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Timeline
Jul 13, 2016:
- 2:27 PM Ticket #69 (Atom spec parsing does not preserve model or chain order) reopened by
- Only the case of a spec like #1 #2 #3 was fixed 4 months ago giving …
Jul 12, 2016:
- 7:31 PM Ticket #367 (Error after deleting all atoms) created by
- Deleting all atoms causes the C++ code to delete the AtomicStructure, …
- 3:42 PM Ticket #366 (incomplete logging from multi-command cxcmd links) created by
- I guess this linking technology will change, but when it does, make …
- 12:49 PM Ticket #333 (SSE cartoon extensions toward Nterm (no preceding linker) disjoint) closed by
- fixed: #361 has been fixed.
- 12:48 PM Ticket #361 (hiding cartoon/ribbon for any N-terminal part of an SSE causes a problem) closed by
- fixed: Fixed in d91c2c5/chimerax. Twist in ribbon are ignored at …
- 10:28 AM Ticket #365 (cartoon linker error) closed by
- fixed: Fixed in 07fd9cb/ChimeraX. _RIBBON_CHANGE constant is …
Jul 11, 2016:
- 3:39 PM Ticket #364 (map_series_gui tool not initialized) closed by
- worksforme: Unable to reproduce the bug. The initialize function is being called. …
- 2:57 PM Ticket #266 (CA-only structure not using pseudobonds) closed by
- fixed
- 11:40 AM Ticket #365 (cartoon linker error) created by
- open 2gbp carlink long s,h gives traceback: cartoon linker long …
Jul 8, 2016:
- 2:23 PM Ticket #363 ("view atomspec" doesn't work if only ribbons/cartoons shown) closed by
- fixed: Fixed. view command was not considering ribbons with all atoms …
- 1:26 PM Ticket #364 (map_series_gui tool not initialized) created by
- The map series gui tool was not being initialized. The initialize() …
- 11:14 AM Ticket #363 ("view atomspec" doesn't work if only ribbons/cartoons shown) created by
- I can't focus in on specific residues with the view command when only …
- 10:34 AM Ticket #362 (Report average, min, max electrostatic potential on surface) created by
- Begin forwarded message: From: "Marek Maly" Subject: Re: …
Jul 7, 2016:
- 3:00 PM DeveloperMeetings edited by
- (diff)
- 2:41 PM 2016-07-07 created by
- 2:41 PM FAI edited by
- (diff)
- 2:28 PM FAI edited by
- (diff)
- 12:34 PM Ticket #361 (hiding cartoon/ribbon for any N-terminal part of an SSE causes a problem) created by
- This may be the same problem as #333, I'm not sure. If you hide a …
- 11:12 AM Ticket #360 (cartoon tether with atomspec gives error) created by
- I can use "cartoon tether" without error if I don't specify any atoms …
Jul 6, 2016:
- 3:02 PM Ticket #359 (giving color-cmd target as a single keyword instead of with target ...) closed by
- fixed: Fixed.
- 11:48 AM Ticket #359 (giving color-cmd target as a single keyword instead of with target ...) created by
- In the current daily build, using commands like "color pink cartoon" …
Jul 5, 2016:
- 4:43 PM Ticket #358 (cannot open session just saved in same version) closed by
- fixed: Change from using gzip.GzipFile to gzip.open so that 'encoding' …
- 10:59 AM Ticket #358 (cannot open session just saved in same version) created by
- I first created the session with these commands and then some manual …
- 9:48 AM Ticket #253 (ribbon 3j3f gives error) closed by
- fixed: apparently fixed, neither 3j3f or "ribbon nucleic" on 4v6x generate …
Jun 30, 2016:
- 7:33 PM Ticket #357 (divide-by-zero error when changing 5fj9 to stick) closed by
- fixed: Fixed. Code did not properly display cylinder bonds aligned exactly …
- 4:34 PM Ticket #229 (Ribbon error opening a PDB: "different number of coordinates and guides") closed by
- fixed: I have attached the file that caused the error 6 months ago. Tried it …
- 3:14 PM Ticket #264 (Atoms permanently hidden by ribbon) closed by
- fixed: Apparently fixed. Deleting all atoms except CA atoms automatically …
- 3:11 PM Ticket #357 (divide-by-zero error when changing 5fj9 to stick) created by
- open 5fj9 style stick gives warning in Log: …
- 3:06 PM Ticket #169 (deleting chain doesn't delete its cartoon) closed by
- fixed: Apparently fixed.
- 2:50 PM Ticket #137 (Hiding ribbon leaves backbone atoms undisplayed) closed by
- fixed: Apparently fixed.
- 2:43 PM Ticket #262 (Open 1m4x displays nothing, ribbon vertices are NaN) closed by
- fixed: Apparently fixed by the various methodological changes since then. Elaine
- 2:18 PM Ticket #317 ("cartoon" doesn't recognize nucleic acids) closed by
- fixed: Fixed in [develop 491cf14]. An if/elif/else was written as if/if/else.
- 1:35 PM Ticket #330 (Display helices as curved tubes) closed by
- duplicate: duplicate of #283, I will copy the comment to that one
Jun 27, 2016:
- 5:24 PM Ticket #356 (vop boxes causing later failure?) closed by
- fixed: Fixed. Grid size of a box around an atom came out floating point …
- 3:40 PM Ticket #356 (vop boxes causing later failure?) created by
- I'm not sure exactly how this problem is triggered. One time I got it …
Jun 23, 2016:
- 4:08 PM Ticket #355 ("usage volume" broken) closed by
- fixed: Fixed. The fact that the volume command allows repeating level and …
- 4:01 PM Ticket #355 ("usage volume" broken) created by
- It may be specific to volume since I didn't have this problem with …
- 3:46 PM Ticket #354 (fitmap search error) closed by
- fixed: Fixed. I had not tested fit search using a map with symmetry …
- 3:39 PM Ticket #353 (fitmap symmetric error) closed by
- fixed: Fixed. Problem was Chimera map file reader did not read symmetries …
- 1:08 PM Ticket #354 (fitmap search error) created by
- Maybe this map file is bad somehow. I assigned symmetry and wrote it …
- 12:57 PM Ticket #353 (fitmap symmetric error) created by
- If I open the attached map (D2 symmetry) and then use commands vol #1 …
Jun 22, 2016:
- 2:39 PM Ticket #352 (can't use "sel" surface in symmetry center spec) closed by
- fixed: Fixed.
- 2:28 PM Ticket #108 (develop submittable patch for floating pane behavior) closed by
- wontfix: Moot since we're moving to Qt
- 2:28 PM Ticket #138 (Command-line does not receive ctrl-A, ctrl-E ... when graphics pane ...) closed by
- wontfix: Moving to Qt, and this works in Qt.
- 2:05 PM Ticket #352 (can't use "sel" surface in symmetry center spec) created by
- This is an obscure situation, so low priority. If I select a surface …
- 12:39 PM Ticket #350 (command save-session traceback (but menu works)) closed by
- fixed: Fixed. The code that makes the session file Mac icon show a thumbnail …
- 11:37 AM Ticket #351 (Turning on soft/full lighting hides a surface within a transparent surface) created by
- Tested in three situations: with an isosurface inside of transparent …
- 10:40 AM Ticket #350 (command save-session traceback (but menu works)) created by
- I could save the attached session with the menu, but trying to save it …
Jun 21, 2016:
- 7:47 PM Ticket #349 (Specify spacegroup symmetry in vop cover command) created by
- Currently the vop cover command can only get symmetries from the map. …
Jun 20, 2016:
- 12:28 PM Ticket #348 (opening 1a0s gives traceback and no cartoons shown) created by
- The problem appears to be in generating cartoons (ribbons). open 1a0s …
Jun 16, 2016:
- 5:31 PM Ticket #345 (molmap "balls" option error) closed by
- fixed: Fixed. The "balls" option means each atom adds a function that is not …
- 4:22 PM Ticket #347 (Command to search documentation) created by
- Begin forwarded message: From: Oliver Clarke Subject: Re: clipping? …
- 4:19 PM Ticket #346 (Tab completion of command syntax) created by
- Begin forwarded message: From: Oliver Clarke Subject: Re: clipping? …
- 3:16 PM FAI edited by
- (diff)
- 3:10 PM FAI edited by
- (diff)
- 3:09 PM DeveloperMeetings edited by
- (diff)
- 3:04 PM 2016-06-16 edited by
- (diff)
- 3:03 PM 2016-06-16 created by
- 2:01 PM DeveloperMeetings edited by
- (diff)
- 11:34 AM Ticket #345 (molmap "balls" option error) created by
- (using structure 2gbp but I don't think it matters) molmap strand 4 …
- 10:52 AM Ticket #344 (Rework clip command options) created by
- It is impossible to remember which option, near/far or front/back, …
Jun 15, 2016:
- 11:19 AM Ticket #343 (MIDI for interfacing to input devices) created by
- Begin forwarded message: From: "Dougherty, Matthew T" Subject: …
Jun 13, 2016:
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