![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 5 years ago
Last modified 5 years ago
#3883 feedback defect
Largely trashed stack
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.15.1-x86_64-i386-64bit
ChimeraX Version: 1.2.dev202010240034 (2020-10-24 00:34:38 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [3530]
Path: /private/var/folders/*/ChimeraX_Daily.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.2.0 (1.2.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [3530]
User ID: 501
Date/Time: 2020-10-24 20:08:11.335 +0200
OS Version: Mac OS X 10.15.1 (19B88)
Report Version: 12
Anonymous UUID: 05C94178-4D8C-D3DA-71B6-B70B62957BEA
Sleep/Wake UUID: 8B3118F6-F604-42AD-A587-C1A677A7001F
Time Awake Since Boot: 11000 seconds
Time Since Wake: 6500 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain
Exception Type: EXC_BAD_ACCESS (SIGBUS)
Exception Codes: KERN_MEMORY_ERROR at 0x000000012d741a00
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0x12d741a00:
shared memory 000000012d6ff000-000000012d707000 [ 32K] r--/r-- SM=SHM
--> mapped file 000000012d707000-000000012d876000 [ 1468K] r-x/rwx SM=COW Object_id=201f1519
mapped file 000000012d876000-000000012d88e000 [ 96K] rw-/rwx SM=COW Object_id=20482319
Thread 0 Crashed:: CrBrowserMain
0 ??? 0x00007fff638a549a 0 + 140734863398042
1 ??? 0x00007fff637bd3a2 0 + 140734862447522
2 ??? 0x00007fff63957b1d 0 + 140734864128797
3 ChimeraX 000000000000000000 0 + 0
4 ??? 0x00007fff2c472594 0 + 140733936248212
5 ??? 0x00007fff2c415a20 0 + 140733935868448
6 ??? 0x00007fff2c414fe3 0 + 140733935865827
7 ??? 0x00007fff2af9c67d 0 + 140733914400381
8 ??? 0x00007fff2af9c3bd 0 + 140733914399677
9 ??? 0x00007fff2af9c147 0 + 140733914399047
10 ??? 0x00007fff29621864 0 + 140733887682660
11 ??? 0x00007fff296205d4 0 + 140733887677908
12 ??? 0x00007fff2961ad76 0 + 140733887655286
13 ??? 0x000000012d74064f 0 + 5057545807
14 ??? 0x000000011e2538ef 0 + 4800723183
15 ??? 0x000000011e257e62 0 + 4800740962
16 ??? 0x0000000110f8b702 0 + 4579702530
17 ??? 0x000000010dddbfe3 0 + 4527603683
18 ??? 0x000000010dddb956 0 + 4527602006
19 ??? 0x000000010dec2274 0 + 4528546420
20 ??? 0x000000010debeeb6 0 + 4528533174
21 ??? 0x000000010dddc2e1 0 + 4527604449
22 ??? 0x000000010dddee2b 0 + 4527615531
23 ??? 0x000000010dec2142 0 + 4528546114
24 ??? 0x000000010debeeb6 0 + 4528533174
25 ??? 0x000000010dec33af 0 + 4528550831
26 ??? 0x000000010dddc453 0 + 4527604819
27 ??? 0x000000010dec2142 0 + 4528546114
28 ??? 0x000000010debef4c 0 + 4528533324
29 ??? 0x000000010dec33af 0 + 4528550831
30 ??? 0x000000010deb7dd0 0 + 4528504272
31 ??? 0x000000010deb5125 0 + 4528492837
32 ??? 0x000000010de1be21 0 + 4527865377
33 ??? 0x000000010dec2142 0 + 4528546114
34 ??? 0x000000010debef4c 0 + 4528533324
35 ??? 0x000000010dec33af 0 + 4528550831
36 ??? 0x000000010dddc453 0 + 4527604819
37 ??? 0x000000010dec2142 0 + 4528546114
38 ??? 0x000000010debef4c 0 + 4528533324
39 ??? 0x000000010dec33af 0 + 4528550831
40 ??? 0x000000010dddc453 0 + 4527604819
41 ??? 0x000000010dddbc9c 0 + 4527602844
42 ??? 0x000000010df2afa3 0 + 4528975779
43 ??? 0x000000010df2a54d 0 + 4528973133
44 ??? 0x000000010df2ae7b 0 + 4528975483
45 ??? 0x000000010df2accb 0 + 4528975051
46 ??? 0x000000010ddabdc8 0 + 4527406536
47 ??? 0x00007fff637562e5 0 + 140734862025445
Thread 1:
0 ??? 0x00007fff638a2916 0 + 140734863386902
1 ??? 0x000000011196e27b 0 + 4590068347
2 ??? 0x00007fff63962d36 0 + 140734864174390
3 ??? 0x00007fff6395f58f 0 + 140734864160143
Thread 2:
0 ??? 0x00007fff638a2916 0 + 140734863386902
1 ??? 0x000000011196e27b 0 + 4590068347
2 ??? 0x00007fff63962d36 0 + 140734864174390
3 ??? 0x00007fff6395f58f 0 + 140734864160143
Thread 3:
0 ??? 0x00007fff638a2916 0 + 140734863386902
1 ??? 0x000000011196e27b 0 + 4590068347
2 ??? 0x00007fff63962d36 0 + 140734864174390
3 ??? 0x00007fff6395f58f 0 + 140734864160143
Thread 4:
0 ??? 0x00007fff6395f56c 0 + 140734864160108
Thread 5:: com.apple.NSEventThread
0 ??? 0x00007fff6389f166 0 + 140734863372646
1 ??? 0x00007fff6389f6cc 0 + 140734863374028
2 ??? 0x00007fff2c41636b 0 + 140733935870827
3 ??? 0x00007fff2c415907 0 + 140733935868167
4 ??? 0x00007fff2c414fe3 0 + 140733935865827
5 ??? 0x00007fff29628dba 0 + 140733887712698
6 ??? 0x00007fff63962d36 0 + 140734864174390
7 ??? 0x00007fff6395f58f 0 + 140734864160143
Thread 6:
0 ??? 0x00007fff6395f56c 0 + 140734864160108
Thread 7:: ThreadPoolServiceThread
0 ??? 0x00007fff638a72da 0 + 140734863405786
1 ??? 0x0000000122fe6597 0 + 4882064791
2 ??? 0x0000000122f702af 0 + 4881580719
3 ??? 0x0000000122f33b6f 0 + 4881333103
4 ??? 0x0000000122f79224 0 + 4881617444
5 ??? 0x0000000122f8d0dd 0 + 4881699037
6 ??? 0x0000000122fd44c7 0 + 4881990855
7 ??? 0x00007fff63962d36 0 + 140734864174390
8 ??? 0x00007fff6395f58f 0 + 140734864160143
Thread 8:: ThreadPoolForegroundWorker
0 ??? 0x00007fff6389f166 0 + 140734863372646
1 ??? 0x00007fff6389f6cc 0 + 140734863374028
2 ??? 0x0000000122fdbe65 0 + 4882021989
3 ??? 0x0000000122f84be8 0 + 4881665000
4 ??? 0x0000000122f85444 0 + 4881667140
5 ??? 0x0000000122f85144 0 + 4881666372
6 ??? 0x0000000122fd44c7 0 + 4881990855
7 ??? 0x00007fff63962d36 0 + 140734864174390
8 ??? 0x00007fff6395f58f 0 + 140734864160143
Thread 9:: ThreadPoolBackgroundWorker
0 ??? 0x00007fff6389f166 0 + 140734863372646
1 ??? 0x00007fff6389f6cc 0 + 140734863374028
2 ??? 0x0000000122fdbe65 0 + 4882021989
3 ??? 0x0000000122f84be8 0 + 4881665000
4 ??? 0x0000000122f8522e 0 + 4881666606
5 ??? 0x0000000122f850b4 0 + 4881666228
6 ??? 0x0000000122fd44c7 0 + 4881990855
7 ??? 0x00007fff63962d36 0 + 140734864174390
8 ??? 0x00007fff6395f58f 0 + 140734864160143
Thread 10:: Chrome_IOThread
0 ??? 0x00007fff638a72da 0 + 140734863405786
1 ??? 0x0000000122fe6597 0 + 4882064791
2 ??? 0x0000000122f702af 0 + 4881580719
3 ??? 0x0000000122f33b6f 0 + 4881333103
4 ??? 0x0000000126ee13c4 0 + 4948104132
5 ??? 0x0000000122f8d0dd 0 + 4881699037
6 ??? 0x0000000122fd44c7 0 + 4881990855
7 ??? 0x00007fff63962d36 0 + 140734864174390
8 ??? 0x00007fff6395f58f 0 + 140734864160143
Thread 11:: NetworkConfigWatcher
0 ??? 0x00007fff6389f166 0 + 140734863372646
1 ??? 0x00007fff6389f6cc 0 + 140734863374028
2 ??? 0x0000000122fdbe65 0 + 4882021989
3 ??? 0x0000000122fdbcbf 0 + 4882021567
4 ??? 0x0000000122f09e4b 0 + 4881161803
5 ??? 0x0000000122f702af 0 + 4881580719
6 ??? 0x0000000122f33b6f 0 + 4881333103
7 ??? 0x0000000122f8d0dd 0 + 4881699037
8 ??? 0x0000000122fd44c7 0 + 4881990855
9 ??? 0x00007fff63962d36 0 + 140734864174390
10 ??? 0x00007fff6395f58f 0 + 140734864160143
Thread 12:: ThreadPoolForegroundWorker
0 ??? 0x00007fff6389f166 0 + 140734863372646
1 ??? 0x00007fff6389f6cc 0 + 140734863374028
2 ??? 0x0000000122fdbe65 0 + 4882021989
3 ??? 0x0000000122f84be8 0 + 4881665000
4 ??? 0x0000000122f85444 0 + 4881667140
5 ??? 0x0000000122f85144 0 + 4881666372
6 ??? 0x0000000122fd44c7 0 + 4881990855
7 ??? 0x00007fff63962d36 0 + 140734864174390
8 ??? 0x00007fff6395f58f 0 + 140734864160143
Thread 13:: ThreadPoolForegroundWorker
0 ??? 0x00007fff6389f166 0 + 140734863372646
1 ??? 0x00007fff6389f6cc 0 + 140734863374028
2 ??? 0x0000000122fdbe65 0 + 4882021989
3 ??? 0x0000000122f84be8 0 + 4881665000
4 ??? 0x0000000122f85444 0 + 4881667140
5 ??? 0x0000000122f85144 0 + 4881666372
6 ??? 0x0000000122fd44c7 0 + 4881990855
7 ??? 0x00007fff63962d36 0 + 140734864174390
8 ??? 0x00007fff6395f58f 0 + 140734864160143
Thread 14:: CompositorTileWorker1
0 ??? 0x00007fff638a2916 0 + 140734863386902
1 ??? 0x0000000122fd3555 0 + 4881986901
2 ??? 0x0000000124308f38 0 + 4902129464
3 ??? 0x0000000122fd44c7 0 + 4881990855
4 ??? 0x00007fff63962d36 0 + 140734864174390
5 ??? 0x00007fff6395f58f 0 + 140734864160143
Thread 15:: Chrome_InProcGpuThread
0 ??? 0x00007fff6389f166 0 + 140734863372646
1 ??? 0x00007fff6389f6cc 0 + 140734863374028
2 ??? 0x0000000122fdbe65 0 + 4882021989
3 ??? 0x0000000122f09e7f 0 + 4881161855
4 ??? 0x0000000122f702af 0 + 4881580719
5 ??? 0x0000000122f33b6f 0 + 4881333103
6 ??? 0x0000000122f8d0dd 0 + 4881699037
7 ??? 0x0000000122fd44c7 0 + 4881990855
8 ??? 0x00007fff63962d36 0 + 140734864174390
9 ??? 0x00007fff6395f58f 0 + 140734864160143
Thread 16:: Chrome_ChildIOThread
0 ??? 0x00007fff638a72da 0 + 140734863405786
1 ??? 0x0000000122fe6597 0 + 4882064791
2 ??? 0x0000000122f702af 0 + 4881580719
3 ??? 0x0000000122f33b6f 0 + 4881333103
4 ??? 0x0000000122f8d0dd 0 + 4881699037
5 ??? 0x0000000122fd44c7 0 + 4881990855
6 ??? 0x00007fff63962d36 0 + 140734864174390
7 ??? 0x00007fff6395f58f 0 + 140734864160143
Thread 17:: VizCompositorThread
0 ??? 0x00007fff6389f166 0 + 140734863372646
1 ??? 0x00007fff6389f6cc 0 + 140734863374028
2 ??? 0x0000000122fdbe65 0 + 4882021989
3 ??? 0x0000000122fdbcbf 0 + 4882021567
4 ??? 0x0000000122f09e4b 0 + 4881161803
5 ??? 0x0000000122f702af 0 + 4881580719
6 ??? 0x0000000122f33b6f 0 + 4881333103
7 ??? 0x0000000122f8d0dd 0 + 4881699037
8 ??? 0x0000000122fd44c7 0 + 4881990855
9 ??? 0x00007fff63962d36 0 + 140734864174390
10 ??? 0x00007fff6395f58f 0 + 140734864160143
Thread 18:: NetworkConfigWatcher
0 ??? 0x00007fff6389f166 0 + 140734863372646
1 ??? 0x00007fff6389f6cc 0 + 140734863374028
2 ??? 0x0000000122fdbe65 0 + 4882021989
3 ??? 0x0000000122fdbcbf 0 + 4882021567
4 ??? 0x0000000122f09e4b 0 + 4881161803
5 ??? 0x0000000122f702af 0 + 4881580719
6 ??? 0x0000000122f33b6f 0 + 4881333103
7 ??? 0x0000000122f8d0dd 0 + 4881699037
8 ??? 0x0000000122fd44c7 0 + 4881990855
9 ??? 0x00007fff63962d36 0 + 140734864174390
10 ??? 0x00007fff6395f58f 0 + 140734864160143
Thread 19:: NetworkConfigWatcher
0 ??? 0x00007fff6389f166 0 + 140734863372646
1 ??? 0x00007fff6389f6cc 0 + 140734863374028
2 ??? 0x0000000122fdbe65 0 + 4882021989
3 ??? 0x0000000122fdbcbf 0 + 4882021567
4 ??? 0x0000000122f09e4b 0 + 4881161803
5 ??? 0x0000000122f702af 0 + 4881580719
6 ??? 0x0000000122f33b6f 0 + 4881333103
7 ??? 0x0000000122f8d0dd 0 + 4881699037
8 ??? 0x0000000122fd44c7 0 + 4881990855
9 ??? 0x00007fff63962d36 0 + 140734864174390
10 ??? 0x00007fff6395f58f 0 + 140734864160143
Thread 20:: ThreadPoolSingleThreadForegroundBlocking0
0 ??? 0x00007fff6389f166 0 + 140734863372646
1 ??? 0x00007fff6389f6cc 0 + 140734863374028
2 ??? 0x0000000122fdbe65 0 + 4882021989
3 ??? 0x0000000122fdbcbf 0 + 4882021567
4 ??? 0x0000000122f84bda 0 + 4881664986
5 ??? 0x0000000122f85444 0 + 4881667140
6 ??? 0x0000000122f851a4 0 + 4881666468
7 ??? 0x0000000122fd44c7 0 + 4881990855
8 ??? 0x00007fff63962d36 0 + 140734864174390
9 ??? 0x00007fff6395f58f 0 + 140734864160143
Thread 21:: Thread (pooled)
0 ??? 0x00007fff638a2916 0 + 140734863386902
1 ??? 0x000000011e089d2f 0 + 4798848303
2 ??? 0x000000011e0899fe 0 + 4798847486
3 ??? 0x000000011e08991d 0 + 4798847261
4 ??? 0x000000011e085f0d 0 + 4798832397
5 ??? 0x000000011e081859 0 + 4798814297
6 ??? 0x00007fff63962d36 0 + 140734864174390
7 ??? 0x00007fff6395f58f 0 + 140734864160143
Thread 22:: Thread (pooled)
0 ??? 0x00007fff638a2916 0 + 140734863386902
1 ??? 0x000000011e089d2f 0 + 4798848303
2 ??? 0x000000011e0899fe 0 + 4798847486
3 ??? 0x000000011e08991d 0 + 4798847261
4 ??? 0x000000011e085f0d 0 + 4798832397
5 ??? 0x000000011e081859 0 + 4798814297
6 ??? 0x00007fff63962d36 0 + 140734864174390
7 ??? 0x00007fff6395f58f 0 + 140734864160143
Thread 23:: Thread (pooled)
0 ??? 0x00007fff638a2916 0 + 140734863386902
1 ??? 0x000000011e089d2f 0 + 4798848303
2 ??? 0x000000011e0899fe 0 + 4798847486
3 ??? 0x000000011e08991d 0 + 4798847261
4 ??? 0x000000011e085f0d 0 + 4798832397
5 ??? 0x000000011e081859 0 + 4798814297
6 ??? 0x00007fff63962d36 0 + 140734864174390
7 ??? 0x00007fff6395f58f 0 + 140734864160143
Thread 24:: Thread (pooled)
0 ??? 0x00007fff638a2916 0 + 140734863386902
1 ??? 0x000000011e089d2f 0 + 4798848303
2 ??? 0x000000011e0899fe 0 + 4798847486
3 ??? 0x000000011e08991d 0 + 4798847261
4 ??? 0x000000011e085f0d 0 + 4798832397
5 ??? 0x000000011e081859 0 + 4798814297
6 ??? 0x00007fff63962d36 0 + 140734864174390
7 ??? 0x00007fff6395f58f 0 + 140734864160143
Thread 25:: Thread (pooled)
0 ??? 0x00007fff638a2916 0 + 140734863386902
1 ??? 0x000000011e089d2f 0 + 4798848303
2 ??? 0x000000011e0899fe 0 + 4798847486
3 ??? 0x000000011e08991d 0 + 4798847261
4 ??? 0x000000011e085f0d 0 + 4798832397
5 ??? 0x000000011e081859 0 + 4798814297
6 ??? 0x00007fff63962d36 0 + 140734864174390
7 ??? 0x00007fff6395f58f 0 + 140734864160143
Thread 26:: Thread (pooled)
0 ??? 0x00007fff638a2916 0 + 140734863386902
1 ??? 0x000000011e089d2f 0 + 4798848303
2 ??? 0x000000011e0899fe 0 + 4798847486
3 ??? 0x000000011e08991d 0 + 4798847261
4 ??? 0x000000011e085f0d 0 + 4798832397
5 ??? 0x000000011e081859 0 + 4798814297
6 ??? 0x00007fff63962d36 0 + 140734864174390
7 ??? 0x00007fff6395f58f 0 + 140734864160143
Thread 27:: Thread (pooled)
0 ??? 0x00007fff638a2916 0 + 140734863386902
1 ??? 0x000000011e089d2f 0 + 4798848303
2 ??? 0x000000011e0899fe 0 + 4798847486
3 ??? 0x000000011e08991d 0 + 4798847261
4 ??? 0x000000011e085f0d 0 + 4798832397
5 ??? 0x000000011e081859 0 + 4798814297
6 ??? 0x00007fff63962d36 0 + 140734864174390
7 ??? 0x00007fff6395f58f 0 + 140734864160143
Thread 28:: Thread (pooled)
0 ??? 0x00007fff638a2916 0 + 140734863386902
1 ??? 0x000000011e089d2f 0 + 4798848303
2 ??? 0x000000011e0899fe 0 + 4798847486
3 ??? 0x000000011e08991d 0 + 4798847261
4 ??? 0x000000011e085f0d 0 + 4798832397
5 ??? 0x000000011e081859 0 + 4798814297
6 ??? 0x00007fff63962d36 0 + 140734864174390
7 ??? 0x00007fff6395f58f 0 + 140734864160143
Thread 29:: NetworkConfigWatcher
0 ??? 0x00007fff6389f166 0 + 140734863372646
1 ??? 0x00007fff6389f6cc 0 + 140734863374028
2 ??? 0x0000000122fdbe65 0 + 4882021989
3 ??? 0x0000000122fdbcbf 0 + 4882021567
4 ??? 0x0000000122f09e4b 0 + 4881161803
5 ??? 0x0000000122f702af 0 + 4881580719
6 ??? 0x0000000122f33b6f 0 + 4881333103
7 ??? 0x0000000122f8d0dd 0 + 4881699037
8 ??? 0x0000000122fd44c7 0 + 4881990855
9 ??? 0x00007fff63962d36 0 + 140734864174390
10 ??? 0x00007fff6395f58f 0 + 140734864160143
Thread 30:
0 ??? 0x00007fff6395f56c 0 + 140734864160108
Thread 31:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 ??? 0x00007fff6389f166 0 + 140734863372646
1 ??? 0x00007fff6389f6cc 0 + 140734863374028
2 ??? 0x0000000122fdbe65 0 + 4882021989
3 ??? 0x0000000122fdbcbf 0 + 4882021567
4 ??? 0x0000000122f84bda 0 + 4881664986
5 ??? 0x0000000122f8522e 0 + 4881666606
6 ??? 0x0000000122f850e4 0 + 4881666276
7 ??? 0x0000000122fd44c7 0 + 4881990855
8 ??? 0x00007fff63962d36 0 + 140734864174390
9 ??? 0x00007fff6395f58f 0 + 140734864160143
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x00000001115fadc0 rcx: 0x000000010e2b3a58 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x000000000000000a rbp: 0x000000010e2b3a80 rsp: 0x000000010e2b3a58
r8: 0x000000010e2b3f48 r9: 0x5bdaa03b992eb2a8 r10: 0x00000001115fae6c r11: 0x0000000000000246
r12: 0x0000000000000307 r13: 0x0000000000000040 r14: 0x000000000000000a r15: 0x0000000000000016
rip: 0x00007fff638a549a rfl: 0x0000000000000246 cr2: 0x000000010e2b3f48
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
0 - 0xffffffffffffffff +ChimeraX (???) /private/var/folders/*/ChimeraX_Daily.app/Contents/MacOS/ChimeraX
0x111531000 - 0x1115c1b5f dyld (733.6) /usr/lib/dyld
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 2
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 7121
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=804K resident=0K(0%) swapped_out_or_unallocated=804K(100%)
Writable regions: Total=983.5M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=983.5M(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 128K 1
Activity Tracing 256K 1
CG backing stores 992K 2
CG image 52K 4
CoreAnimation 96K 10
CoreGraphics 8K 1
CoreImage 24K 2
CoreUI image data 1916K 15
Foundation 4K 1
Kernel Alloc Once 28K 2
MALLOC 282.1M 280
MALLOC guard page 32K 7
MALLOC_LARGE (reserved) 256K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
Mach message 24K 3
Memory Tag 242 12K 1
OpenGL GLSL 384K 5
STACK GUARD 124K 31
Stack 143.7M 32
Stack Guard 56.0M 1
VM_ALLOCATE 135.0M 241
VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)
__DATA 216K 2
__DATA_CONST 20K 1
__LINKEDIT 224K 1
__TEXT 580K 1
dylib 2104K 24
dylib (reserved) 20K 4 reserved VM address space (unallocated)
mapped file 726.5M 450
shared memory 4392K 37
=========== ======= =======
TOTAL 1.7G 1163
TOTAL, minus reserved VM space 1.3G 1163
System Profile:
Network Service: Wi-Fi, AirPort, en0
Thunderbolt Bus: MacBook Pro, Apple Inc., 27.1
Boot Volume File System Type: apfs
Memory Module: BANK 0/DIMM0, 8 GB, DDR3, 1600 MHz, 0x802C, 0x31364B544631473634485A2D314736453120
Memory Module: BANK 1/DIMM0, 8 GB, DDR3, 1600 MHz, 0x802C, 0x31364B544631473634485A2D314736453120
USB Device: USB 3.0 Bus
USB Device: Apple Internal Keyboard / Trackpad
USB Device: Bluetooth USB Host Controller
Serial ATA Device: APPLE SSD SM0512G, 500.28 GB
Model: MacBookPro11,5, BootROM 195.0.0.0.0, 4 processors, Quad-Core Intel Core i7, 2.5 GHz, 16 GB, SMC 2.30f2
Graphics: kHW_AMDRadeonR9M370XItem, AMD Radeon R9 M370X, spdisplays_pcie_device, 2 GB
Graphics: kHW_IntelIrisProItem, Intel Iris Pro, spdisplays_builtin
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x152), Broadcom BCM43xx 1.0 (7.77.106.3 AirPortDriverBrcmNIC-1435.3)
Bluetooth: Version 7.0.1f1, 3 services, 27 devices, 1 incoming serial ports
Log:
UCSF ChimeraX version: 1.2.dev202010240034 (2020-10-24)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 ATI-3.2.24
OpenGL renderer: AMD Radeon R9 M370X OpenGL Engine
OpenGL vendor: ATI Technologies Inc.Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro11,5
Processor Name: Quad-Core Intel Core i7
Processor Speed: 2,5 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 6 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
Boot ROM Version: 195.0.0.0.0
SMC Version (system): 2.30f2
Software:
System Software Overview:
System Version: macOS 10.15.1 (19B88)
Kernel Version: Darwin 19.0.0
Time since boot: 3:11
Graphics/Displays:
AMD Radeon R9 M370X:
Chipset Model: AMD Radeon R9 M370X
Type: GPU
Bus: PCIe
PCIe Lane Width: x8
VRAM (Total): 2 GB
Vendor: AMD (0x1002)
Device ID: 0x6821
Revision ID: 0x0083
ROM Revision: 113-C5670E-945
VBIOS Version: 113-C567A1-006
EFI Driver Version: 01.00.945
Automatic Graphics Switching: Supported
gMux Version: 4.0.20 [3.2.8]
Metal: Supported, feature set macOS GPUFamily2 v1
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2880 x 1800 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Intel Iris Pro:
Chipset Model: Intel Iris Pro
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x0d26
Revision ID: 0x0008
Automatic Graphics Switching: Supported
gMux Version: 4.0.20 [3.2.8]
Metal: Supported, feature set macOS GPUFamily1 v4
Locale: (None, 'UTF-8')
PyQt version: 5.15.1
Compiled Qt version: 5.15.1
Runtime Qt version: 5.15.1
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.0
Babel: 2.8.0
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.6.20
cftime: 1.2.1
chardet: 3.0.4
ChimeraX-AddH: 2.1.3
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.9.3
ChimeraX-AtomicLibrary: 1.1
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.2
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.0
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.1
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-CommandLine: 1.1.3
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.2.dev202010240034
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.0.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-DataFormats: 1.0.1
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.1
ChimeraX-Help: 1.0
ChimeraX-HKCage: 1.0
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.1
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.1
ChimeraX-Log: 1.1.1
ChimeraX-LookingGlass: 1.1
ChimeraX-Map: 1.0.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.1
ChimeraX-MDcrds: 2.1
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.0
ChimeraX-mmCIF: 2.2
ChimeraX-MMTF: 2.0
ChimeraX-Modeller: 1.0
ChimeraX-ModelPanel: 1.0
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.0
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0
ChimeraX-OpenCommand: 1.3.1
ChimeraX-PDB: 2.2
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.0.1
ChimeraX-Read-Pbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.2.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.2.1
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.2.2
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.0
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0
ChimeraX-ToolshedUtils: 1.0
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.3.1
ChimeraX-uniprot: 2.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.21
decorator: 4.4.2
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.17
imagecodecs: 2020.5.30
imagecodecs-lite: 2020.1.31
imagesize: 1.2.0
ipykernel: 5.3.4
ipython: 7.18.1
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.7
jupyter-core: 4.6.3
kiwisolver: 1.2.0
line-profiler: 2.1.2
lxml: 4.5.2
MarkupSafe: 1.1.1
matplotlib: 3.3.2
msgpack: 1.0.0
netCDF4: 1.5.4
netifaces: 0.10.9
networkx: 2.5
numexpr: 2.7.1
numpy: 1.19.2
numpydoc: 1.1.0
openvr: 1.14.1501
packaging: 20.4
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.2.0
pip: 20.2.3
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.8
psutil: 5.7.2
ptyprocess: 0.6.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.7.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.15.1
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.1
python-dateutil: 2.8.1
pytz: 2020.1
pyzmq: 19.0.2
qtconsole: 4.7.7
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.5.2
setuptools: 50.3.0
sfftk-rw: 0.6.6.dev0
six: 1.15.0
snowballstemmer: 2.0.0
sortedcontainers: 2.2.2
Sphinx: 3.2.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 1.0.3
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.4
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.9.3
tinyarray: 1.2.3
tornado: 6.0.4
traitlets: 5.0.5
urllib3: 1.25.11
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.34.2
Change History (2)
comment:1 by , 5 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Core |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Largely trashed stack |
comment:2 by , 5 years ago
| Status: | accepted → feedback |
|---|
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Hi Aurore,
--Eric