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Opened 5 years ago
Closed 5 years ago
#3931 closed defect (duplicate)
Permission denied saving image
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Input/Output | Version: | 1.0 |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Windows-10-10.0.18362 ChimeraX Version: 1.0 (2020-06-04 23:15:07 UTC) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 1.0 (2020-06-04) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open "E:\\\GHSR data collection\\\18_chiemrax_real_space_refined.pdb" Summary of feedback from opening E:\\\GHSR data collection\\\18_chiemrax_real_space_refined.pdb --- warnings | Ignored bad PDB record found on line 2040 TER Ignored bad PDB record found on line 4641 TER Ignored bad PDB record found on line 6419 TER Ignored bad PDB record found on line 6856 TER Ignored bad PDB record found on line 7830 TER 2 messages similar to the above omitted Chain information for 18_chiemrax_real_space_refined.pdb #1 --- Chain | Description A | No description available B | No description available E | No description available G | No description available N | No description available R | No description available > show atoms > show cartoons > hide atoms > set bgColor white > select ::name="LIG" 64 atoms, 69 bonds, 1 model selected > style sel stick Changed 64 atom styles > show sel atoms > select clear > select /R:132 8 atoms, 7 bonds, 1 model selected > select up 268 atoms, 272 bonds, 1 model selected > select up 2255 atoms, 2317 bonds, 1 model selected > select ~sel 7732 atoms, 7886 bonds, 6 pseudobonds, 2 models selected > hide sel cartoons > select clear > mlp Map values for surface "18_chiemrax_real_space_refined.pdb_A SES surface": minimum -31.16, mean -4.917, maximum 23.79 Map values for surface "18_chiemrax_real_space_refined.pdb_B SES surface": minimum -29.75, mean -5.872, maximum 23.75 Map values for surface "18_chiemrax_real_space_refined.pdb_E SES surface": minimum -27.65, mean -6.293, maximum 24.65 Map values for surface "18_chiemrax_real_space_refined.pdb_G SES surface": minimum -26.12, mean -3.125, maximum 21.97 Map values for surface "18_chiemrax_real_space_refined.pdb_N SES surface": minimum -28.02, mean -6.773, maximum 22.15 Map values for surface "18_chiemrax_real_space_refined.pdb_R SES surface": minimum -25.09, mean 0.9793, maximum 24.18 > surface zone #1 nearAtoms :LIG distance 8 maxComponents 1 > surface zone #1 nearAtoms :LIG distance 8 maxComponents 10 > surface zone #1 nearAtoms :LIG distance 3 maxComponents 10 > surface zone #1 nearAtoms :LIG distance 3 maxComponents 100 > surface zone #1 nearAtoms :LIG distance 8 maxComponents 100 > surface zone #1 nearAtoms :LIG distance 20 maxComponents 100 > surface zone #1 nearAtoms :LIG distance 50 maxComponents 100 > surface zone #1 nearAtoms :LIG distance 50 maxComponents 10 > ui tool show "Side View" > color #1.7.1 black > select clear > save finalreceptor.tif width 1000 height 1000 supersample 4 > transparentBackground true Traceback (most recent call last): File "D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 258, in execute cmd.run(cmd_text) File "D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\cli.py", line 2805, in run result = ci.function(session, **kw_args) File "D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\save_command\cmd.py", line 66, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File "D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\cli.py", line 2805, in run result = ci.function(session, **kw_args) File "D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\save_command\cmd.py", line 79, in provider_save mgr).save(session, path, **provider_kw) File "D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\image_formats\\__init__.py", line 24, in save save_image(session, path, format_name, **kw) File "D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\image_formats\save.py", line 115, in save_image i.save(path, format_name, **metadata) File "D:\chimera X\ChimeraX 1.0\bin\lib\site-packages\PIL\Image.py", line 2131, in save fp = builtins.open(filename, "w+b") PermissionError: [Errno 13] Permission denied: 'finalreceptor.tif' PermissionError: [Errno 13] Permission denied: 'finalreceptor.tif' File "D:\chimera X\ChimeraX 1.0\bin\lib\site-packages\PIL\Image.py", line 2131, in save fp = builtins.open(filename, "w+b") See log for complete Python traceback. > select up 2 atoms, 1 bond, 1 model selected > select up 64 atoms, 69 bonds, 1 model selected > hide #* target a > show sel target ab > select ~sel 9923 atoms, 10134 bonds, 8 pseudobonds, 3 models selected > surface hidePatches (#!1 & sel) > cartoon hide (#!1 & sel) > select up 2 atoms, 1 bond, 1 model selected > select up 64 atoms, 69 bonds, 1 model selected > color sel lime > color sel byhetero > select clear > save finalGHRP6.tif width 1000 height 1000 supersample 4 > transparentBackground true Traceback (most recent call last): File "D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 258, in execute cmd.run(cmd_text) File "D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\cli.py", line 2805, in run result = ci.function(session, **kw_args) File "D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\save_command\cmd.py", line 66, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File "D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\cli.py", line 2805, in run result = ci.function(session, **kw_args) File "D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\save_command\cmd.py", line 79, in provider_save mgr).save(session, path, **provider_kw) File "D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\image_formats\\__init__.py", line 24, in save save_image(session, path, format_name, **kw) File "D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\image_formats\save.py", line 115, in save_image i.save(path, format_name, **metadata) File "D:\chimera X\ChimeraX 1.0\bin\lib\site-packages\PIL\Image.py", line 2131, in save fp = builtins.open(filename, "w+b") PermissionError: [Errno 13] Permission denied: 'finalGHRP6.tif' PermissionError: [Errno 13] Permission denied: 'finalGHRP6.tif' File "D:\chimera X\ChimeraX 1.0\bin\lib\site-packages\PIL\Image.py", line 2131, in save fp = builtins.open(filename, "w+b") See log for complete Python traceback. > save finalGHRP6.tif width 1000 height 1000 supersample 4 > transparentBackground true Traceback (most recent call last): File "D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 258, in execute cmd.run(cmd_text) File "D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\cli.py", line 2805, in run result = ci.function(session, **kw_args) File "D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\save_command\cmd.py", line 66, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File "D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\cli.py", line 2805, in run result = ci.function(session, **kw_args) File "D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\save_command\cmd.py", line 79, in provider_save mgr).save(session, path, **provider_kw) File "D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\image_formats\\__init__.py", line 24, in save save_image(session, path, format_name, **kw) File "D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\image_formats\save.py", line 115, in save_image i.save(path, format_name, **metadata) File "D:\chimera X\ChimeraX 1.0\bin\lib\site-packages\PIL\Image.py", line 2131, in save fp = builtins.open(filename, "w+b") PermissionError: [Errno 13] Permission denied: 'finalGHRP6.tif' PermissionError: [Errno 13] Permission denied: 'finalGHRP6.tif' File "D:\chimera X\ChimeraX 1.0\bin\lib\site-packages\PIL\Image.py", line 2131, in save fp = builtins.open(filename, "w+b") See log for complete Python traceback. > save 1.tif width 1000 height 1000 supersample 4 transparentBackground true Traceback (most recent call last): File "D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 258, in execute cmd.run(cmd_text) File "D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\cli.py", line 2805, in run result = ci.function(session, **kw_args) File "D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\save_command\cmd.py", line 66, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File "D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\cli.py", line 2805, in run result = ci.function(session, **kw_args) File "D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\save_command\cmd.py", line 79, in provider_save mgr).save(session, path, **provider_kw) File "D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\image_formats\\__init__.py", line 24, in save save_image(session, path, format_name, **kw) File "D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\image_formats\save.py", line 115, in save_image i.save(path, format_name, **metadata) File "D:\chimera X\ChimeraX 1.0\bin\lib\site-packages\PIL\Image.py", line 2131, in save fp = builtins.open(filename, "w+b") PermissionError: [Errno 13] Permission denied: '1.tif' PermissionError: [Errno 13] Permission denied: '1.tif' File "D:\chimera X\ChimeraX 1.0\bin\lib\site-packages\PIL\Image.py", line 2131, in save fp = builtins.open(filename, "w+b") See log for complete Python traceback. > save 1.tif width 2000 height 2000 supersample 4 transparentBackground true Traceback (most recent call last): File "D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 258, in execute cmd.run(cmd_text) File "D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\cli.py", line 2805, in run result = ci.function(session, **kw_args) File "D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\save_command\cmd.py", line 66, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File "D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\cli.py", line 2805, in run result = ci.function(session, **kw_args) File "D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\save_command\cmd.py", line 79, in provider_save mgr).save(session, path, **provider_kw) File "D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\image_formats\\__init__.py", line 24, in save save_image(session, path, format_name, **kw) File "D:\chimera X\ChimeraX 1.0\bin\lib\site- packages\chimerax\image_formats\save.py", line 115, in save_image i.save(path, format_name, **metadata) File "D:\chimera X\ChimeraX 1.0\bin\lib\site-packages\PIL\Image.py", line 2131, in save fp = builtins.open(filename, "w+b") PermissionError: [Errno 13] Permission denied: '1.tif' PermissionError: [Errno 13] Permission denied: '1.tif' File "D:\chimera X\ChimeraX 1.0\bin\lib\site-packages\PIL\Image.py", line 2131, in save fp = builtins.open(filename, "w+b") See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 442.74 OpenGL renderer: GeForce GTX 1650 SUPER/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Manufacturer: IPASON Model: OS: Microsoft Windows 10 家庭中文版 (Build 18363) Memory: 17,130,639,360 MaxProcessMemory: 137,438,953,344 CPU: 6 AMD Ryzen 5 3500X 6-Core Processor " PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.8
Change History (2)
comment:1 by , 5 years ago
| Component: | Unassigned → Input/Output |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Permission denied saving image |
| Version: | → 1.0 |
comment:2 by , 5 years ago
| Resolution: | → duplicate |
|---|---|
| Status: | accepted → closed |
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