Opened 5 years ago
Closed 5 years ago
#3904 closed defect (can't reproduce)
Input/output error reading session
| Reported by: | Owned by: | Greg Couch | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Sessions | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Linux-3.10.0-1062.12.1.el7.x86_64-x86_64-with-centos-7.8.2003-Core ChimeraX Version: 0.94 (2020-04-14) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 0.94.dev202004140658 (2020-04-14) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open2 > /run/media/tanjiaxing/JiaxingTan/1_1_Flagella_Figures/Figure0920new/Fig7-MSring/L1L2/L1L2.cxs Traceback (most recent call last): File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site- packages/chimerax/open_command/dialog.py", line 146, in _qt_safe if data_format is None else " format " + StringArg.unparse(data_format.nicknames[0]))) File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site- packages/chimerax/core/commands/run.py", line 31, in run results = command.run(text, log=log) File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site- packages/chimerax/core/commands/cli.py", line 2848, in run result = ci.function(session, **kw_args) File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site- packages/chimerax/open_command/cmd.py", line 86, in cmd_open Command(session, registry=registry).run(provider_cmd_text, log=log) File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site- packages/chimerax/core/commands/cli.py", line 2848, in run result = ci.function(session, **kw_args) File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site- packages/chimerax/open_command/cmd.py", line 136, in provider_open name or model_name_from_path(fi.file_name)), provider_kw) File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site- packages/chimerax/open_command/cmd.py", line 349, in collated_open return func(*func_args, **func_kw) File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site- packages/chimerax/core_formats/__init__.py", line 26, in open return cxs_open(session, data, **kw) File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site- packages/chimerax/core/session.py", line 913, in open session.restore(stream, path=path, resize_window=resize_window) File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site- packages/chimerax/core/session.py", line 609, in restore metadata = fdeserialize(stream) File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site- packages/chimerax/core/serialize.py", line 68, in msgpack_deserialize return next(stream) File "msgpack/_unpacker.pyx", line 562, in msgpack._cmsgpack.Unpacker.__next__ File "msgpack/_unpacker.pyx", line 483, in msgpack._cmsgpack.Unpacker._unpack File "msgpack/_unpacker.pyx", line 468, in msgpack._cmsgpack.Unpacker.read_from_file OSError: [Errno 5] Input/output error OSError: [Errno 5] Input/output error File "msgpack/_unpacker.pyx", line 468, in msgpack._cmsgpack.Unpacker.read_from_file See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 418.43 OpenGL renderer: Quadro P4000/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Manufacturer: Gigabyte Technology Co., Ltd. Model: C246-WU4 OS: CentOS Linux 7 Core Architecture: 64bit ELF CPU: 8 Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz Cache Size: 12288 KB Graphics: 01:00.0 VGA compatible controller [0300]: NVIDIA Corporation GP104GL [Quadro P4000] [10de:1bb1] (rev a1) Subsystem: NVIDIA Corporation Device [10de:11a3] Kernel driver in use: nvidia
Change History (2)
comment:1 by , 5 years ago
| Component: | Unassigned → Sessions |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Input/output error reading session |
comment:2 by , 5 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | assigned → closed |
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Unfortunately, I need the session file to reproduce this. And there is no contact information.