'session' is not defined) closed by pett
fixed: Hi Gabor, Thanks for reporting this problem. It was fixed about 3 …
10:12 AM Ticket #3919 (KeyError deleting models during 'close session') closed by Tom Goddard
can't reproduce: You are using a very old version of ChimeraX 0.93. Current version is …
10:03 AM Ticket #3922 (subprocess.run being called with a BundleInfo instance argument) closed by pett
duplicate: Duplicate of #3897
9:48 AM Ticket #3926 (subprocess.run being called with a BundleInfo instance argument) created by chimerax-bug-report@…
[…]
9:18 AM Ticket #3918 (Qt crash (main window resize?)) closed by pett
can't reproduce
7:38 AM Ticket #3925 (defattr: name 'session' is not defined) created by papai@…
[…]
3:51 AM Ticket #3924 (Graphics "glitchy") created by chimerax-bug-report@…
[…]
1:40 AM Ticket #3923 (Tether not shown to N-terminal OXT atom, pdb 3rum) created by Tristan Croll
[…]

Nov 8, 2020:

8:57 AM Ticket #3922 (subprocess.run being called with a BundleInfo instance argument) created by chimerax-bug-report@…
[…]
6:16 AM Ticket #3921 (Allow rainbow coloring on subsequences of a chain) created by gghanim@…
[…]

Nov 7, 2020:

10:27 AM Ticket #3920 (Drawing (map) _colors is None) created by caillancm@…
[…]

Nov 6, 2020:

9:45 PM Ticket #3919 (KeyError deleting models during 'close session') created by pett
[…]
9:21 AM Ticket #3676 (Out-of-date mmCIF templates) closed by Greg Couch
fixed: Changed the bundled templates to use the version from components.cif …
7:41 AM Ticket #3918 (Qt crash (main window resize?)) created by chimerax-bug-report@…
[…]
12:11 AM Ticket #3897 (subprocess.run being called with a BundleInfo instance argument) closed by Greg Couch
fixed: Fixed installing particular versions of bundles.

Nov 5, 2020:

4:32 PM Ticket #2016 (session window size not restored even though preference is on) closed by pett
fixed: The sequence initially draws itself by laying out 50 characters per …
4:17 PM NeteSOW edited by Elaine Meng
(diff)
2:57 PM NeteSOW edited by Elaine Meng
(diff)
2:55 PM NeteSOW edited by Elaine Meng
(diff)
2:49 PM NeteSOW edited by Elaine Meng
(diff)
2:45 PM Ticket #3917 (ISOLDE: get_symmetry_handler: structure is None) created by s1960571@…
[…]
1:05 PM NeteSOW edited by Tom Goddard
(diff)
1:01 PM NeteSOW edited by Tom Goddard
(diff)

Nov 4, 2020:

9:13 PM Ticket #3800 (Add bundle builder support for Python 3 Stable ABI) closed by Greg Couch
fixed
9:13 PM Ticket #3799 (Toolshed search is not finding bundles) closed by Greg Couch
fixed
9:12 PM Ticket #3901 (Update Bundles dialog too persistent) closed by Greg Couch
fixed: Fixed. The code for detecting if the chosen toolshed had changed, …
8:19 PM NeteSOW edited by Tom Goddard
(diff)
8:17 PM NeteSOW edited by Tom Goddard
(diff)
8:12 PM NeteSOW edited by Tom Goddard
(diff)
7:26 PM Ticket #3891 (Session size 8x larger ChimeraX 1.0 vs 0.92) closed by Tom Goddard
fixed: Fixed. Made lz4 the default compression when saving a session. …
3:39 PM Ticket #3916 (Saving mmCIF files too slow to work with large structures) created by goddard@…
[…]
2:21 PM Ticket #3907 (Crash in graphics driver) closed by Tom Goddard
nonchimerax: Says ChimeraX was using 14.2 Gbytes, a hefty amount. * CFRetain() …
1:30 PM Ticket #3915 (subprocess.run being called with a BundleInfo instance argument) closed by pett
duplicate: Duplicate of #3897
1:27 PM Ticket #3914 (Traceback when Update Bundles cancelled) closed by pett
duplicate: Duplicate of #3905; adding reporter to cc list for that ticket.
1:26 PM Ticket #3913 (Traceback when Update Bundles cancelled) closed by pett
duplicate: Duplicate of #3905
1:23 PM Ticket #3912 (Traceback when Update Bundles cancelled) closed by pett
duplicate: Duplicate of #3905
1:22 PM Ticket #3911 (Traceback when Update Bundles cancelled) closed by pett
duplicate: Duplicate of #3905
12:01 PM Ticket #3906 (Crash during garbage collection) closed by pett
can't reproduce: I've seen this happen more than once, e.g. #3854; #3804; #3762; #3483
7:10 AM Ticket #3915 (subprocess.run being called with a BundleInfo instance argument) created by chimerax-bug-report@…
[…]
2:41 AM Ticket #3914 (Traceback when Update Bundles cancelled) created by david.abbasi_perez@…
[…]
2:39 AM Ticket #3913 (Traceback when Update Bundles cancelled) created by chimerax-bug-report@…
[…]
1:30 AM Ticket #3912 (Traceback when Update Bundles cancelled) created by chimerax-bug-report@…
[…]
1:30 AM Ticket #3911 (Traceback when Update Bundles cancelled) created by chimerax-bug-report@…
[…]

Nov 3, 2020:

10:11 PM Ticket #3910 (Gaussian surfaces for chains not parallelizing well) closed by Tom Goddard
fixed: Fixed. Sum of gaussians C++ code was not releasing the GIL. Added …
7:50 PM Ticket #3910 (Gaussian surfaces for chains not parallelizing well) created by goddard@…
[…]
7:40 PM Ticket #3909 (Large structure 5y6p opens unexpectedly slowly, 27 seconds) created by goddard@…
[…]
7:33 PM Ticket #3908 (Slow surface calculation, 862 chains, 5y6p) closed by Tom Goddard
fixed: Fixed. Now "surf #1 res 20 grid 7" takes 7.5 seconds instead of 153. …
5:32 PM Ticket #3908 (Slow surface calculation, 862 chains, 5y6p) created by goddard@…
[…]
1:59 PM Ticket #3907 (Crash in graphics driver) created by pett
[…]
10:46 AM Ticket #3902 (struts command needs up-to-date graphics) closed by Tom Goddard
fixed: Fixed. Made struts update structure graphics before computing …
10:44 AM Ticket #3906 (Crash during garbage collection) created by chimerax-bug-report@…
[…]
10:21 AM Ticket #3905 (Traceback when Update Bundles cancelled) created by daniel.palma.i@…
[…]
9:16 AM Ticket #3903 (preset command including trailing space in preset name) closed by pett
fixed: Rest-of-line arg needed to be .strip()ed
6:52 AM Ticket #3904 (Input/output error reading session) created by chimerax-bug-report@…
[…]

Nov 2, 2020:

6:15 PM Ticket #3898 (Toolshed Python 3.8 bundle won't install in Python 3.7) reopened by Tom Goddard
This seems like an error prone solution. It is too easy to forget to …
5:54 PM Ticket #3898 (Toolshed Python 3.8 bundle won't install in Python 3.7) closed by Greg Couch
fixed: Added limitedAPI argument to BundleInfo in bundle_info.xml. So in …
5:26 PM Ticket #3903 (preset command including trailing space in preset name) created by goddard@…
[…]
4:20 PM Ticket #3902 (struts command needs up-to-date graphics) created by pett
In a script, if I change from a non-ribbon depiction to a ribbon …
11:32 AM WikiStart edited by Tom Goddard
(diff)
11:31 AM WikiStart edited by Tom Goddard
(diff)
11:30 AM WikiStart edited by Tom Goddard
(diff)
11:27 AM WikiStart edited by Tom Goddard
(diff)
11:07 AM Ticket #3901 (Update Bundles dialog too persistent) created by pett
[…]
10:52 AM Ticket #3900 (subprocess.run being called with a BundleInfo instance argument) closed by pett
duplicate: Duplicate of #3897
10:50 AM Ticket #3900 (subprocess.run being called with a BundleInfo instance argument) created by goddard@…
[…]
10:27 AM Ticket #3899 (Deleting bundle release from Toolshed hangs) created by goddard@…
[…] Screen Shot 2020-11-02 at 10.22.11 AM.png
10:02 AM Ticket #3894 (Crash in graphics driver) closed by Tom Goddard
can't reproduce: Crash in Apple intel graphics driver, 4 GB memory being used Graphics …
10:00 AM Ticket #3898 (Toolshed Python 3.8 bundle won't install in Python 3.7) created by goddard@…
[…]
9:57 AM Ticket #3895 (Crash loading font database) closed by pett
can't reproduce: Version 0.91
9:55 AM Ticket #3897 (subprocess.run being called with a BundleInfo instance argument) created by sitins07@…
[…]
9:48 AM Ticket #3896 (Bundle install fails with new version: "already installed") created by goddard@…
[…]

Nov 1, 2020:

12:21 PM Ticket #3895 (Crash loading font database) created by chimerax-bug-report@…
[…]
2:18 AM Ticket #3894 (Crash in graphics driver) created by chimerax-bug-report@…
[…]

Oct 30, 2020:

11:36 PM Ticket #3741 (devel install fails with new wheel version 0.35.1 module.) closed by Greg Couch
fixed
6:23 PM Ticket #3893 (Make EMDB fetch display author suggested contour level) created by Tom Goddard
Eric uses the following code to fetch the EMDB XML meta data to get …
3:51 PM Ticket #3500 (Problem simulating glycans) closed by Greg Couch
not a bug: Micah figured it out.
3:10 PM Ticket #3888 (Bad glycan connectivity after mmCIF save/restore) closed by Greg Couch
can't reproduce: Til next time…
10:49 AM ChangeLog edited by Elaine Meng
(diff)
10:49 AM ChangeLog edited by Elaine Meng
(diff)

Oct 29, 2020:

10:44 AM Ticket #3892 (chain merge not reordering residues) created by Tristan Croll
[…]

Oct 28, 2020:

8:29 PM Ticket #3891 (Session size 8x larger ChimeraX 1.0 vs 0.92) created by Tom Goddard
Opening 3j3q and saving a session makes a 50 Mbyte session file in …
5:06 PM Ticket #251 (Session save/restore slow) closed by pett
fixed: Just FYI, current timings with my build is 13 seconds to open the 3j3q …
4:40 PM Ticket #3890 (Move appropriate pip dependencies to bundles) created by Greg Couch
As a policy, how about moving the various pip requirements from …
4:24 PM ChangeLog edited by Elaine Meng
(diff)
4:22 PM ChangeLog edited by Elaine Meng
(diff)
4:07 PM Ticket #1741 (Qt crash) closed by pett
can't reproduce: We're using a much different version of Qt now, so would need to see …
1:50 PM Ticket #3830 (Crash (in modal dialog?)) closed by pett
can't reproduce: Can't reproduce this using ChimeraX 1.0 off a flash drive. Hopefully …
1:46 PM Ticket #3889 (Select→Chain organization not preserved through session save/restore) created by pett
Noticed it with 5y6p, but a less humongous example is 1www.
12:06 PM Ticket #3888 (Bad glycan connectivity after mmCIF save/restore) created by Tristan Croll
[…]
10:12 AM Ticket #3887 (Problem reading Hybrid-36 chain IDs for non-polymeric chain) created by Tristan Croll
[…]
10:07 AM Ticket #3886 (HELIX/SHEET records need to support Hybrid-36 chain IDs) created by Tristan Croll
[…]
7:14 AM Ticket #3885 (~sel wrong/unintuitive in some situations) created by Tristan Croll
[…]

Oct 27, 2020:

5:21 PM Ticket #3884 (Make non-VR meeting sync camera view) closed by Tom Goddard
fixed: Fixed. Meeting command now synchronizes camera view between …
9:47 AM Ticket #3882 (wrapped C/C++ object of type ChainMenuButton has been deleted) closed by pett
fixed: Don't call .deleteLater() on the chain widget -- let Python reference …
9:44 AM Ticket #3884 (Make non-VR meeting sync camera view) created by Tom Goddard
Meeting without VR would be more useful if it synchronized the view so …
7:22 AM Ticket #3883 (Largely trashed stack) created by aurore.andrieu@…
[…]
4:41 AM Ticket #3882 (wrapped C/C++ object of type ChainMenuButton has been deleted) created by chimerax-bug-report@…
[…]

Oct 26, 2020:

4:03 PM Ticket #2860 (Dead pseudobond group being saved in session) closed by pett
fixed: Fixed by other changes since the 0.91 release.
11:53 AM Ticket #3881 (VR toolbar gui) created by Tom Goddard
The toolbar panel is especially useful in VR but it is inconveniently …
11:50 AM Ticket #3880 (Show VR meeting participants name below face) created by Tom Goddard
For meetings where the participants don't know each other or where …
11:47 AM Ticket #3879 (Add a meeting settings panel) created by Tom Goddard
Would be helpful to have meeting graphical user interface where …
11:43 AM Ticket #3878 (Remember VR meeting proxy settings) created by Tom Goddard
It would be convenient to remember meeting command proxy settings (IP …
11:38 AM Ticket #3877 (Add VR meeting hands-off toggle button to avoid accidental model moves) created by Tom Goddard
It is very easy to accidentally press the grip button on Oculus touch …
11:30 AM Ticket #3876 (Gray out VR meeting participants not wearing headset) created by Tom Goddard
Would be nice to show face image and hands dimmed in VR meetings if a …
11:15 AM Ticket #3866 (Corrupted config file) closed by pett
fixed: ChimeraX now catches config-file parsing errors and reverts to …
11:08 AM Ticket #3875 (Setup a meeting name server) created by Tom Goddard
When joining a VR meeting one specifies the host address of the …
9:02 AM Ticket #3873 (Trashed stack) closed by pett
can't reproduce
6:36 AM Ticket #3874 (Error in error message reinstalling bundle) created by rwp33@…
[…]

Oct 24, 2020:

11:13 AM Ticket #3873 (Trashed stack) created by chimerax-bug-report@…
[…]
Note: See TracTimeline for information about the timeline view.