Timeline



Feb 6, 2025:

5:55 PM Ticket #16805 (Selection intersection problem) created by isaphan@…
[…]
3:55 PM Ticket #16799 (Crash in chem_group) closed by Eric Pettersen
can't reproduce: Distilled the above into a .cxc file, which worked on Mac and Windows.
3:36 PM Ticket #16804 (UniProt feature not shown in daily build) closed by Eric Pettersen
fixed: Fix: …
3:25 PM Ticket #16793 (Crash in chem_group) closed by Eric Pettersen
can't reproduce: Condensed the log into a .cxc file, which worked fine on both Mac and …
3:11 PM Ticket #16804 (UniProt feature not shown in daily build) created by Elaine Meng
e.g.: ldlr_human cah1_human
10:49 AM Ticket #16800 (Restore new session in old ChimeraX) closed by Eric Pettersen
limitation: Hi Alejandro, Thanks for reporting this problem. The "Atomic" bundle …
10:42 AM Ticket #16798 (Crash in chem_group while executing script) closed by Eric Pettersen
duplicate
10:41 AM Ticket #16797 (Crash in chem_group while executing script) closed by Eric Pettersen
can't reproduce
10:37 AM Ticket #16795 (Crash in chem_group) closed by Eric Pettersen
can't reproduce
10:33 AM Ticket #16794 (Find Cavities crash) closed by Eric Pettersen
duplicate
10:31 AM Ticket #16803 (Graphics crash, macOS 13.7.1, M2 GPU) created by chimerax-bug-report@…
[…]
9:42 AM Ticket #16802 (Graphics crash, macOS 13.7.1, M2 GPU) created by chimerax-bug-report@…
[…]
9:12 AM Ticket #16801 ('MRCGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…
[…]
7:02 AM Ticket #16800 (Restore new session in old ChimeraX) created by heuck@…
[…]
5:56 AM Ticket #16799 (Crash in chem_group) created by chimerax-bug-report@…
[…]
5:07 AM Ticket #16798 (Crash in chem_group while executing script) created by chimerax-bug-report@…
[…]
5:05 AM Ticket #16797 (Crash in chem_group while executing script) created by chimerax-bug-report@…
[…]
5:04 AM Ticket #16796 (Spin movie button does not work) created by xblanche@…
[…]
4:42 AM Ticket #16795 (Crash in chem_group) created by chimerax-bug-report@…
[…]
2:17 AM Ticket #16794 (Find Cavities crash) created by chimerax-bug-report@…
[…]
12:58 AM Ticket #16793 (Crash in chem_group) created by chimerax-bug-report@…
[…]

Feb 5, 2025:

7:16 PM Ticket #16792 (Read Boltz-1 .npz PAE files) closed by Tom Goddard
fixed: Done. The AlphaFold Error Plot tool now will find .npz PAE files for …
7:09 PM Ticket #16792 (Read Boltz-1 .npz PAE files) created by goddard@…
[…]
6:32 PM Ticket #16791 (Windows Subsystem for Linux crash at startup: malloc corruption) created by jobichenc@…
[…] chimerabug.txt
5:21 PM Dev2025-2-3 edited by Eric Pettersen
(diff)
1:56 PM Ticket #16790 (SEQCROW: various errors reading possible ORCA output) created by chimerax-bug-report@…
[…]
12:20 PM Ticket #16789 (Crash in bug reporter while available bundle info being fetched from ...) created by chimerax-bug-report@…
[…]
11:20 AM Ticket #16786 (Graphics hardware encountered an error and was reset) closed by Tom Goddard
nonchimerax: The ChimeraX Report a Bug dialog that you used gave the following info …
10:04 AM Ticket #16788 (ISOLDE: too many hydrogens for SER) created by chimerax-bug-report@…
[…]
10:04 AM Ticket #16787 (Crash moving window between screens) closed by Eric Pettersen
duplicate
10:00 AM Ticket #16785 (Crash in python_instances_of_class) closed by Eric Pettersen
duplicate
9:59 AM Ticket #16784 (Problem installing Clipper) closed by Eric Pettersen
not a bug: Hi Jobichen, The version of ISOLDE/Clipper you are trying to install …
9:54 AM Ticket #16783 (Session restore: LZ4F_decompress failed) closed by Eric Pettersen
duplicate: Duplicate of #16129 (which is still open)
9:51 AM Ticket #16782 (Crash opening PDB file) closed by Eric Pettersen
can't reproduce
5:05 AM Ticket #16787 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
4:29 AM Ticket #16786 (Graphics hardware encountered an error and was reset) created by laura.lp.iq@…
[…]

Feb 4, 2025:

9:05 PM Ticket #16785 (Crash in python_instances_of_class) created by chimerax-bug-report@…
[…]
8:45 PM Ticket #16784 (Problem installing Clipper) created by Jobichenc@…
[…]
6:36 PM Ticket #16781 (Crash moving window between screens) closed by Tom Goddard
duplicate
6:35 PM DeveloperMeetings edited by Tom Goddard
(diff)
6:34 PM Ticket #16783 (Session restore: LZ4F_decompress failed) created by chimerax-bug-report@…
[…]
6:34 PM DeveloperMeetings edited by Tom Goddard
(diff)
6:33 PM DeveloperMeetings edited by Tom Goddard
(diff)
6:32 PM DeveloperMeetings edited by Tom Goddard
(diff)
6:32 PM Ticket #16777 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate
6:31 PM Dev2025-2-10 created by Tom Goddard
6:29 PM 2025-2-6 edited by Tom Goddard
(diff)
6:28 PM 2025-2-6 created by Tom Goddard
6:26 PM DeveloperMeetings edited by Tom Goddard
(diff)
6:04 PM Ticket #16769 (Crash on Mac waking from sleep) closed by Tom Goddard
can't reproduce: Appears Qt was doing a window resize. This is not the usual crash …
5:58 PM Ticket #16766 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: The message in the Report a Bug panel (shown in red) when you reported …
5:56 PM Ticket #16782 (Crash opening PDB file) created by chimerax-bug-report@…
[…]
4:18 PM Ticket #8967 (Various TCIA issues) closed by Zach Pearson
fixed: The SEG and CT should be aligned in today's builds.
4:08 PM Ticket #9468 (Opening TCIA NM fails) closed by Zach Pearson
fixed: I wish I knew why, but this opens in the daily build.
4:03 PM Ticket #9469 (TCIA KO image fails to open) closed by Zach Pearson
fixed: Fixed for the same reason as #9437
3:44 PM Ticket #8698 (Some DICOM files only appear using extreme threshold values) closed by Zach Pearson
invalid: Note to self: in the future it would be good to include which specific …
3:35 PM Ticket #16580 (Memory leak) closed by Eric Pettersen
fixed: Reverted to the older non-trigger/handler version of the code. Fix: …
3:31 PM Ticket #9437 (DICOM: bits_allocated is None) closed by Zach Pearson
fixed: Should be fixed in tomorrow's build. Before, the test for whether to …
1:29 PM Ticket #16780 (Crash moving window between screens) closed by Eric Pettersen
duplicate
1:28 PM Ticket #16779 (Crash closing window/tool) closed by Eric Pettersen
wontfix: Looking at the log, I'm guessing the user was closing an empty …
1:21 PM Ticket #16778 (Crash fetching from Toolshed) closed by Eric Pettersen
duplicate
1:20 PM Ticket #16758 (Crash initializing PyOpenGL) closed by Tom Goddard
duplicate: Duplicate of #16760
1:19 PM Ticket #16776 (Crash in event loop) closed by Eric Pettersen
can't reproduce: Either during or right after saving a session.
1:18 PM Ticket #16760 (Crash initializing PyOpenGL) closed by Tom Goddard
nonchimerax: The crash happens in line "import OpenGL.GL" importing the PyOpenGL …
1:16 PM Ticket #16775 (Crash fetching from Toolshed) closed by Eric Pettersen
duplicate
1:14 PM Ticket #16774 (ArtiaX: arrays used as indices must be of integer (or boolean) typ) closed by Eric Pettersen
duplicate: Old version of ArtiaX
7:50 AM Ticket #16781 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
7:03 AM Ticket #16780 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
6:31 AM Ticket #16779 (Crash closing window/tool) created by chimerax-bug-report@…
[…]
12:28 AM Ticket #16778 (Crash fetching from Toolshed) created by chimerax-bug-report@…
[…]

Feb 3, 2025:

6:00 PM Ticket #16777 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
4:26 PM Ticket #16776 (Crash in event loop) created by chimerax-bug-report@…
[…]
4:02 PM Ticket #16775 (Crash fetching from Toolshed) created by chimerax-bug-report@…
[…]
3:48 PM Ticket #16774 (ArtiaX: arrays used as indices must be of integer (or boolean) typ) created by chimerax-bug-report@…
[…]
2:51 PM Ticket #16773 (ChimeraX bug report submission) created by Zach Pearson
[…]
2:45 PM Ticket #16335 (Segmentations: KeyError deleting VolumeImage) closed by Zach Pearson
fixed: There's two issues here. One is the out of bounds error when creating …
2:16 PM Ticket #15576 (Crash closing lung data) closed by Zach Pearson
fixed: I think it's most likely that this was a crash from closing the …
1:35 PM Ticket #16772 (OpenGL on Ubuntu doesn't like the raycasting shader) closed by Zach Pearson
fixed: Fixed in …
1:30 PM Ticket #16771 (Crash on Mac waking from sleep) closed by Eric Pettersen
duplicate
1:18 PM Ticket #16772 (OpenGL on Ubuntu doesn't like the raycasting shader) created by Zach Pearson
[…]
12:29 PM Ticket #16771 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
11:12 AM Ticket #16770 (Restore new session in old ChimeraX) closed by Eric Pettersen
limitation
11:07 AM Ticket #16768 (ArtiaX: arrays used as indices must be of integer (or boolean) type) closed by Eric Pettersen
duplicate
11:01 AM Ticket #16767 (Can't save session because NewerVersionQuery not listed) closed by Eric Pettersen
duplicate: Hi Jiaxuan, Thanks for reporting this problem. It has been fixed in …
10:48 AM Ticket #16765 (Crash fetching from Toolshed) closed by Eric Pettersen
duplicate
10:46 AM Ticket #16764 (Crash in event loop) closed by Eric Pettersen
can't reproduce
10:44 AM Ticket #16763 (Crash browsing for folder name) closed by Eric Pettersen
can't reproduce
10:38 AM Ticket #16762 (Crash moving window between screens) closed by Eric Pettersen
duplicate
10:37 AM Ticket #16761 (Crash in garbage collection) closed by Eric Pettersen
duplicate
10:34 AM Ticket #16759 (Non-UTF-8 settings file) closed by Eric Pettersen
can't reproduce: Don't know how it got corrupted.
10:31 AM Ticket #16757 (Crash running save dialog) closed by Eric Pettersen
can't reproduce
10:28 AM Ticket #16756 (Crash in py_instance) closed by Eric Pettersen
duplicate
10:22 AM Ticket #16755 (Crash fetching from Toolshed) closed by Eric Pettersen
duplicate: Duplicate of #16707 Again, the user did a ton of work before the …
10:03 AM Ticket #16770 (Restore new session in old ChimeraX) created by chimerax-bug-report@…
[…]
9:30 AM Ticket #16769 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
8:16 AM Ticket #16768 (ArtiaX: arrays used as indices must be of integer (or boolean) type) created by chimerax-bug-report@…
[…]
7:59 AM Ticket #16767 (Can't save session because NewerVersionQuery not listed) created by jiaxuan.cheng@…
[…]
1:40 AM Ticket #16766 (Crash on Mac waking from sleep) created by helen.duyvesteyn@…
[…]
12:49 AM Ticket #16765 (Crash fetching from Toolshed) created by chimerax-bug-report@…
[…]

Feb 2, 2025:

6:42 PM Ticket #16764 (Crash in event loop) created by chimerax-bug-report@…
[…]

Feb 1, 2025:

11:47 PM Ticket #16763 (Crash browsing for folder name) created by chimerax-bug-report@…
[…]
11:37 PM Ticket #16762 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
7:03 AM Ticket #16761 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
2:37 AM Ticket #16760 (Crash initializing PyOpenGL) created by baymoscow2018@…
[…]
2:36 AM Ticket #16759 (Non-UTF-8 settings file) created by chimerax-bug-report@…
[…]
2:11 AM Ticket #16758 (Crash initializing PyOpenGL) created by chimerax-bug-report@…
[…]

Jan 31, 2025:

4:55 PM Ticket #16757 (Crash running save dialog) created by chimerax-bug-report@…
[…]
2:03 PM Ticket #16756 (Crash in py_instance) created by chimerax-bug-report@…
[…]
12:51 PM Ticket #16750 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate
12:06 PM ChangeLog edited by Elaine Meng
(diff)
11:58 AM Ticket #16755 (Crash fetching from Toolshed) created by chimerax-bug-report@…
[…]
11:04 AM Ticket #16753 (Crash in QGraphicsView::mouseMoveEvent) closed by Eric Pettersen
can't reproduce: Hard to say if its Qt's builtin handling of mouseMoveEvent, or our …
10:44 AM Ticket #16754 (Bundle ChimeraX-NMRSTAR has no module) created by chimerax-bug-report@…
[…]
9:56 AM Ticket #16753 (Crash in QGraphicsView::mouseMoveEvent) created by chimerax-bug-report@…
[…]
9:25 AM Ticket #16752 (Crash closing QDockWidget) closed by Eric Pettersen
can't reproduce
9:19 AM Ticket #16751 (Crash accessing Structure._graphics_changeds) closed by Eric Pettersen
can't reproduce
9:15 AM Ticket #16749 (Crash saving mmCIF) closed by Eric Pettersen
can't reproduce
9:12 AM Ticket #16747 (Crash on exit) closed by Eric Pettersen
duplicate
9:10 AM Ticket #16746 (Crash moving window between screens) closed by Eric Pettersen
duplicate
7:06 AM Ticket #16752 (Crash closing QDockWidget) created by chimerax-bug-report@…
[…]
5:48 AM Ticket #16751 (Crash accessing Structure._graphics_changeds) created by chimerax-bug-report@…
[…]
4:32 AM Ticket #16750 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
4:31 AM Ticket #16749 (Crash saving mmCIF) created by chimerax-bug-report@…
[…]
2:28 AM Ticket #16748 (alphafold pae does not accept wild cards for file patterns) created by matthias.vorlaender@…
[…]

Jan 30, 2025:

6:51 PM Ticket #16747 (Crash on exit) created by chimerax-bug-report@…
[…]
5:48 PM Ticket #16746 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
4:24 PM Ticket #16743 (Crash copying StructureSeq) closed by Eric Pettersen
fixed: When copying a StructureSeq where .structure is None (i.e. really a …
3:58 PM Ticket #16062 (ChimeraX bug report submission) closed by Zach Pearson
fixed: This was fixed for the 1.9 release.
3:33 PM Ticket #16744 (Crash copying StructureSeq) closed by Eric Pettersen
duplicate: Duplicate of #16743
2:54 PM Ticket #16745 (Warning when mmCIF metric table used for an AlphaFold 3 ligand) created by goddard@…
[…] 8xps_a_zmr_jan30_model.cif
1:14 PM Ticket #16524 (Flatpak success/fail message is wrong in nightly emails) closed by Zach Pearson
fixed: The script to determine the build age was reading a variable with a …
12:02 PM Ticket #16741 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate
11:51 AM Ticket #16739 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate
11:35 AM Ticket #6824 (No valid OpenGL context on Linux) closed by Zach Pearson
fixed: This was caused by running ChimeraX in a Wayland environment before we …
11:24 AM Ticket #16357 (ui view fourup: ZeroDivisionError) closed by Zach Pearson
fixed: You'll no longer get a series of tracebacks if you open plane viewers …
10:31 AM Ticket #16740 (Unable to restore session: need to update bundle) closed by Eric Pettersen
not a bug: Hi Irina, Thanks for reporting this problem. The message "update …
10:15 AM Ticket #16742 (ArtiaX session save: Unknown class name 'MarkerSetPlus') closed by Eric Pettersen
duplicate: Fixed as of ArtiaX 0.4.1 (this ticket has 0.3)
10:09 AM Ticket #16744 (Crash copying StructureSeq) created by chimerax-bug-report@…
[…]
9:58 AM Ticket #16743 (Crash copying StructureSeq) created by chimerax-bug-report@…
[…]
9:32 AM Ticket #16742 (ArtiaX session save: Unknown class name 'MarkerSetPlus') created by chimerax-bug-report@…
[…]
8:15 AM Ticket #16741 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
8:09 AM Ticket #16740 (Unable to restore session: need to update bundle) created by irina.i.serysheva@…
[…]
12:52 AM Ticket #16739 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]

Jan 29, 2025:

8:03 PM Ticket #16738 (SEQCROW: _read_nbo_coeffs: list index out of range) created by ud21003@…
[…]
6:15 PM Ticket #16737 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate
5:56 PM Ticket #16736 (Crash fetching from Toolshed or using save dialog) closed by Eric Pettersen
can't reproduce
5:48 PM Ticket #16533 (DLL load failed while importing _pyKVFinder: The specified module ...) closed by Eric Pettersen
can't reproduce: Maybe something wonky with PYTHONPATH?
5:47 PM Ticket #16737 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
5:47 PM Ticket #16736 (Crash fetching from Toolshed or using save dialog) created by chimerax-bug-report@…
[…]
5:24 PM Ticket #16734 (Foldseek: 'NoneType' object has no attribute 'query_chain') closed by Tom Goddard
duplicate: Fixed a few days ago. User press the Similar Structures panel …
5:22 PM Ticket #16735 (Crash fetching from Toolshed) closed by Eric Pettersen
duplicate: Again, how was the user able to carry out so many operations if the …
5:18 PM Ticket #16733 (Crash fetching from Toolshed) closed by Eric Pettersen
duplicate
5:16 PM Ticket #16732 (Find Cavities crash) closed by Eric Pettersen
duplicate: Duplicate of #16461
5:15 PM Ticket #16731 (Restore new session in old ChimeraX) closed by Eric Pettersen
limitation
4:35 PM Ticket #16721 (Log something when blastprotein finishes) closed by Zach Pearson
fixed: [https://github.com/RBVI/ChimeraX/commit/b8e236a67c18d6810e2f6fe9e5fad5
3:35 PM Ticket #16735 (Crash fetching from Toolshed) created by chimerax-bug-report@…
[…]
2:47 PM Ticket #16734 (Foldseek: 'NoneType' object has no attribute 'query_chain') created by chimerax-bug-report@…
[…]
2:43 PM Ticket #16733 (Crash fetching from Toolshed) created by chimerax-bug-report@…
[…]
12:28 PM Ticket #16732 (Find Cavities crash) created by chimerax-bug-report@…
[…]
12:03 PM Ticket #16568 (matchmaker with altlocs shown: No matrix compatible with both ...) closed by Eric Pettersen
fixed: Fix: …
12:01 PM Ticket #16729 (VIPERdb file: Unknown symmetry group) closed by Tom Goddard
fixed: Fixed in daily build dated Jan 30, 2025 or later. Apparently opening …
11:47 AM Ticket #16731 (Restore new session in old ChimeraX) created by chimerax-bug-report@…
[…]
11:33 AM Ticket #16726 (Crash moving window between screens) closed by Tom Goddard
duplicate
11:29 AM Ticket #16724 (Graphics crash, macOS 13.7.1, Intel Iris Plus Graphics 650) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
11:28 AM Ticket #16723 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate
10:07 AM Ticket #16730 (Crash moving window between screens) closed by Eric Pettersen
duplicate
10:04 AM Ticket #16728 (SBGrid install of 1.9 fails to launch; 1.8 works) closed by Greg Couch
limitation: Please file a bug with sbgrid. We don't control how they install …
10:00 AM Ticket #16730 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
9:33 AM Ticket #16725 (Crash in event loop) closed by Eric Pettersen
can't reproduce: Some occurrences of "Called accessibilityLabel on invalid object" in …
8:29 AM Ticket #16729 (VIPERdb file: Unknown symmetry group) created by rojas258@…
[…]
7:57 AM Ticket #16728 (SBGrid install of 1.9 fails to launch; 1.8 works) created by pedro.alzari@…
[…]
5:55 AM Ticket #16727 (ArtiaX: various errors) created by chimerax-bug-report@…
[…]
4:05 AM Ticket #16726 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
3:29 AM Ticket #16725 (Crash in event loop) created by chimerax-bug-report@…
[…]
1:23 AM Ticket #16724 (Graphics crash, macOS 13.7.1, Intel Iris Plus Graphics 650) created by chimerax-bug-report@…
[…]

Jan 28, 2025:

11:12 PM Ticket #16723 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
6:39 PM Ticket #16719 (Shift-"Move atoms" eventually becomes zoom) closed by Tom Goddard
not a bug: If you have any suggestions to improve the handling of the mouse …
6:28 PM Ticket #16722 (ISOLDE install errors, wrong version of Clipper) created by goddard@…
[…]
6:19 PM Ticket #16720 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate
6:16 PM Ticket #16721 (Log something when blastprotein finishes) created by Elaine Meng
It looks tricky to do something generically for web service jobs …
6:00 PM Ticket #16717 (DiffFit: sim_dir: The system cannot find the path specified) closed by Eric Pettersen
duplicate
5:56 PM Ticket #16720 (Crash on Mac waking from sleep) created by goddard@…
[…]
5:33 PM Ticket #16719 (Shift-"Move atoms" eventually becomes zoom) created by tmckeith@…
As a followup to #16705: "By the way, there’s an odd bug that shows …
5:31 PM Ticket #16705 (Crash getting StructureSeq.structure) closed by Eric Pettersen
can't reproduce: Hi Tim, No problem -- I imagine I'll get other reports and maybe I …
12:57 PM Ticket #16718 (DiffFit: 'DiffFitTool' object has no attribute 'vol') created by chimerax-bug-report@…
[…]
12:33 PM Ticket #16717 (DiffFit: sim_dir: The system cannot find the path specified) created by chimerax-bug-report@…
[…]
12:04 PM Ticket #16658 ('ArrayGridData' object has no attribute 'dicom_data') closed by Zach Pearson
duplicate: See #16575
12:04 PM Ticket #16657 ('MRCGrid' object has no attribute 'dicom_data') closed by Zach Pearson
duplicate: See #16575
12:04 PM Ticket #16603 (ArrayGridData' object has no attribute 'dicom_data') closed by Zach Pearson
duplicate: See #16575
12:04 PM Ticket #16575 (Orthoplanes: 'MRCGrid' object has no attribute 'dicom_data') closed by Zach Pearson
fixed: [https://github.com/RBVI/ChimeraX/commit/2b23b13c4745f3f52d820bef99319d
11:54 AM DeveloperMeetings edited by Tom Goddard
(diff)
11:53 AM Dev2025-2-3 created by Tom Goddard
11:52 AM DeveloperMeetings edited by Tom Goddard
(diff)
11:47 AM Ticket #16711 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate
11:47 AM Ticket #16710 (Crash moving window between screens) closed by Tom Goddard
duplicate
11:45 AM Ticket #16716 (DiffFit: sim_dir: The system cannot find the path specified) created by chimerax-bug-report@…
[…]
11:43 AM Ticket #16715 (Add species name filter for similar structures and BLAST searches) created by matthias.vorlaender@…
Matthias Vorlander asked for limiting BLAST search to a specified …
11:30 AM Ticket #16713 (Crash in QDockWidget event handling) closed by Eric Pettersen
can't reproduce
11:20 AM Ticket #16709 (Crash fetching from Toolshed) closed by Eric Pettersen
duplicate
11:18 AM Ticket #16708 (Crash fetching from Toolshed) closed by Eric Pettersen
duplicate
11:08 AM Ticket #16714 (Logging wrong for non-existent subcommands) created by Eric Pettersen
For commands with only subcommands, if a non-existent subcommand is …
10:13 AM Ticket #16713 (Crash in QDockWidget event handling) created by chimerax-bug-report@…
[…]
9:55 AM Ticket #16706 (Crash on Mac waking from sleep) closed by Eric Pettersen
duplicate
9:47 AM Ticket #16712 (Copick: 'Session' object has no attribute 'ArtiaX') created by kbonjour@…
[…]
9:45 AM Ticket #16711 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
5:52 AM Ticket #16710 (Crash moving window between screens) created by chimerax-bug-report@…
[…]

Jan 27, 2025:

4:59 PM Ticket #16682 (Volume raycasting with orthoplanes: Shader compile failure) closed by Zach Pearson
fixed: I think this is fixed by …
4:16 PM Dev2025-1-27 edited by Tom Goddard
(diff)
3:02 PM Dev2025-1-27 created by Tom Goddard
2:29 PM Ticket #16569 (Presets / Initial Styles / Original Look does not change tube helices ...) closed by Eric Pettersen
fixed: Okay, "fixed". "Fixed" is in quotes because although the tube helices …
2:27 PM Ticket #16698 (Similar Structures: self.results is None) closed by Tom Goddard
fixed: Fixed. Made Ligands and Clusters button show message in error panel …
2:21 PM Ticket #16709 (Crash fetching from Toolshed) created by chimerax-bug-report@…
[…]
1:46 PM Ticket #16697 (No Contacts output) closed by Eric Pettersen
fixed: Fixed. Fix in the next daily build. Again, thanks for reporting the …
1:36 PM Ticket #16708 (Crash fetching from Toolshed) created by chimerax-bug-report@…
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1:28 PM Ticket #16707 (Crash fetching from Toolshed) created by chimerax-bug-report@…
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1:21 PM Ticket #16706 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
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1:14 PM Ticket #16705 (Crash getting StructureSeq.structure) created by tmckeith@…
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1:05 PM Ticket #16704 (ISOLDE: Unparameterised residue detected) created by chimerax-bug-report@…
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12:59 PM Ticket #16699 (Window moved between screens(?)) closed by Tom Goddard
duplicate: In the ChimeraX Report a Bug panel it showed the following text in red …
12:55 PM Ticket #16702 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate
12:54 PM Ticket #16691 (Crash moving window between screens(?)) closed by Tom Goddard
duplicate
12:00 PM Ticket #16703 (ISOLDE/OpenMM in 1.10) closed by Eric Pettersen
fixed: There are _lot_ of ISOLDE releases. Added the requirement to the 1.9 …
11:11 AM Ticket #16701 (Crash opening PDB file) closed by Eric Pettersen
can't reproduce
11:10 AM Ticket #16700 (Crash opening PDB file) closed by Eric Pettersen
can't reproduce
11:02 AM Ticket #16696 (Restore new session in old ChimeraX) closed by Eric Pettersen
limitation
11:01 AM Ticket #16695 (delete all: OSError: exception: access violation) closed by Eric Pettersen
duplicate
11:00 AM Ticket #16694 (delete all: OSError: exception: access violation) closed by Eric Pettersen
duplicate: The later errors indicate that the Python-object-tracking table in the …
10:57 AM Ticket #16693 (delete all: OSError: exception: access violation) closed by Eric Pettersen
can't reproduce
10:51 AM Ticket #16692 (Crash closing main window(?)) closed by Eric Pettersen
can't reproduce
7:58 AM Ticket #16703 (ISOLDE/OpenMM in 1.10) created by chimerax-bug-report@…