Timeline



Dec 19, 2015:

10:26 AM Ticket #223 (ChimeraX quick start links don't work) closed by Greg Couch
wontfix: Those links only work within ChimeraX, not in a general web browser. …
6:52 AM Ticket #223 (ChimeraX quick start links don't work) created by Elaine Meng
At least on my Mac, ChimeraX quick start links don't work. Even if I …

Dec 18, 2015:

2:32 PM Ticket #222 (Plasma hydrogen bond display) created by Tom Goddard
How about an animated plasma display mode for hydrogen bonds? See …
11:27 AM Ticket #221 (Proline N atom floats away from ribbon) created by Tom Goddard
Proline residue atoms shown with ribbon looks weird -- the N does not …

Dec 17, 2015:

2:33 PM 2015-12-17 created by Conrad Huang
12:37 PM 2015-12-10 edited by Tom Goddard
(diff)
12:35 PM 2015-12-10 edited by Tom Goddard
(diff)

Dec 16, 2015:

3:19 PM Ticket #205 (Error dialogs go off bottom of screen) closed by pett
fixed: As per Tom's suggestion, the error dialog now prunes even more …
12:39 PM Ticket #220 (every time I restore session (STL-only) it adds another Model Panel) created by Elaine Meng
Every time I restore the attached session (closing in between), …
12:35 PM Ticket #219 (cannot save session (even STL only)) closed by Greg Couch
fixed: Fixed.
11:21 AM Ticket #219 (cannot save session (even STL only)) created by Elaine Meng
I opened an stl file (attached) and then tried to a save a session …

Dec 15, 2015:

3:32 PM Ticket #215 (multi-word selector parsing) closed by Conrad Huang
fixed: Previous requirement for selector names is that they be legal Python …
12:29 PM Ticket #218 (traceback trying to save volume file) closed by Tom Goddard
fixed: Fixed. Writing mrc format was broken because it couldn't find the …
10:10 AM Ticket #218 (traceback trying to save volume file) created by Elaine Meng
I made a molmap then tried to save it with: vol #2 save …

Dec 14, 2015:

10:07 PM Ticket #199 (closing STL opened from session file gives traceback) closed by Greg Couch
fixed: Model wasn't getting session attribute restored. Reworked code to …
5:06 PM Ticket #192 (command file should tolerate blank lines) closed by Greg Couch
fixed: Allow for empty commands before, between, or after semicolons.
2:54 PM Ticket #194 (Can't select all text in log with Cmd-A) closed by pett
duplicate
1:13 PM Ticket #217 (errors with "color delete all") closed by Greg Couch
fixed: Fixed. Forgot to return after deleting all colors.
10:09 AM Ticket #201 (Subcommand abbreviation broken) closed by Greg Couch
fixed: Bug was byproduct of fix for #191.
9:49 AM Ticket #217 (errors with "color delete all") created by Elaine Meng
I suspect this is the same bug as mentioned in #209 with "color list" …
8:58 AM Ticket #216 (coloring is broken today) closed by Greg Couch
fixed: .colordef should have been changed to .colorname.
8:43 AM Ticket #216 (coloring is broken today) created by Elaine Meng
in the Graphics icons, the ones that change background color are …

Dec 13, 2015:

6:23 PM Ticket #208 (help link for subcommands (in Log) is broken) closed by Greg Couch
fixed: The link in the log window was correct (confirmed by saving the log), …
6:21 PM Ticket #209 ("color" logging suggestions and bugettes) closed by Greg Couch
fixed: Did 'color list all', call the regulars user-defined colors custom …

Dec 11, 2015:

4:56 PM Ticket #215 (multi-word selector parsing) created by pett
I thought there would be no problem with multi-word selectors due to …

Dec 10, 2015:

5:36 PM Ticket #21 (Undo Manager Master Ticket) closed by pett
wontfix
5:33 PM Ticket #36 (Table Viewer Master Ticket) closed by pett
wontfix
5:31 PM Ticket #28 (Table Data Master Ticket) closed by pett
wontfix
5:24 PM Ticket #147 (Ribbon: list index out of range) closed by pett
fixed
5:21 PM Ticket #32 (Molecular Viewer Master Ticket) closed by pett
fixed
5:11 PM Ticket #214 (Save image dialog bitrot) created by pett
The per-format section of the image-save dialog no longer populates.
4:40 PM Ticket #29 (Molecular Data Master Ticket) closed by pett
fixed
4:36 PM Ticket #31 (Event API Master Ticket) closed by pett
fixed
4:03 PM 2015-12-10 edited by pett
(diff)
3:35 PM 2015-12-10 edited by pett
(diff)
3:29 PM Needed Command Functionality edited by pett
(diff)
2:56 PM Needed Command Functionality edited by pett
(diff)
2:50 PM EarlyReleaseRequirements edited by pett
(diff)
2:45 PM EarlyReleaseRequirements edited by pett
(diff)
2:30 PM 2015-12-10 edited by pett
(diff)
2:26 PM 2015-12-10 edited by pett
(diff)
2:18 PM 2015-12-10 edited by pett
(diff)
2:15 PM 2015-12-10 edited by pett
(diff)
2:14 PM 2015-12-10 edited by pett
(diff)
2:13 PM 2015-12-10 edited by pett
(diff)
2:09 PM 2015-12-10 created by pett
2:08 PM DeveloperMeetings edited by pett
(diff)
12:01 PM Ticket #212 (NMR ensembles not opened into submodels) closed by Tom Goddard
fixed: Fixed. Open command fetching was not doing the model grouping. The …
11:51 AM Ticket #213 (mmCIF NMR ensembles don't propagate secondary structure) created by pett
mmCIF NMR ensembles only have the correct secondary structure …
11:16 AM Ticket #212 (NMR ensembles not opened into submodels) created by pett
They open into one model per. I believe they are supposed to open …
11:16 AM Ticket #211 (Problem opening 4v41 (template fetching)) closed by Tom Goddard
fixed: Fixed. Change to core/mmcif.py pushed. I moved the the …
11:09 AM Ticket #211 (Problem opening 4v41 (template fetching)) created by pett
Traceback (most recent call last): File …

Dec 7, 2015:

5:15 PM Ticket #210 (error setting fill-light intensity (looks like a typo)) closed by Tom Goddard
fixed: Fixed. Typo. I'm sure I tested this before -- must have been some …
2:50 PM Ticket #210 (error setting fill-light intensity (looks like a typo)) created by Elaine Meng
command "light fillIntensity .2" gives traceback lighting …

Dec 5, 2015:

7:34 AM Ticket #209 ("color" logging suggestions and bugettes) created by Elaine Meng
Currently “color list" only lists the user-defined colors, not the …
7:28 AM Ticket #208 (help link for subcommands (in Log) is broken) created by Elaine Meng
In the Log, every help link for subcommands has “%23” and fails to …

Dec 4, 2015:

7:14 PM Ticket #207 (ssl certificate verification error in cellPACK fetch) closed by Greg Couch
fixed: For linux, added code to configure bundled OpenSLL to use the system's …
3:21 PM Ticket #206 (daily build fails to start up on Mac) closed by Greg Couch
fixed: Removed import from commands.py.
12:19 PM Ticket #207 (ssl certificate verification error in cellPACK fetch) created by Tom Goddard
ChimeraX python has a problem verifying https certificates. This is …
8:16 AM Ticket #206 (daily build fails to start up on Mac) created by pett
Traceback (most recent call last): File "main.py", line 3, in …

Dec 3, 2015:

5:46 PM Ticket #186 (Can't save jpeg images) closed by Greg Couch
fixed: works in current daily build.
2:56 PM 2015-12-03 edited by Conrad Huang
(diff)
2:48 PM 2015-12-03 edited by Conrad Huang
(diff)
2:45 PM 2015-12-03 edited by Conrad Huang
(diff)
2:28 PM 2015-12-03 created by Conrad Huang
2:05 PM DeveloperMeetings edited by Conrad Huang
(diff)
9:56 AM Ticket #205 (Error dialogs go off bottom of screen) created by Tom Goddard
Error dialogs go off bottom of screen on small screens and the Ok …
9:49 AM Ticket #204 (error after showing volume outline box) closed by Tom Goddard
fixed: Fixed. Bug caused by me adding code that checks to make sure that …
8:49 AM Ticket #204 (error after showing volume outline box) created by Elaine Meng
The first time I tried to show a box I got a long traceback that went …

Dec 2, 2015:

7:50 PM EarlyReleaseRequirements edited by Tom Goddard
(diff)

Dec 1, 2015:

5:03 PM Ticket #203 ("camera 360s" gives traceback, halts redraw) closed by Tom Goddard
fixed: Fixed. This was broken a few weeks ago by a code change to avoid …
5:02 PM Ticket #202 ("camera 360" adds drawings without erasing previous drawings) closed by Tom Goddard
fixed: Fixed. This was broken a week ago by the change that to allow …
3:18 PM Ticket #203 ("camera 360s" gives traceback, halts redraw) created by Elaine Meng
Doesn't seem to matter what is open. I'm using mac OS 10.10.5 with …
3:15 PM Ticket #202 ("camera 360" adds drawings without erasing previous drawings) created by Elaine Meng
At least on my desktop Mac, using "camera 360" gets into a state where …
2:57 PM Needed Command Functionality edited by Elaine Meng
(diff)
2:18 PM Ticket #201 (Subcommand abbreviation broken) created by Tom Goddard
Command "position init" gives in the log positioninitialt Expected a …
12:09 PM Needed Command Functionality edited by Elaine Meng
(diff)

Nov 30, 2015:

3:22 PM 2015-11-30 edited by Conrad Huang
(diff)
3:12 PM DeveloperMeetings edited by Conrad Huang
(diff)
3:11 PM 2015-11-30 created by Conrad Huang
10:27 AM EarlyReleaseRequirements edited by Tom Goddard
(diff)
10:24 AM EarlyReleaseRequirements edited by Tom Goddard
(diff)

Nov 25, 2015:

11:53 AM Ticket #200 ("save image" should have default format) closed by Tom Goddard
fixed: Fixed. It now saves junk.png.
11:23 AM Ticket #200 ("save image" should have default format) created by Elaine Meng
Command "save image filename" gives traceback. Although this could be …
11:17 AM Ticket #199 (closing STL opened from session file gives traceback) created by Elaine Meng
After restoring the attached session (just one STL model), command …
11:15 AM Ticket #198 (finish session molecular data save/restore) created by Elaine Meng
Until finished, molecular structure save/restore produces a traceback.
10:11 AM Ticket #197 (testing2) created by Conrad Huang
[…]

Nov 24, 2015:

3:35 PM Ticket #196 ("save" usage shows unusable "quality" option) closed by Greg Couch
fixed: Fixed -- quality was left out of save command, but was in 'save image' …
2:23 PM Ticket #173 (command case comparison needs to be more sophisticated) closed by Greg Couch
fixed
2:20 PM Ticket #193 ("save" format keyword gives traceback) closed by Greg Couch
fixed: Modified the EnumOf annotation to take iterators as well as sequences. …
1:58 PM Ticket #196 ("save" usage shows unusable "quality" option) created by Elaine Meng
"usage save" shows a "quality" option. I thought I heard somebody …[…]
1:39 PM Ticket #195 (error trying to save session) closed by pett
fixed
11:27 AM Ticket #195 (error trying to save session) created by Elaine Meng
open 1zik save ~/Desktop/junk.cxs Error processing trigger "end save …
11:00 AM Ticket #194 (Can't select all text in log with Cmd-A) created by Tom Goddard
Would like to be able to select all text in log with Cmd-A on Mac. …
10:08 AM Ticket #193 ("save" format keyword gives traceback) created by Elaine Meng
for example, either the following or the following plus the "image" …

Nov 23, 2015:

5:40 PM Ticket #189 (Mail to ChimeraX-bugs bounced) closed by Greg Couch
fixed: changed chimera2 alias on cgl to be chimerax. changed chimera2 alias …
4:57 PM Ticket #191 ("alias" command has problems) closed by Greg Couch
fixed: (c) was a side-effect of (b). (a) is now fixed too. Bug was with …
3:26 PM Ticket #192 (command file should tolerate blank lines) created by Elaine Meng
It is useful to allow blank lines in command files, for readability …
3:18 PM Ticket #191 ("alias" command has problems) created by Elaine Meng
I don't know if these are all connected or separate problems, so …
3:12 PM Ticket #190 (mousemode no longer accepts function "none") closed by Tom Goddard
fixed: Fixed.
2:58 PM Ticket #190 (mousemode no longer accepts function "none") created by Elaine Meng
Now when I try to set some button as none I get an error message, for …
2:16 PM Ticket #143 (hex color parsing kaput when code starts with number) closed by Greg Couch
fixed: The #0xff0000 example was a bug, it should have been #ff0000. So this …
12:29 PM Ticket #188 (Abbreviated command keyword matches wrong option) closed by Greg Couch
fixed: Fixed. Found the non-ordered dict and replaced it with an OrderedDict.
12:25 PM Ticket #189 (Mail to ChimeraX-bugs bounced) created by Tom Goddard
From: Mail Delivery Subsystem <MAILER-DAEMON@…> …
11:04 AM Ticket #188 (Abbreviated command keyword matches wrong option) created by Tom Goddard
I get that "sel sil true" matches "set silhouetteWidth true" (which …
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