Opened 9 years ago

Closed 9 years ago

#361 closed defect (fixed)

hiding cartoon/ribbon for any N-terminal part of an SSE causes a problem

Reported by: Elaine Meng Owned by: Conrad Huang
Priority: major Milestone:
Component: Depiction Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

This may be the same problem as #333, I'm not sure.

If you hide a ribbon segment such that it creates a new N-terminal end within any strand or helix, that new N-terminal end has a disjointed section. (This problem does not occur if you hide a ribbon segment such that it creates a new C-terminal end for an SSE.) For example,

open 3fx2
hide
rainbow
hide ~ strand cartoons
hide :2-5 cartoons (now there's an ugly square at :6)
hide :31-35 cartoons (similar problem)
cartoon
hide ~ helix cartoons
hide :13-21 cartoons (ick)
hide :145-148 cartoons (C-term truncation, looks fine)

Change History (2)

comment:1 by Elaine Meng, 9 years ago

Guess I don't understand why a new N-term is a problem when the N-term residue of the whole structure (3fx2) is in a strand and it looks fine.

comment:2 by Conrad Huang, 9 years ago

Resolution: fixed
Status: newclosed

Fixed in d91c2c5/chimerax.

Twist in ribbon are ignored at residue junction between secondary structure types (e.g., coil -> strand). Code was incorrectly ignoring twist even when two residues are of the same SS type when the first one is undisplayed.

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