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Opened 5 years ago
Closed 5 years ago
#3804 closed defect (can't reproduce)
Crash trying to allocate memory for Python object corresponding to new pseudobond
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-19.6.0-x86_64-i386-64bit
ChimeraX Version: 1.1 (2020-09-09 22:22:27 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [69749]
Path: /Volumes/VOLUME/*/ChimeraX-1.1.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.1.0 (1.1.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [69749]
User ID: 501
Date/Time: 2020-10-06 04:33:20.053 -0400
OS Version: Mac OS X 10.15.6 (19G2021)
Report Version: 12
Bridge OS Version: 3.0 (14Y908)
Anonymous UUID: E0A62211-BD41-0D11-760D-6AD9D8B702C4
Sleep/Wake UUID: 18C022DF-3160-4877-BF71-BE7D2AC13D55
Time Awake Since Boot: 600000 seconds
Time Since Wake: 24000 seconds
System Integrity Protection: enabled
Notes: Translocated Process
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x00000000000000a9
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0xa9:
-->
__TEXT 000000010b44f000-000000010b450000 [ 4K] r-x/r-x SM=COW /var/folders/*/ChimeraX-1.1.app/Contents/MacOS/ChimeraX
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff676a333a __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff6775fe60 pthread_kill + 430
2 libsystem_c.dylib 0x00007fff675ba93e raise + 26
3 libsystem_platform.dylib 0x00007fff677545fd _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 org.python.python 0x000000010b4c79a0 tupletraverse + 64
6 org.python.python 0x000000010b5ad9b3 collect + 2083
7 org.python.python 0x000000010b5ae15e _PyObject_GC_Alloc + 286
8 org.python.python 0x000000010b5ae234 _PyObject_GC_New + 20
9 org.python.python 0x000000010b4ada5a _PyObjectDict_SetItem + 666
10 org.python.python 0x000000010b4ba5a1 _PyObject_GenericSetAttrWithDict + 369
11 org.python.python 0x000000010b4b995c PyObject_SetAttr + 108
12 org.python.python 0x000000010b54b635 _PyEval_EvalFrameDefault + 13781
13 org.python.python 0x000000010b47cd81 function_code_fastcall + 177
14 org.python.python 0x000000010b551be4 call_function + 772
15 org.python.python 0x000000010b54e8be _PyEval_EvalFrameDefault + 26718
16 org.python.python 0x000000010b47cd81 function_code_fastcall + 177
17 org.python.python 0x000000010b47d893 _PyObject_Call_Prepend + 131
18 org.python.python 0x000000010b4d0e5f slot_tp_init + 175
19 org.python.python 0x000000010b4cc554 type_call + 292
20 org.python.python 0x000000010b47c132 _PyObject_FastCallDict + 354
21 org.python.python 0x000000010b47e70b object_vacall + 619
22 org.python.python 0x000000010b47e910 PyObject_CallFunctionObjArgs + 144
23 libatomstruct.dylib 0x0000000123118c68 pyinstance::PythonInstance::py_instance(bool) const + 152
24 libmolc.dylib 0x00000001230730ad pseudobond_group_new_pseudobond + 29
25 _ctypes.cpython-37m-darwin.so 0x000000010eddbe17 ffi_call_unix64 + 79
26 _ctypes.cpython-37m-darwin.so 0x000000010eddc6a5 ffi_call + 901
27 _ctypes.cpython-37m-darwin.so 0x000000010edd6f62 _ctypes_callproc + 882
28 _ctypes.cpython-37m-darwin.so 0x000000010edd06dc PyCFuncPtr_call + 1196
29 org.python.python 0x000000010b47c6ff _PyObject_FastCallKeywords + 575
30 org.python.python 0x000000010b551bdd call_function + 765
31 org.python.python 0x000000010b54e8be _PyEval_EvalFrameDefault + 26718
32 org.python.python 0x000000010b552a3c _PyEval_EvalCodeWithName + 3276
33 org.python.python 0x000000010b47c899 _PyFunction_FastCallKeywords + 217
34 org.python.python 0x000000010b551be4 call_function + 772
35 org.python.python 0x000000010b54e827 _PyEval_EvalFrameDefault + 26567
36 org.python.python 0x000000010b552a3c _PyEval_EvalCodeWithName + 3276
37 org.python.python 0x000000010b47c397 _PyFunction_FastCallDict + 455
38 org.python.python 0x000000010b54ea4a _PyEval_EvalFrameDefault + 27114
39 org.python.python 0x000000010b552a3c _PyEval_EvalCodeWithName + 3276
40 org.python.python 0x000000010b47c899 _PyFunction_FastCallKeywords + 217
41 org.python.python 0x000000010b551be4 call_function + 772
42 org.python.python 0x000000010b5485d4 _PyEval_EvalFrameDefault + 1396
43 org.python.python 0x000000010b552a3c _PyEval_EvalCodeWithName + 3276
44 org.python.python 0x000000010b47c899 _PyFunction_FastCallKeywords + 217
45 org.python.python 0x000000010b551be4 call_function + 772
46 org.python.python 0x000000010b54e8be _PyEval_EvalFrameDefault + 26718
47 org.python.python 0x000000010b47cd81 function_code_fastcall + 177
48 org.python.python 0x000000010b47d893 _PyObject_Call_Prepend + 131
49 org.python.python 0x000000010b47c9f8 PyObject_Call + 136
50 QtCore.so 0x000000011729bf17 PyQtSlot::call(_object*, _object*) const + 39
51 QtCore.so 0x000000011729be26 PyQtSlot::invoke(void**, _object*, void*, bool) const + 374
52 QtCore.so 0x000000011729c925 PyQtSlotProxy::unislot(void**) + 85
53 QtCore.so 0x000000011729c89a PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
54 QtCore 0x00000001151d313d QMetaObject::activate(QObject*, int, int, void**) + 1773
55 QtWidgets 0x000000011464a68c 0x1144a6000 + 1721996
56 QtCore 0x00000001151d368c QMetaObject::activate(QObject*, int, int, void**) + 3132
57 QtWidgets 0x00000001145a0e2f 0x1144a6000 + 1027631
58 QtWidgets 0x00000001145a0ccc 0x1144a6000 + 1027276
59 QtWidgets 0x00000001145a1dff QAbstractButton::mouseReleaseEvent(QMouseEvent*) + 271
60 QtWidgets 0x00000001144f23bd QWidget::event(QEvent*) + 445
61 QtWidgets 0x00000001144b667d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
62 QtWidgets 0x00000001144b94d8 QApplication::notify(QObject*, QEvent*) + 7336
63 QtWidgets.so 0x00000001140763ca sipQApplication::notify(QObject*, QEvent*) + 234
64 QtCore 0x00000001151a2324 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
65 QtWidgets 0x00000001144b6fa0 QApplicationPrivate::sendMouseEvent(QWidget*, QMouseEvent*, QWidget*, QWidget*, QWidget**, QPointer&, bool, bool) + 896
66 QtWidgets 0x000000011451190e 0x1144a6000 + 440590
67 QtWidgets 0x00000001145105c9 0x1144a6000 + 435657
68 QtWidgets 0x00000001144b667d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
69 QtWidgets 0x00000001144b7a82 QApplication::notify(QObject*, QEvent*) + 594
70 QtWidgets.so 0x00000001140763ca sipQApplication::notify(QObject*, QEvent*) + 234
71 QtCore 0x00000001151a2324 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
72 QtGui 0x0000000114a8b779 QGuiApplicationPrivate::processMouseEvent(QWindowSystemInterfacePrivate::MouseEvent*) + 3961
73 QtGui 0x0000000114a7246b QWindowSystemInterface::sendWindowSystemEvents(QFlags) + 219
74 libqcocoa.dylib 0x000000011f037900 0x11f001000 + 223488
75 libqcocoa.dylib 0x000000011f038068 0x11f001000 + 225384
76 com.apple.CoreFoundation 0x00007fff2d689d52 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
77 com.apple.CoreFoundation 0x00007fff2d689cf1 __CFRunLoopDoSource0 + 103
78 com.apple.CoreFoundation 0x00007fff2d689b0b __CFRunLoopDoSources0 + 209
79 com.apple.CoreFoundation 0x00007fff2d68883a __CFRunLoopRun + 927
80 com.apple.CoreFoundation 0x00007fff2d687e3e CFRunLoopRunSpecific + 462
81 com.apple.HIToolbox 0x00007fff2c2b4abd RunCurrentEventLoopInMode + 292
82 com.apple.HIToolbox 0x00007fff2c2b46f4 ReceiveNextEventCommon + 359
83 com.apple.HIToolbox 0x00007fff2c2b4579 _BlockUntilNextEventMatchingListInModeWithFilter + 64
84 com.apple.AppKit 0x00007fff2a8fa039 _DPSNextEvent + 883
85 com.apple.AppKit 0x00007fff2a8f8880 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1352
86 com.apple.AppKit 0x00007fff2a8ea58e -[NSApplication run] + 658
87 libqcocoa.dylib 0x000000011f036de3 0x11f001000 + 220643
88 QtCore 0x000000011519d93f QEventLoop::exec(QFlags) + 431
89 QtCore 0x00000001151a2932 QCoreApplication::exec() + 130
90 QtWidgets.so 0x00000001141657d2 meth_QApplication_exec_(_object*, _object*) + 82
91 org.python.python 0x000000010b47d3a2 _PyMethodDef_RawFastCallKeywords + 226
92 org.python.python 0x000000010b47c8d9 _PyCFunction_FastCallKeywords + 41
93 org.python.python 0x000000010b551b70 call_function + 656
94 org.python.python 0x000000010b54e827 _PyEval_EvalFrameDefault + 26567
95 org.python.python 0x000000010b47cd81 function_code_fastcall + 177
96 org.python.python 0x000000010b551be4 call_function + 772
97 org.python.python 0x000000010b54e827 _PyEval_EvalFrameDefault + 26567
98 org.python.python 0x000000010b552a3c _PyEval_EvalCodeWithName + 3276
99 org.python.python 0x000000010b47c899 _PyFunction_FastCallKeywords + 217
100 org.python.python 0x000000010b551be4 call_function + 772
101 org.python.python 0x000000010b54e8be _PyEval_EvalFrameDefault + 26718
102 org.python.python 0x000000010b552a3c _PyEval_EvalCodeWithName + 3276
103 org.python.python 0x000000010b547fc0 PyEval_EvalCode + 48
104 org.python.python 0x000000010b545557 builtin_exec + 583
105 org.python.python 0x000000010b47d54d _PyMethodDef_RawFastCallKeywords + 653
106 org.python.python 0x000000010b47c8d9 _PyCFunction_FastCallKeywords + 41
107 org.python.python 0x000000010b551b70 call_function + 656
108 org.python.python 0x000000010b54e8be _PyEval_EvalFrameDefault + 26718
109 org.python.python 0x000000010b552a3c _PyEval_EvalCodeWithName + 3276
110 org.python.python 0x000000010b47c899 _PyFunction_FastCallKeywords + 217
111 org.python.python 0x000000010b551be4 call_function + 772
112 org.python.python 0x000000010b54e8be _PyEval_EvalFrameDefault + 26718
113 org.python.python 0x000000010b552a3c _PyEval_EvalCodeWithName + 3276
114 org.python.python 0x000000010b47c397 _PyFunction_FastCallDict + 455
115 org.python.python 0x000000010b5acb03 pymain_run_module + 147
116 org.python.python 0x000000010b5abbec pymain_main + 5900
117 org.python.python 0x000000010b5aa4d3 Py_Main + 51
118 edu.ucsf.cgl.ChimeraX 0x000000010b44fdc8 main + 120
119 libdyld.dylib 0x00007fff6755bcc9 start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff6769f882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff67760425 _pthread_cond_wait + 698
2 libopenblasp-r0.3.7.dylib 0x000000010f6e8c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff67760109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6775bb8b thread_start + 15
Thread 2:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff6769cdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6769d170 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2d689ef5 __CFRunLoopServiceMachPort + 247
3 com.apple.CoreFoundation 0x00007fff2d6889c2 __CFRunLoopRun + 1319
4 com.apple.CoreFoundation 0x00007fff2d687e3e CFRunLoopRunSpecific + 462
5 com.apple.AppKit 0x00007fff2aa9b954 _NSEventThread + 132
6 libsystem_pthread.dylib 0x00007fff67760109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff6775bb8b thread_start + 15
Thread 3:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6769cdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6769d170 mach_msg + 60
2 QtWebEngineCore 0x0000000119b6932d 0x1179c7000 + 35267373
3 QtWebEngineCore 0x0000000119b6922f 0x1179c7000 + 35267119
4 QtWebEngineCore 0x0000000119b1d05d 0x1179c7000 + 34955357
5 QtWebEngineCore 0x0000000119b46085 0x1179c7000 + 35123333
6 QtWebEngineCore 0x0000000119b989bc 0x1179c7000 + 35461564
7 QtWebEngineCore 0x0000000119bd8717 0x1179c7000 + 35723031
8 libsystem_pthread.dylib 0x00007fff67760109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6775bb8b thread_start + 15
Thread 4:: DnsConfigService
0 libsystem_kernel.dylib 0x00007fff676a1766 kevent + 10
1 QtWebEngineCore 0x0000000119e2a9a9 0x1179c7000 + 38156713
2 QtWebEngineCore 0x0000000119e27cbd 0x1179c7000 + 38145213
3 QtWebEngineCore 0x0000000119bdecdc 0x1179c7000 + 35749084
4 QtWebEngineCore 0x0000000119b46085 0x1179c7000 + 35123333
5 QtWebEngineCore 0x0000000119b989bc 0x1179c7000 + 35461564
6 QtWebEngineCore 0x0000000119bd8717 0x1179c7000 + 35723031
7 libsystem_pthread.dylib 0x00007fff67760109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6775bb8b thread_start + 15
Thread 5:: TaskSchedulerServiceThread
0 libsystem_kernel.dylib 0x00007fff676a1766 kevent + 10
1 QtWebEngineCore 0x0000000119e2a9a9 0x1179c7000 + 38156713
2 QtWebEngineCore 0x0000000119e27cbd 0x1179c7000 + 38145213
3 QtWebEngineCore 0x0000000119bdecc4 0x1179c7000 + 35749060
4 QtWebEngineCore 0x0000000119b46085 0x1179c7000 + 35123333
5 QtWebEngineCore 0x0000000119b87a74 0x1179c7000 + 35392116
6 QtWebEngineCore 0x0000000119b989bc 0x1179c7000 + 35461564
7 QtWebEngineCore 0x0000000119bd8717 0x1179c7000 + 35723031
8 libsystem_pthread.dylib 0x00007fff67760109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6775bb8b thread_start + 15
Thread 6:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff6769cdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6769d170 mach_msg + 60
2 QtWebEngineCore 0x0000000119b6932d 0x1179c7000 + 35267373
3 QtWebEngineCore 0x0000000119b69421 0x1179c7000 + 35267617
4 QtWebEngineCore 0x0000000119b80d28 0x1179c7000 + 35364136
5 QtWebEngineCore 0x0000000119b8165b 0x1179c7000 + 35366491
6 QtWebEngineCore 0x0000000119b812c4 0x1179c7000 + 35365572
7 QtWebEngineCore 0x0000000119bd8717 0x1179c7000 + 35723031
8 libsystem_pthread.dylib 0x00007fff67760109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6775bb8b thread_start + 15
Thread 7:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff6769cdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6769d170 mach_msg + 60
2 QtWebEngineCore 0x0000000119b6932d 0x1179c7000 + 35267373
3 QtWebEngineCore 0x0000000119b69421 0x1179c7000 + 35267617
4 QtWebEngineCore 0x0000000119b80d28 0x1179c7000 + 35364136
5 QtWebEngineCore 0x0000000119b8165b 0x1179c7000 + 35366491
6 QtWebEngineCore 0x0000000119b812c4 0x1179c7000 + 35365572
7 QtWebEngineCore 0x0000000119bd8717 0x1179c7000 + 35723031
8 libsystem_pthread.dylib 0x00007fff67760109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6775bb8b thread_start + 15
Thread 8:: TaskSchedulerBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff6769cdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6769d170 mach_msg + 60
2 QtWebEngineCore 0x0000000119b6932d 0x1179c7000 + 35267373
3 QtWebEngineCore 0x0000000119b69421 0x1179c7000 + 35267617
4 QtWebEngineCore 0x0000000119b80d28 0x1179c7000 + 35364136
5 QtWebEngineCore 0x0000000119b8165b 0x1179c7000 + 35366491
6 QtWebEngineCore 0x0000000119b81234 0x1179c7000 + 35365428
7 QtWebEngineCore 0x0000000119bd8717 0x1179c7000 + 35723031
8 libsystem_pthread.dylib 0x00007fff67760109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6775bb8b thread_start + 15
Thread 9:: TaskSchedulerBackgroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff6769cdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6769d170 mach_msg + 60
2 QtWebEngineCore 0x0000000119b6932d 0x1179c7000 + 35267373
3 QtWebEngineCore 0x0000000119b69421 0x1179c7000 + 35267617
4 QtWebEngineCore 0x0000000119b80d28 0x1179c7000 + 35364136
5 QtWebEngineCore 0x0000000119b8165b 0x1179c7000 + 35366491
6 QtWebEngineCore 0x0000000119b81234 0x1179c7000 + 35365428
7 QtWebEngineCore 0x0000000119bd8717 0x1179c7000 + 35723031
8 libsystem_pthread.dylib 0x00007fff67760109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6775bb8b thread_start + 15
Thread 10:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff676a1766 kevent + 10
1 QtWebEngineCore 0x0000000119e2a9a9 0x1179c7000 + 38156713
2 QtWebEngineCore 0x0000000119e27cbd 0x1179c7000 + 38145213
3 QtWebEngineCore 0x0000000119bdecc4 0x1179c7000 + 35749060
4 QtWebEngineCore 0x0000000119b46085 0x1179c7000 + 35123333
5 QtWebEngineCore 0x00000001194b4fe4 0x1179c7000 + 28237796
6 QtWebEngineCore 0x0000000119b989bc 0x1179c7000 + 35461564
7 QtWebEngineCore 0x0000000119bd8717 0x1179c7000 + 35723031
8 libsystem_pthread.dylib 0x00007fff67760109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6775bb8b thread_start + 15
Thread 11:: TaskSchedulerSingleThreadSharedBackgroundBlocking0
0 libsystem_kernel.dylib 0x00007fff6769cdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6769d170 mach_msg + 60
2 QtWebEngineCore 0x0000000119b6932d 0x1179c7000 + 35267373
3 QtWebEngineCore 0x0000000119b6922f 0x1179c7000 + 35267119
4 QtWebEngineCore 0x0000000119b80d1a 0x1179c7000 + 35364122
5 QtWebEngineCore 0x0000000119b813bf 0x1179c7000 + 35365823
6 QtWebEngineCore 0x0000000119b81264 0x1179c7000 + 35365476
7 QtWebEngineCore 0x0000000119bd8717 0x1179c7000 + 35723031
8 libsystem_pthread.dylib 0x00007fff67760109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6775bb8b thread_start + 15
Thread 12:: CompositorTileWorker1/56835
0 libsystem_kernel.dylib 0x00007fff6769f882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff67760425 _pthread_cond_wait + 698
2 QtWebEngineCore 0x0000000119bd6fa8 0x1179c7000 + 35717032
3 QtWebEngineCore 0x000000011ab5d4c8 0x1179c7000 + 51995848
4 QtWebEngineCore 0x0000000119b97694 0x1179c7000 + 35456660
5 QtWebEngineCore 0x0000000119bd8717 0x1179c7000 + 35723031
6 libsystem_pthread.dylib 0x00007fff67760109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff6775bb8b thread_start + 15
Thread 13:: AudioThread
0 libsystem_kernel.dylib 0x00007fff6769cdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6769d170 mach_msg + 60
2 QtWebEngineCore 0x0000000119b6932d 0x1179c7000 + 35267373
3 QtWebEngineCore 0x0000000119b6922f 0x1179c7000 + 35267119
4 QtWebEngineCore 0x0000000119b1d05d 0x1179c7000 + 34955357
5 QtWebEngineCore 0x0000000119b46085 0x1179c7000 + 35123333
6 QtWebEngineCore 0x0000000119b989bc 0x1179c7000 + 35461564
7 QtWebEngineCore 0x0000000119bd8717 0x1179c7000 + 35723031
8 libsystem_pthread.dylib 0x00007fff67760109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6775bb8b thread_start + 15
Thread 14:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff6769cdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6769d170 mach_msg + 60
2 QtWebEngineCore 0x0000000119b6932d 0x1179c7000 + 35267373
3 QtWebEngineCore 0x0000000119b1d052 0x1179c7000 + 34955346
4 QtWebEngineCore 0x0000000119b46085 0x1179c7000 + 35123333
5 QtWebEngineCore 0x0000000119b989bc 0x1179c7000 + 35461564
6 QtWebEngineCore 0x0000000119bd8717 0x1179c7000 + 35723031
7 libsystem_pthread.dylib 0x00007fff67760109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6775bb8b thread_start + 15
Thread 15:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff676a1766 kevent + 10
1 QtWebEngineCore 0x0000000119e2a9a9 0x1179c7000 + 38156713
2 QtWebEngineCore 0x0000000119e27cbd 0x1179c7000 + 38145213
3 QtWebEngineCore 0x0000000119bdecdc 0x1179c7000 + 35749084
4 QtWebEngineCore 0x0000000119b46085 0x1179c7000 + 35123333
5 QtWebEngineCore 0x0000000119b989bc 0x1179c7000 + 35461564
6 QtWebEngineCore 0x0000000119bd8717 0x1179c7000 + 35723031
7 libsystem_pthread.dylib 0x00007fff67760109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6775bb8b thread_start + 15
Thread 16:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6769cdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6769d170 mach_msg + 60
2 QtWebEngineCore 0x0000000119b6932d 0x1179c7000 + 35267373
3 QtWebEngineCore 0x0000000119b6922f 0x1179c7000 + 35267119
4 QtWebEngineCore 0x0000000119b1d05d 0x1179c7000 + 34955357
5 QtWebEngineCore 0x0000000119b46085 0x1179c7000 + 35123333
6 QtWebEngineCore 0x0000000119b989bc 0x1179c7000 + 35461564
7 QtWebEngineCore 0x0000000119bd8717 0x1179c7000 + 35723031
8 libsystem_pthread.dylib 0x00007fff67760109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6775bb8b thread_start + 15
Thread 17:: TaskSchedulerSingleThreadForegroundBlocking1
0 libsystem_kernel.dylib 0x00007fff6769cdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6769d170 mach_msg + 60
2 QtWebEngineCore 0x0000000119b6932d 0x1179c7000 + 35267373
3 QtWebEngineCore 0x0000000119b6922f 0x1179c7000 + 35267119
4 QtWebEngineCore 0x0000000119b80d1a 0x1179c7000 + 35364122
5 QtWebEngineCore 0x0000000119b8165b 0x1179c7000 + 35366491
6 QtWebEngineCore 0x0000000119b81324 0x1179c7000 + 35365668
7 QtWebEngineCore 0x0000000119bd8717 0x1179c7000 + 35723031
8 libsystem_pthread.dylib 0x00007fff67760109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6775bb8b thread_start + 15
Thread 18:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6769cdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6769d170 mach_msg + 60
2 QtWebEngineCore 0x0000000119b6932d 0x1179c7000 + 35267373
3 QtWebEngineCore 0x0000000119b6922f 0x1179c7000 + 35267119
4 QtWebEngineCore 0x0000000119b1d05d 0x1179c7000 + 34955357
5 QtWebEngineCore 0x0000000119b46085 0x1179c7000 + 35123333
6 QtWebEngineCore 0x0000000119b989bc 0x1179c7000 + 35461564
7 QtWebEngineCore 0x0000000119bd8717 0x1179c7000 + 35723031
8 libsystem_pthread.dylib 0x00007fff67760109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6775bb8b thread_start + 15
Thread 19:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff6769cdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6769d170 mach_msg + 60
2 QtWebEngineCore 0x0000000119b6932d 0x1179c7000 + 35267373
3 QtWebEngineCore 0x0000000119b69421 0x1179c7000 + 35267617
4 QtWebEngineCore 0x0000000119b80d28 0x1179c7000 + 35364136
5 QtWebEngineCore 0x0000000119b8165b 0x1179c7000 + 35366491
6 QtWebEngineCore 0x0000000119b812c4 0x1179c7000 + 35365572
7 QtWebEngineCore 0x0000000119bd8717 0x1179c7000 + 35723031
8 libsystem_pthread.dylib 0x00007fff67760109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6775bb8b thread_start + 15
Thread 20:
0 libsystem_pthread.dylib 0x00007fff6775bb68 start_wqthread + 0
Thread 21:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff6769cdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6769d170 mach_msg + 60
2 QtWebEngineCore 0x0000000119b6932d 0x1179c7000 + 35267373
3 QtWebEngineCore 0x0000000119b69421 0x1179c7000 + 35267617
4 QtWebEngineCore 0x0000000119b80d28 0x1179c7000 + 35364136
5 QtWebEngineCore 0x0000000119b813bf 0x1179c7000 + 35365823
6 QtWebEngineCore 0x0000000119b812c4 0x1179c7000 + 35365572
7 QtWebEngineCore 0x0000000119bd8717 0x1179c7000 + 35723031
8 libsystem_pthread.dylib 0x00007fff67760109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6775bb8b thread_start + 15
Thread 22:
0 libsystem_pthread.dylib 0x00007fff6775bb68 start_wqthread + 0
Thread 23:
0 libsystem_kernel.dylib 0x00007fff6769f882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff67760425 _pthread_cond_wait + 698
2 org.python.python 0x000000010b5960bf PyThread_acquire_lock_timed + 351
3 org.python.python 0x000000010b5e19ef acquire_timed + 111
4 org.python.python 0x000000010b5e176c lock_PyThread_acquire_lock + 44
5 org.python.python 0x000000010b47d58a _PyMethodDef_RawFastCallKeywords + 714
6 org.python.python 0x000000010b483591 _PyMethodDescr_FastCallKeywords + 81
7 org.python.python 0x000000010b551c0e call_function + 814
8 org.python.python 0x000000010b54e80a _PyEval_EvalFrameDefault + 26538
9 org.python.python 0x000000010b552a3c _PyEval_EvalCodeWithName + 3276
10 org.python.python 0x000000010b47c899 _PyFunction_FastCallKeywords + 217
11 org.python.python 0x000000010b551be4 call_function + 772
12 org.python.python 0x000000010b54e80a _PyEval_EvalFrameDefault + 26538
13 org.python.python 0x000000010b552a3c _PyEval_EvalCodeWithName + 3276
14 org.python.python 0x000000010b47c899 _PyFunction_FastCallKeywords + 217
15 org.python.python 0x000000010b551be4 call_function + 772
16 org.python.python 0x000000010b54e80a _PyEval_EvalFrameDefault + 26538
17 org.python.python 0x000000010b47cd81 function_code_fastcall + 177
18 org.python.python 0x000000010b551be4 call_function + 772
19 org.python.python 0x000000010b54e80a _PyEval_EvalFrameDefault + 26538
20 org.python.python 0x000000010b47cd81 function_code_fastcall + 177
21 org.python.python 0x000000010b551be4 call_function + 772
22 org.python.python 0x000000010b54e80a _PyEval_EvalFrameDefault + 26538
23 org.python.python 0x000000010b47cd81 function_code_fastcall + 177
24 org.python.python 0x000000010b47d893 _PyObject_Call_Prepend + 131
25 org.python.python 0x000000010b47c9f8 PyObject_Call + 136
26 org.python.python 0x000000010b5e2297 t_bootstrap + 71
27 org.python.python 0x000000010b595d29 pythread_wrapper + 25
28 libsystem_pthread.dylib 0x00007fff67760109 _pthread_start + 148
29 libsystem_pthread.dylib 0x00007fff6775bb8b thread_start + 15
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000010f377dc0 rcx: 0x00007febb6677a58 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x00007febb6677a80 rsp: 0x00007febb6677a58
r8: 0x00007febb6677f48 r9: 0x6764336f760684fb r10: 0x000000010f377dc0 r11: 0x0000000000000246
r12: 0x0000000000000307 r13: 0x00000001357008d0 r14: 0x000000000000000b r15: 0x0000000000000016
rip: 0x00007fff676a333a rfl: 0x0000000000000246 cr2: 0x000000010b6b7fa4
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x7fff39155000 - 0x7fff393d8ffb com.apple.QuartzCore (1.11 - 841.4) /System/Library/Frameworks/QuartzCore.framework/Versions/A/QuartzCore
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0x7fff64819000 - 0x7fff64825fff libbz2.1.0.dylib (44) /usr/lib/libbz2.1.0.dylib
0x7fff64826000 - 0x7fff64878fff libc++.1.dylib (902.1) /usr/lib/libc++.1.dylib
0x7fff64879000 - 0x7fff6488effb libc++abi.dylib (902) /usr/lib/libc++abi.dylib
0x7fff6488f000 - 0x7fff6488ffff libcharset.1.dylib (59) /usr/lib/libcharset.1.dylib
0x7fff64890000 - 0x7fff648a1fff libcmph.dylib (8) /usr/lib/libcmph.dylib
0x7fff648a2000 - 0x7fff648b9fd7 libcompression.dylib (87) /usr/lib/libcompression.dylib
0x7fff64b93000 - 0x7fff64ba9ff7 libcoretls.dylib (167) /usr/lib/libcoretls.dylib
0x7fff64baa000 - 0x7fff64babfff libcoretls_cfhelpers.dylib (167) /usr/lib/libcoretls_cfhelpers.dylib
0x7fff6504e000 - 0x7fff65152fef libcrypto.44.dylib (47.140.1) /usr/lib/libcrypto.44.dylib
0x7fff65155000 - 0x7fff65160fff libcsfde.dylib (551) /usr/lib/libcsfde.dylib
0x7fff65168000 - 0x7fff651c7ff7 libcups.2.dylib (483.6) /usr/lib/libcups.2.dylib
0x7fff651c9000 - 0x7fff6522eff7 libcurl.4.dylib (118.120.2) /usr/lib/libcurl.4.dylib
0x7fff652d1000 - 0x7fff652d1fff libenergytrace.dylib (21) /usr/lib/libenergytrace.dylib
0x7fff652d2000 - 0x7fff652eafff libexpat.1.dylib (19.60.2) /usr/lib/libexpat.1.dylib
0x7fff652f8000 - 0x7fff652fafff libfakelink.dylib (149.1) /usr/lib/libfakelink.dylib
0x7fff65309000 - 0x7fff6530efff libgermantok.dylib (24) /usr/lib/libgermantok.dylib
0x7fff6530f000 - 0x7fff65318ff7 libheimdal-asn1.dylib (564.140.1) /usr/lib/libheimdal-asn1.dylib
0x7fff65319000 - 0x7fff65409fff libiconv.2.dylib (59) /usr/lib/libiconv.2.dylib
0x7fff6540a000 - 0x7fff65661fff libicucore.A.dylib (64260.0.1) /usr/lib/libicucore.A.dylib
0x7fff6567b000 - 0x7fff6567cfff liblangid.dylib (133) /usr/lib/liblangid.dylib
0x7fff6567d000 - 0x7fff65695ff3 liblzma.5.dylib (16) /usr/lib/liblzma.5.dylib
0x7fff656ad000 - 0x7fff65754ff7 libmecab.dylib (883.11) /usr/lib/libmecab.dylib
0x7fff65755000 - 0x7fff659b7ff1 libmecabra.dylib (883.11) /usr/lib/libmecabra.dylib
0x7fff65d24000 - 0x7fff65d53fff libncurses.5.4.dylib (57) /usr/lib/libncurses.5.4.dylib
0x7fff65e83000 - 0x7fff662ffff5 libnetwork.dylib (1880.120.4) /usr/lib/libnetwork.dylib
0x7fff66300000 - 0x7fff66317fff libnetworkextension.dylib (1095.140.2) /usr/lib/libnetworkextension.dylib
0x7fff663a0000 - 0x7fff663d3fde libobjc.A.dylib (787.1) /usr/lib/libobjc.A.dylib
0x7fff663d4000 - 0x7fff663d5ff7 libodfde.dylib (26) /usr/lib/libodfde.dylib
0x7fff663e6000 - 0x7fff663eafff libpam.2.dylib (25.100.1) /usr/lib/libpam.2.dylib
0x7fff663ed000 - 0x7fff66423ff7 libpcap.A.dylib (89.120.1) /usr/lib/libpcap.A.dylib
0x7fff66463000 - 0x7fff66471ff9 libperfcheck.dylib (37.100.2) /usr/lib/libperfcheck.dylib
0x7fff664a7000 - 0x7fff664bffff libresolv.9.dylib (67.40.1) /usr/lib/libresolv.9.dylib
0x7fff664c1000 - 0x7fff66505ff7 libsandbox.1.dylib (1217.141.1) /usr/lib/libsandbox.1.dylib
0x7fff66506000 - 0x7fff66518ff7 libsasl2.2.dylib (213.120.1) /usr/lib/libsasl2.2.dylib
0x7fff66519000 - 0x7fff6651aff7 libspindump.dylib (281.3) /usr/lib/libspindump.dylib
0x7fff6651b000 - 0x7fff66705ff7 libsqlite3.dylib (308.5) /usr/lib/libsqlite3.dylib
0x7fff667f9000 - 0x7fff66826ffb libssl.46.dylib (47.140.1) /usr/lib/libssl.46.dylib
0x7fff668fb000 - 0x7fff66955ff8 libusrtcp.dylib (1880.120.4) /usr/lib/libusrtcp.dylib
0x7fff66956000 - 0x7fff66959ffb libutil.dylib (57) /usr/lib/libutil.dylib
0x7fff6695a000 - 0x7fff66967ff7 libxar.1.dylib (425.2) /usr/lib/libxar.1.dylib
0x7fff6696d000 - 0x7fff66a4fff7 libxml2.2.dylib (33.4) /usr/lib/libxml2.2.dylib
0x7fff66a53000 - 0x7fff66a7bfff libxslt.1.dylib (16.9) /usr/lib/libxslt.1.dylib
0x7fff66a7c000 - 0x7fff66a8eff3 libz.1.dylib (76) /usr/lib/libz.1.dylib
0x7fff6733d000 - 0x7fff67342ff3 libcache.dylib (83) /usr/lib/system/libcache.dylib
0x7fff67343000 - 0x7fff6734efff libcommonCrypto.dylib (60165.120.1) /usr/lib/system/libcommonCrypto.dylib
0x7fff6734f000 - 0x7fff67356fff libcompiler_rt.dylib (101.2) /usr/lib/system/libcompiler_rt.dylib
0x7fff67357000 - 0x7fff67360ff7 libcopyfile.dylib (166.40.1) /usr/lib/system/libcopyfile.dylib
0x7fff67361000 - 0x7fff673f3fdb libcorecrypto.dylib (866.140.1) /usr/lib/system/libcorecrypto.dylib
0x7fff67500000 - 0x7fff67540ff0 libdispatch.dylib (1173.100.2) /usr/lib/system/libdispatch.dylib
0x7fff67541000 - 0x7fff67577fff libdyld.dylib (750.6) /usr/lib/system/libdyld.dylib
0x7fff67578000 - 0x7fff67578ffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib
0x7fff67579000 - 0x7fff67585ff3 libkxld.dylib (6153.141.1) /usr/lib/system/libkxld.dylib
0x7fff67586000 - 0x7fff67586ff7 liblaunch.dylib (1738.140.1) /usr/lib/system/liblaunch.dylib
0x7fff67587000 - 0x7fff6758cff7 libmacho.dylib (959.0.1) /usr/lib/system/libmacho.dylib
0x7fff6758d000 - 0x7fff6758fff3 libquarantine.dylib (110.40.3) /usr/lib/system/libquarantine.dylib
0x7fff67590000 - 0x7fff67591ff7 libremovefile.dylib (48) /usr/lib/system/libremovefile.dylib
0x7fff67592000 - 0x7fff675a9ff3 libsystem_asl.dylib (377.60.2) /usr/lib/system/libsystem_asl.dylib
0x7fff675aa000 - 0x7fff675aaff7 libsystem_blocks.dylib (74) /usr/lib/system/libsystem_blocks.dylib
0x7fff675ab000 - 0x7fff67632fff libsystem_c.dylib (1353.100.2) /usr/lib/system/libsystem_c.dylib
0x7fff67633000 - 0x7fff67636ffb libsystem_configuration.dylib (1061.141.1) /usr/lib/system/libsystem_configuration.dylib
0x7fff67637000 - 0x7fff6763afff libsystem_coreservices.dylib (114) /usr/lib/system/libsystem_coreservices.dylib
0x7fff6763b000 - 0x7fff67643fff libsystem_darwin.dylib (1353.100.2) /usr/lib/system/libsystem_darwin.dylib
0x7fff67644000 - 0x7fff6764bfff libsystem_dnssd.dylib (1096.100.3) /usr/lib/system/libsystem_dnssd.dylib
0x7fff6764c000 - 0x7fff6764dffb libsystem_featureflags.dylib (17) /usr/lib/system/libsystem_featureflags.dylib
0x7fff6764e000 - 0x7fff6769bff7 libsystem_info.dylib (538) /usr/lib/system/libsystem_info.dylib
0x7fff6769c000 - 0x7fff676c8ff7 libsystem_kernel.dylib (6153.141.1) /usr/lib/system/libsystem_kernel.dylib
0x7fff676c9000 - 0x7fff67710fff libsystem_m.dylib (3178) /usr/lib/system/libsystem_m.dylib
0x7fff67711000 - 0x7fff67738fff libsystem_malloc.dylib (283.100.6) /usr/lib/system/libsystem_malloc.dylib
0x7fff67739000 - 0x7fff67746ffb libsystem_networkextension.dylib (1095.140.2) /usr/lib/system/libsystem_networkextension.dylib
0x7fff67747000 - 0x7fff67750ff7 libsystem_notify.dylib (241.100.2) /usr/lib/system/libsystem_notify.dylib
0x7fff67751000 - 0x7fff67759fef libsystem_platform.dylib (220.100.1) /usr/lib/system/libsystem_platform.dylib
0x7fff6775a000 - 0x7fff67764fff libsystem_pthread.dylib (416.100.3) /usr/lib/system/libsystem_pthread.dylib
0x7fff67765000 - 0x7fff67769ff3 libsystem_sandbox.dylib (1217.141.1) /usr/lib/system/libsystem_sandbox.dylib
0x7fff6776a000 - 0x7fff6776cfff libsystem_secinit.dylib (62.100.2) /usr/lib/system/libsystem_secinit.dylib
0x7fff6776d000 - 0x7fff67774ffb libsystem_symptoms.dylib (1238.120.1) /usr/lib/system/libsystem_symptoms.dylib
0x7fff67775000 - 0x7fff6778bff2 libsystem_trace.dylib (1147.120) /usr/lib/system/libsystem_trace.dylib
0x7fff6778d000 - 0x7fff67792ff7 libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff67793000 - 0x7fff677c8ffe libxpc.dylib (1738.140.1) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 11
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 446237
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=939.4M resident=0K(0%) swapped_out_or_unallocated=939.4M(100%)
Writable regions: Total=931.4M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=931.4M(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 640K 5
Activity Tracing 256K 1
CG backing stores 2612K 7
CG image 1828K 31
CoreAnimation 4120K 76
CoreGraphics 8K 1
CoreImage 36K 5
CoreUI image data 3700K 31
Foundation 36K 2
Image IO 28K 3
Kernel Alloc Once 8K 1
MALLOC 258.0M 554
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
OpenGL GLSL 512K 6
PROTECTED_MEMORY 4K 1
STACK GUARD 92K 23
Stack 159.2M 24
Stack Guard 56.0M 1
VM_ALLOCATE 118.9M 351
__DATA 51.4M 544
__DATA_CONST 44K 4
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 413.5M 141
__OBJC_RO 32.3M 1
__OBJC_RW 1908K 2
__TEXT 525.9M 510
__UNICODE 564K 1
mapped file 191.2M 62
shared memory 660K 20
=========== ======= =======
TOTAL 2.2G 2420
TOTAL, minus reserved VM space 1.8G 2420
Log:
UCSF ChimeraX version: 1.1 (2020-09-09)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-14.7.8
OpenGL renderer: Intel(R) Iris(TM) Graphics 550
OpenGL vendor: Intel Inc.Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro13,2
Processor Name: Dual-Core Intel Core i5
Processor Speed: 2.9 GHz
Number of Processors: 1
Total Number of Cores: 2
L2 Cache (per Core): 256 KB
L3 Cache: 4 MB
Hyper-Threading Technology: Enabled
Memory: 8 GB
Boot ROM Version: 428.0.0.0.0
SMC Version (system): 2.37f24
Software:
System Software Overview:
System Version: macOS 10.15.6 (19G2021)
Kernel Version: Darwin 19.6.0
Time since boot: 18 days 5:42
Graphics/Displays:
Intel Iris Graphics 550:
Chipset Model: Intel Iris Graphics 550
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x1927
Revision ID: 0x000a
Metal: Supported, feature set macOS GPUFamily2 v1
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.9
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.0
Babel: 2.8.0
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.6.20
chardet: 3.0.4
ChimeraX-AddH: 2.1.1
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.6.1
ChimeraX-AtomSearch: 2.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.0.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.0
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.0
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.0
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-CommandLine: 1.1.3
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.1
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.0.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-DataFormats: 1.0
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.0
ChimeraX-Help: 1.0
ChimeraX-HKCage: 1.0
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.0
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.0
ChimeraX-Log: 1.1.1
ChimeraX-LookingGlass: 1.1
ChimeraX-Map: 1.0.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.1
ChimeraX-MDcrds: 2.0
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.0
ChimeraX-mmCIF: 2.2
ChimeraX-MMTF: 2.0
ChimeraX-Modeller: 1.0
ChimeraX-ModelPanel: 1.0
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.0
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0
ChimeraX-OpenCommand: 1.2.1
ChimeraX-PDB: 2.1
ChimeraX-PDBBio: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0
ChimeraX-PubChem: 2.0
ChimeraX-Read-Pbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.0
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.2
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.0.4
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.0
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0
ChimeraX-ToolshedUtils: 1.0
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.2.3
ChimeraX-uniprot: 2.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.20
decorator: 4.4.2
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.16
imagecodecs: 2020.5.30
imagecodecs-lite: 2020.1.31
imagesize: 1.2.0
ipykernel: 5.3.0
ipython: 7.15.0
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.3
jupyter-core: 4.6.3
kiwisolver: 1.2.0
line-profiler: 2.1.2
lxml: 4.5.1
MarkupSafe: 1.1.1
matplotlib: 3.2.1
msgpack: 1.0.0
netifaces: 0.10.9
networkx: 2.4
numexpr: 2.7.1
numpy: 1.18.5
numpydoc: 1.0.0
openvr: 1.12.501
packaging: 20.4
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.1.2
pip: 20.2.2
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.7
psutil: 5.7.0
ptyprocess: 0.6.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.6.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.12.3
PyQt5-sip: 4.19.19
PyQtWebEngine-commercial: 5.12.1
python-dateutil: 2.8.1
pytz: 2020.1
pyzmq: 19.0.2
qtconsole: 4.7.4
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.4.1
setuptools: 49.4.0
sfftk-rw: 0.6.6.dev0
six: 1.15.0
snowballstemmer: 2.0.0
sortedcontainers: 2.2.2
Sphinx: 3.1.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 1.0.3
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.4
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.6.3
tinyarray: 1.2.2
tornado: 6.0.4
traitlets: 5.0.4
urllib3: 1.25.10
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.34.2
Change History (2)
comment:1 by , 5 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Core |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash trying to allocate memory for Python object corresponding to new pseudobond |
comment:2 by , 5 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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