![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Jan 2, 2020:
- 7:02 PM Ticket #2715 (Two H-bond pseudobonds between same atom pair) created by
- […]
- 12:41 PM Ticket #2714 (Allow custom option on Open File dialog) created by
- Would like to allow custom options on the Open File dialog for …
- 11:22 AM Ticket #2698 (OpenGL buffer "None" was not deleted before core.graphics.Buffer destroyed) closed by
- duplicate: The OpenGL buffer not deleted warning related to selection were fixed …
- 10:33 AM Ticket #2713 (Clashes: "Include intramolecule" option throws error) created by
- […]
- 9:18 AM Ticket #2712 (A lot of array size mismatches after deletions) created by
- […]
- 8:13 AM Ticket #2711 (Apparently harmless error when building Clipper) created by
- […]
- 6:07 AM Ticket #2710 (Somewhat mysterious warning when building bundles) created by
- […]
- 2:21 AM Ticket #2709 (No bonds for residue UNL (unknown ligand) in 6dhf) created by
- […]
- 2:15 AM Ticket #2708 (AddH: 5ky0: list index out of range while finding roomiest) created by
- […]
Dec 31, 2019:
- 4:15 PM Ticket #2707 (Problem showing Toolbar help: failed to load external entity) created by
- […]
- 11:02 AM Ticket #2706 (Problem with item chooser) created by
- […]
- 10:54 AM Ticket #2705 (Problem with item chooser) created by
- […]
Dec 30, 2019:
Dec 28, 2019:
Dec 26, 2019:
Dec 25, 2019:
Dec 23, 2019:
- 7:00 PM Ticket #2699 (Problem with Map Eraser closing models during session close) closed by
- duplicate: This was fixed Nov 14, 2019. Get the daily build. Duplicate of #2577
- 3:37 PM ChangeLog edited by
- (diff)
- 9:44 AM Milestone 0.91 completed
Dec 21, 2019:
Dec 20, 2019:
- 8:05 PM Ticket #2698 (OpenGL buffer "None" was not deleted before core.graphics.Buffer destroyed) created by
- […]
- 7:25 AM Ticket #2575 (incorrect error message from "open" command) closed by
- fixed: I think this is all working now.
- 7:23 AM Ticket #2647 (Updated ChimeraX but not ISOLDE) closed by
- fixed
- 7:23 AM Ticket #2646 (Problem starting ISOLDE: cannot import name 'Symmetry_Manager' from ...) closed by
- not a bug: A simple version-incompatibility issue. The good news is that going in …
- 7:18 AM Ticket #2445 (Undesirable center of rotation) closed by
- fixed: I'm going to go ahead and tentatively close this as "fixed", since the …
- 7:15 AM Ticket #2407 (Problem saving session involving Clipper) closed by
- fixed: Session save/restore is now all working in my builds, and will be …
- 7:12 AM Ticket #2205 (ChimeraX closed when loading ISOLDE demo file) closed by
- wontfix: Cleaning up old tickets. The problem of ISOLDE/Clipper not working …
- 7:09 AM Ticket #2104 (Clipper: 'NXmapHandler' object has no attribute 'set_display_style') closed by
- fixed: Just cleaning up old tickets... this problem does not occur in any …
- 7:07 AM Ticket #1779 (ISOLDE picking: unsupported operand type(s) for -: 'NoneType' and ...) closed by
- fixed: Long since fixed (sorry for not closing at the time). ISOLDE's tugging …
- 7:05 AM Ticket #2546 (Wrong OpenCL driver used on machine with Nvidia and Intel GPUs) closed by
- not a bug: Turns out the information I read about OpenMM not making any effort to …
- 6:59 AM Ticket #1531 (session.models.assign_id() failure) closed by
- fixed: Just doing some Xmas tidying up... this has all been working fine for …
- 6:57 AM Ticket #2589 (Basic Clipper session restore) closed by
- fixed: Save/restore seems to be quite stable for both Clipper and ISOLDE now, …
Dec 19, 2019:
- 8:41 PM Ticket #2695 (Toolshed text needs updating) closed by
- fixed: Fixed in 3660a5368.
- 3:58 PM Ticket #1997 (Radio-button right-mouse icons) closed by
- fixed: The toolbar button that corresponds to the current right mouse mode is …
- 3:51 PM Ticket #2667 (ToolShed security certificate expired) closed by
- fixed: New certificate was issued after cxtoolshed website was "fixed".
- 3:48 PM Ticket #2586 (fmt.category is a set) closed by
- can't reproduce: Presumably has been fixed already.
- 2:31 PM Ticket #2697 (Graphics problem drawing silhouettes) closed by
- can't reproduce: Appears user was moving and rotating selected model with mouse. They …
- 2:05 PM Ticket #2697 (Graphics problem drawing silhouettes) created by
- […]
- 11:20 AM Ticket #2692 (One-shot triggersets: 'set' object has no attribute 'append') closed by
- fixed: I have committed a fix. As the only current user of default-one-shot …
- 10:12 AM Ticket #2691 (Error with nucleotide/ring graphics after session restore) closed by
- duplicate: Hi Nicholas, This problem was fixed about two months after you …
- 10:11 AM Ticket #2690 (Graphics error (possibly drawing selection)) closed by
- can't reproduce: Probable VMWare Mesa graphics bug. Also using a very old ChimeraX.
- 8:15 AM Ticket #2696 (Direct selection of swapaa residue type) created by
- […]
- 6:47 AM Ticket #2695 (Toolshed text needs updating) created by
- […]
- 5:55 AM Ticket #2694 (Autoscale ToolShed downloads graph widget) created by
- This is very minor, but is there a configuration flag in the …
Dec 18, 2019:
- 4:03 PM ChangeLog edited by
- (diff)
- 12:32 PM Ticket #2693 (Problem importing surface module due to missing libstdc++.so.6) created by
- […]
- 6:20 AM Ticket #2692 (One-shot triggersets: 'set' object has no attribute 'append') created by
- […]
Dec 17, 2019:
- 11:59 PM Ticket #2691 (Error with nucleotide/ring graphics after session restore) created by
- […]
- 1:12 PM Ticket #2690 (Graphics error (possibly drawing selection)) created by
- […]
- 10:55 AM Ticket #2689 (Add bundle_info.xml tag for documentation file locations) created by
- Instead of enforcing a particular directory structure for …
Dec 16, 2019:
- 5:41 PM ChangeLog edited by
- (diff)
- 3:28 PM Ticket #2508 (atomic structure session save: 'utf-8' codec can't decode byte: ...) closed by
- fixed: Changed cchar_to_pystring() [used when forming session-save data] to …
- 11:25 AM Ticket #2688 (Infinite recursion of map.session.existing_directory) closed by
- fixed: Fixed. Opening a session that contains a path to a map in a …
- 11:07 AM Ticket #2686 (macOS Catalina--cannot open either CHimera) closed by
- duplicate: Hi Thomas, Yes, if you right-click (or control-click) on the …
- 10:54 AM Ticket #2687 (Allow REST server to be shut down remotely) closed by
- fixed: Fixed in 3c9d3446e. Instead of adding another special …
- 4:22 AM Ticket #2688 (Infinite recursion of map.session.existing_directory) created by
- […] model_for_powerstroke.cxs
- 3:50 AM Ticket #2687 (Allow REST server to be shut down remotely) created by
- I'd like to suggest the following patch to …
Dec 14, 2019:
Dec 13, 2019:
- 2:08 PM Ticket #2673 (Provide install of bundles from .whl files when Toolshed web site is down) closed by
- not a bug
- 10:48 AM Ticket #2685 (Session restore: 'Ring' object has no attribute '_c_pointer_ref') closed by
- fixed: Fixed on 10/24
- 10:46 AM Ticket #2684 (VR UI scene position is None) closed by
- duplicate: Duplicate of #2677
- 5:13 AM Ticket #2685 (Session restore: 'Ring' object has no attribute '_c_pointer_ref') created by
- […]
- 3:19 AM Ticket #2684 (VR UI scene position is None) created by
- […]
- 1:43 AM Ticket #2683 (Tool Shed stats corrupted?) created by
- Looks like something weird has happened during the time the Tool Shed …
Dec 12, 2019:
- 7:26 PM Ticket #2682 (Tape measure mouse mode error on map orthoplanes) closed by
- fixed: Fixed Tape measure did not consider orthoplanes (or boxfaces) as …
- 7:07 PM Ticket #2682 (Tape measure mouse mode error on map orthoplanes) created by
- […]
- 6:53 PM Ticket #2677 (VR UI scene position is None) closed by
- fixed: Fixed. User pressed button on a VR gui panel, then while holding that …
- 6:17 PM Ticket #2678 (Probable redraw(?) hang) closed by
- can't reproduce: User typed ctrl-C apparently to the startup shell on Linux. No …
- 6:04 PM Ticket #2680 (Pressing two mouse buttons while dragging does not call mouse_up on ...) closed by
- fixed: I fixed the problem where clicking two mouse buttons causes the mode …
- 5:04 PM Ticket #2681 (Pick nearest atom in VR) created by
- From: Tristan Croll Subject: A suggestion for VR interaction Date: …
- 4:55 PM Ticket #2679 (Rotamers wrong for moved structures) closed by
- fixed: Okay, fixed now. Will be in tonight's build. --Eric
- 12:01 PM ChangeLog edited by
- (diff)
- 11:51 AM ChangeLog edited by
- (diff)
- 11:44 AM ChangeLog edited by
- (diff)
- 8:59 AM Ticket #2680 (Pressing two mouse buttons while dragging does not call mouse_up on ...) created by
- Related to this comment regarding VR tugging from Josef Lewandowski: …
- 8:53 AM Ticket #2679 (Rotamers wrong for moved structures) created by
- […] rotamer.png
- 8:47 AM ChangeLog edited by
- (diff)
- 8:11 AM Ticket #2678 (Probable redraw(?) hang) created by
- […]
- 4:29 AM Ticket #2677 (VR UI scene position is None) created by
- […]
Dec 11, 2019:
- 6:02 PM Ticket #2655 (Problem loading file-history cache at startup) closed by
- fixed: Fixed. I put in code to detect if the file history is corrupted. In …
- 4:30 PM Ticket #2676 (LabelModel not saved in sessions and/or LabelModel selectable) closed by
- fixed: Fixed. Made 2d label models save directly in sessions instead of …
- 2:01 PM Ticket #2676 (LabelModel not saved in sessions and/or LabelModel selectable) created by
- […]
- 1:41 PM Ticket #2664 (Session save fails for numpy array of strings) closed by
- wontfix: Changed traceback to say "Serializing numpy arrays of objects is not …
- 11:37 AM Ticket #2675 (KeyError in map chooser) closed by
- duplicate: Hi Shahid, Thanks for reporting this problem. It was fixed about a …
- 10:55 AM Ticket #2674 (Chromium thread crashed) closed by
- can't reproduce
Dec 10, 2019:
- 8:27 PM Ticket #2675 (KeyError in map chooser) created by
- […] Error-log.html Error-log-1.html
- 2:48 PM Ticket #2674 (Chromium thread crashed) created by
- […]
- 2:15 PM Ticket #2671 (Session save: Unable to restore objects of IHMModel class) closed by
- fixed: Made saving IHM in session warn with a popup dialog that IHM does not …
- 12:06 PM Ticket #2673 (Provide install of bundles from .whl files when Toolshed web site is down) created by
- It would be very useful if bundle .whl files could be installed in a …
- 7:02 AM Ticket #2672 (Toolshed down) created by
- […]
- 6:41 AM Ticket #2671 (Session save: Unable to restore objects of IHMModel class) created by
- […]
Dec 9, 2019:
- 6:16 PM Ticket #1029 (nucleotides undo) closed by
- fixed: Simplified code to set shown_when_atoms_hidden to false for …
- 2:04 PM Ticket #2528 (Renumbering residues) closed by
- fixed: Despite saying that I was closing this ticket 3 weeks ago, it didn't …
- 2:00 PM Ticket #2074 (Next steps: building into density) closed by
- fixed: Seemingly all the requirements of this ticket are now satisfied.
- 1:57 PM Ticket #1707 (Set atom types for residue based on dictionary) closed by
- fixed: Not fixed as per my suggestion (setting atom types based on …
- 1:49 PM Ticket #1083 (Add missing sidechains) closed by
- fixed: You can certainly now "swapaa" to the same residue type.
- 12:39 PM Ticket #2670 (VR error because scene_scale = 0) closed by
- fixed: Put in code to avoid divide by zero if scene scale becomes 0.
- 11:47 AM Ticket #2669 (Problem with hacked code: bond rotater is None) closed by
- fixed: Fixed. The error happened when the VR button is pressed and the cone …
- 11:39 AM Ticket #2670 (VR error because scene_scale = 0) created by
- […]
- 10:55 AM Ticket #2669 (Problem with hacked code: bond rotater is None) created by
- […]
- 3:38 AM Ticket #2668 (RFE: open compressed maps directly) created by
- […]
Dec 8, 2019:
- 2:53 AM Ticket #2667 (ToolShed security certificate expired) created by
- Yesterday, apparently.
Dec 6, 2019:
- 3:14 PM Ticket #2666 (Allow bond rotation mouse mode to move large size) created by
- From: "Lewandowski, Jozef" Subject: [chimerax-users] Rotate bond move …
- 11:35 AM Ticket #2665 (Read Amira segmentation files) created by
- Paul Korir has made a Python library ahds on PyPi to read Amira …
- 1:49 AM Ticket #2664 (Session save fails for numpy array of strings) created by
- […]
Dec 5, 2019:
- 7:07 PM Ticket #2663 (Crash opening IHM pdbdev 12, nuclear pore) closed by
- nonchimerax
- 7:07 PM Ticket #2663 (Crash opening IHM pdbdev 12, nuclear pore) reopened by
- 7:06 PM Ticket #2661 (Crash opening PDBDEV 12) closed by
- nonchimerax: Apple OpenGL graphics driver bug macOS Mojave, AMD Radeon Pro 575X …
- 7:05 PM Ticket #2663 (Crash opening IHM pdbdev 12, nuclear pore) closed by
- duplicate: Apple graphics driver bug. Same as #2663, but this one on macOS …
- 7:03 PM Ticket #2663 (Crash opening IHM pdbdev 12, nuclear pore) created by
- […]
- 6:56 PM Ticket #2660 (Problems with PDBDEV 12: cannot save IHMModel in session; shader does ...) closed by
- fixed: Fixed opengl bug 3.
- 6:27 PM Ticket #2662 (IHM models can't be saved in sessions.) created by
- Saving an IHM model in a session gives an error. Many IHM subclasses …
- 5:34 PM Ticket #2648 (Atom.structure_category throwing exception is awkward) closed by
- fixed: Non-atomic atoms are now in category "other".
- 4:46 PM Ticket #2661 (Crash opening PDBDEV 12) created by
- […]
- 1:14 PM Ticket #2660 (Problems with PDBDEV 12: cannot save IHMModel in session; shader does ...) created by
- […]
- 11:22 AM Ticket #2659 (Problem restoring a header sequence) closed by
- duplicate
- 10:41 AM Ticket #2657 (Basic Actions: 'None' in restored model list) closed by
- duplicate
- 7:48 AM Ticket #2659 (Problem restoring a header sequence) created by
- […]
- 2:47 AM Ticket #2658 (Ribbon 'guides' is None after session restore) created by
- […]
- 1:55 AM Ticket #2657 (Basic Actions: 'None' in restored model list) created by
- […]
- 1:51 AM Ticket #2656 (Calling session_save_pointers() on a Collection crashes ChimeraX) created by
- Trying to come to terms with how session save/restore works for …
- 12:33 AM Ticket #2650 (ISOLDE/OpenMM: Invoked getPositions() on a State which does not ...) closed by
- fixed: This is an old bug from 1.0b3 that has been fixed in the development …
Dec 4, 2019:
- 5:32 PM Ticket #2651 (ISOLDE/OpenMM: Invoked getPositions() on a State which does not ...) closed by
- duplicate: duplicate of #2650
- 4:38 PM Ticket #2655 (Problem loading file-history cache at startup) created by
- […] ChimeraX_brokenpref.zip
- 4:30 PM Ticket #2654 (Add subcommand documentation from bundles to doc index) created by
- Currently command documentation in toolshed bundles is merged into the …
- 4:23 PM Ticket #2653 (Provide documentation from toolshed bundles online) created by
- If I add a bundle to the toolshed that includes documentation for a …
- 3:48 PM Ticket #2652 (ISOLDE: using deleted 'session' attribute of dead Structure) created by
- […]
- 3:43 PM Ticket #2651 (ISOLDE/OpenMM: Invoked getPositions() on a State which does not ...) created by
- […]
- 3:22 PM Ticket #2650 (ISOLDE/OpenMM: Invoked getPositions() on a State which does not ...) created by
- […]
- 3:13 PM Ticket #2649 (Toolshed details does not display http link markup correctly.) created by
- In the details section of a bundle on the Toolshed web page having two …
- 2:48 PM Ticket #2645 (Make locating missing volume files when opening session easier) closed by
- fixed: Fixed. When you locate a missing image files when opening a session …
- 2:08 PM Ticket #2644 (Memory error computing surface for marker set) closed by
- not a bug: Tried to surface markers with huge bounds. User does not realize a …
- 2:07 PM Ticket #2648 (Atom.structure_category throwing exception is awkward) created by
- […] test.cmm
- 1:55 PM Ticket #2647 (Updated ChimeraX but not ISOLDE) created by
- […]
- 1:26 PM Ticket #2646 (Problem starting ISOLDE: cannot import name 'Symmetry_Manager' from ...) created by
- […]
- 1:14 PM Ticket #2641 (Rotamers assigns bfactor zero when >1 rotamer incorporated) closed by
- fixed
- 12:53 PM Ticket #2645 (Make locating missing volume files when opening session easier) created by
- […]
- 7:14 AM Ticket #2644 (Memory error computing surface for marker set) created by
- […]
Dec 3, 2019:
- 5:58 PM ChangeLog edited by
- (diff)
- 5:23 PM Ticket #2643 (RFE: report phi, psi when "swapaa interactive" is used) closed by
-
fixed:
swapaa interactivenow takes the samelogoption asswapaadoes, … - 4:27 PM Ticket #2643 (RFE: report phi, psi when "swapaa interactive" is used) created by
- Experiments suggest that only "swapaa" (not "swapaa interactive") …
- 3:23 PM Ticket #2642 (Session restore error) created by
- […] SspB2019.cxs
- 12:30 PM Ticket #2641 (Rotamers assigns bfactor zero when >1 rotamer incorporated) created by
- I was going through the tutorial and noticed my bfactor coloring was …
- 12:15 PM Ticket #2633 (Problem updating pseudobond labels) closed by
- fixed: Fixed. Made label code look for deleted labels when rebuilding graphics.
- 11:43 AM Ticket #2635 (self._positions is None) closed by
- not a bug: I don't see anything to do here.
- 11:41 AM Ticket #2637 (Surface capping: Array argument has non-numeric values) closed by
- duplicate: Fixed 4 months ago. There was only 1 day's daily build that had this …
- 11:24 AM Ticket #2636 (Cannot comment on long tickets via wiki) closed by
- wontfix: Basically a limitation of Trac. In such cases, you need to pare down …
- 11:23 AM Ticket #2640 (Preference GUI not refreshed) created by
- […]
- 11:14 AM Ticket #2639 (Make a 2-person VR how-to tutorial video) created by
- Make an augmented reality video showing how to start a two person VR …
- 11:03 AM Ticket #2638 (Make session save prune unsavable objects) created by
- […]
- 9:44 AM Ticket #2637 (Surface capping: Array argument has non-numeric values) created by
- […]
- 3:47 AM Ticket #2636 (Cannot comment on long tickets via wiki) created by
- A bug report on the bug reporter... how meta. :) Trying to follow up …
- 3:24 AM Ticket #2635 (self._positions is None) created by
- […]
- 12:22 AM Ticket #2634 (Crash clicking help-browser link) created by
- […]
Note:
See TracTimeline
for information about the timeline view.
