Opened 10 years ago

Closed 9 years ago

#229 closed defect (fixed)

Ribbon error opening a PDB: "different number of coordinates and guides"

Reported by: Tom Goddard Owned by: Conrad Huang
Priority: major Milestone:
Component: Graphics Version:
Keywords: Cc: meng@…
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

Get an error trying to open the attached PDB file, obtained from Chris Guilbert as part of an MD trajectory.

open movie1.pdb

Error processing trigger "graphics update"
Traceback (most recent call last):
File "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimerax/core/triggerset.py", line 114, in invoke
return self._func(self._name, data)
File "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimerax/core/atomic/structure.py", line 223, in _update_graphics_if_needed
self._create_ribbon_graphics()
File "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimerax/core/atomic/structure.py", line 377, in _create_ribbon_graphics
ribbon = Ribbon(coords, guides)
File "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimerax/core/atomic/ribbon.py", line 12, in init
raise ValueError("different number of coordinates and guides")
ValueError: different number of coordinates and guides

Attachments (1)

movie1.pdb (545.0 KB ) - added by Tom Goddard 9 years ago.

Download all attachments as: .zip

Change History (3)

comment:1 by Elaine Meng, 9 years ago

ticket refers to attachment, but no files are attached

by Tom Goddard, 9 years ago

Attachment: movie1.pdb added

comment:2 by Tom Goddard, 9 years ago

Cc: meng@… added
Resolution: fixed
Status: newclosed

I have attached the file that caused the error 6 months ago. Tried it in current ChimeraX and it gave no error.

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