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Timeline
Jan 22, 2019:
- 6:01 PM Ticket #1627 (Startup error: KeyError: 'ChimeraX_ISOLDE') created by
- […]
- 4:50 PM Ticket #1611 (AddH: list index out of range in roomiest()) closed by
- fixed: Fixed. AddH now treats CYS similarly to HIS (i.e. as "unspecified" …
- 12:34 PM Ticket #1623 (Session restore: msgpack: max_ext_len exceeded) closed by
- duplicate: Duplicate of #1616. Please try a newer daily build, dated 2019-01-17 …
- 12:15 PM Ticket #1626 (Traceback and no redraw after dragging Volume Viewer "solid" display ...) created by
- […]
- 6:30 AM Ticket #1624 (Wrong ChimeraX version when installing ISOLDE 1.0b1) closed by
- nonchimerax: ISOLDE 1.0b1 requires the ChimeraX 0.6 release. If you wait a day or …
Jan 21, 2019:
- 6:43 PM FAI edited by
- (diff)
- 5:59 PM Ticket #1624 (Wrong ChimeraX version when installing ISOLDE 1.0b1) created by
- […]
- 2:44 PM FAI edited by
- (diff)
Jan 19, 2019:
Jan 18, 2019:
- 4:37 PM Ticket #1622 (Need a method to clear atom's anisotropic B-factors) closed by
- fixed: a.aniso_u6 = None will now clear the aniso_u info.
- 4:01 PM Ticket #1621 (map planes slider doesn't go away when changed to non-plane with command) closed by
- fixed: Fixed. Changing a volume to show full region with a command now hides …
- 12:48 PM Ticket #1605 (Residue.atoms yields corrupted array after residue deleted) closed by
- fixed: The cost of the check seems to be negligible, so I have added it. …
- 12:25 PM Ticket #1256 (Module can't find shared lib) closed by
-
fixed: Appears to be fixed (after many iterations of
bundle_builder.py). - 6:49 AM Ticket #1622 (Need a method to clear atom's anisotropic B-factors) created by
- Not to set the entries to zero, but to clear the Atom.aniso_u field …
Jan 17, 2019:
- 3:17 PM Ticket #1621 (map planes slider doesn't go away when changed to non-plane with command) created by
- If I open a map file that initially displays as a single plane with a …
- 3:11 PM Ticket #1620 ("move planes" mouse mode behavior with multiple maps) created by
- I don't know if this is a request for enhancement or a bug report, but …
- 2:59 PM Ticket #1617 (Blast Protein lower case chain) closed by
- fixed: Fixed in 4c653742c. Blast database for PDB from NCBI uses …
- 1:38 PM Ticket #1618 (Session restore: msgpack: max_ext_len exceeded) closed by
- duplicate: Duplicate of #1616. Please send me a session file so I can test if …
- 11:58 AM Ticket #1619 (draw_xor_rectangle: draw() takes 3 positional arguments but 4 were given) closed by
- duplicate: Fixed months ago. Bug reported in Sept ChimeraX build.
- 10:05 AM Ticket #1619 (draw_xor_rectangle: draw() takes 3 positional arguments but 4 were given) created by
- […]
- 12:49 AM Ticket #1618 (Session restore: msgpack: max_ext_len exceeded) created by
- […]
Jan 16, 2019:
- 11:54 PM FAI edited by
- (diff)
- 5:28 PM Ticket #1617 (Blast Protein lower case chain) created by
- Blast results have lower case chains reported as a doubling of the …
- 4:40 PM Ticket #1613 (windowing mouse mode swap horizontal/vertical behavior) closed by
- fixed: Fixed. Made vertical drag do leveling and horizontal do windowing. …
- 4:26 PM Ticket #1615 (Drag select: glDrawBuffer(GL_FRONT): invalid operation) closed by
- fixed: Fixed. Drawing code pushed the silhouette framebuffer and then an …
- 3:49 PM Ticket #1616 (Session restore: msgpack: max_ext_len exceeded) created by
- […]
- 3:45 PM Ticket #1615 (Drag select: glDrawBuffer(GL_FRONT): invalid operation) created by
- […]
- 3:39 PM Ticket #1608 (Problem reshowing volume series) closed by
- can't reproduce: Not sure how you removed the threshold. Perhaps there is a bug where …
- 2:56 PM Ticket #1121 (Erroneous bonding at RNA chain break in PDB 5an9) closed by
- fixed: Apparently fixed by other previous changes/fixes.
- 10:52 AM ChangeLog edited by
- (diff)
- 9:33 AM Ticket #1614 (RFE: visual (text) feedback of window/threshold values) created by
- This could apply to both the graphics window in desktop use and in VR …
- 9:29 AM Ticket #1613 (windowing mouse mode swap horizontal/vertical behavior) created by
- Looks like both Horos and 3DSlicer windowing mouse modes use vertical …
Jan 15, 2019:
- 10:32 PM Ticket #1612 (DICOM unsupported value type) closed by
- fixed: Ok, can read this segmentation DICOM file now. This took more work …
- 1:35 PM Ticket #1540 (AddH: no lone pairs on acceptor) closed by
- fixed: Fixed by implementing tau test for aniline as an acceptor so that it …
- 12:41 PM Ticket #1612 (DICOM unsupported value type) created by
- […] 11-06-2014-1-96508.zip
- 11:34 AM Ticket #1561 (Bundle build system does not recompile changed C++ files) closed by
- fixed: Machine this bug occurred on had numpy 1.14.3 in ChimeraX. Updating …
- 7:55 AM Ticket #1611 (AddH: list index out of range in roomiest()) created by
- […]
- 7:55 AM Ticket #1610 (AddH: acc_phi_psi() takes 8 positional arguments but 9 were given) created by
- […]
- 3:50 AM Ticket #1608 (Problem reshowing volume series) created by
- […]
- 1:48 AM Ticket #1607 (Reading DCD: UnicodeDecodeError: unexpected end of data) created by
- […]
Jan 14, 2019:
- 6:00 PM Ticket #1606 (Singular matrix reading DICOM time series) closed by
- fixed: Error was caused by reading a DICOM time series which is not yet …
- 5:03 PM Ticket #1124 (Remove bot traffic from Toolshed download stats?) closed by
-
fixed: I've added a
robots.txtthat forbids mining all cxtoolshed pages. - 10:41 AM Ticket #1606 (Singular matrix reading DICOM time series) created by
- […] 10-01-2010-339068828-GBMintracranial-631.2.zip
- 4:42 AM Ticket #1605 (Residue.atoms yields corrupted array after residue deleted) created by
- If I have a model open: […]
Jan 11, 2019:
- 4:34 PM Ticket #1602 (Problem playing through multiple volume series: object of type ...) closed by
- fixed: Fixed. Attempting to use map series slider after first map in series …
- 3:44 PM Ticket #1603 (Multiple OpenGL errors) closed by
- nonchimerax: Inadequate graphics driver. Incomplete framebuffer errors are startup.
- 9:56 AM Ticket #1603 (Multiple OpenGL errors) created by
- […]
- 1:44 AM Ticket #1602 (Problem playing through multiple volume series: object of type ...) created by
- […]
Jan 10, 2019:
- 6:31 PM Ticket #1600 (Reading map: 'numpy.float64' object cannot be interpreted as an integer) closed by
- fixed: Fixed. Move planes mouse mode in orthoplanes mode was broken because …
- 3:13 PM Ticket #1601 (test notify-when-closed) closed by
- not a bug: Here we go!
- 3:12 PM Ticket #1601 (test notify-when-closed) created by
- 3:04 PM Ticket #1600 (Reading map: 'numpy.float64' object cannot be interpreted as an integer) created by
- […]
- 2:43 PM 2019-01-10 created by
- 2:08 PM DeveloperMeetings edited by
- (diff)
- 2:08 PM DeveloperMeetings2018 created by
- 1:45 PM Ticket #1599 (RFE: command (or other way) to restore initial display settings of a volume) created by
- Would be nice if there was a way to restore the thresholds and perhaps …
- 1:41 PM Ticket #1598 (RFE: command to report current volume-rendering settings) created by
- I keep wishing for some command to report the current rendering …
- 11:09 AM Ticket #1597 (error adding distance if Distances window previously closed) closed by
- fixed: Wasn't deregistering all trigger handlers when tool deleted
- 9:56 AM Ticket #1597 (error adding distance if Distances window previously closed) created by
- I had a few distances, showed the Distance tool, and then deleted all …
Jan 9, 2019:
- 5:11 PM Ticket #1596 (Volume Viewer interface not happy with non-Z planes) closed by
- fixed: Fixed. Volume viewer code was not switching back to showing full …
- 3:54 PM Ticket #1596 (Volume Viewer interface not happy with non-Z planes) created by
- If I use a command to show non-Z planes, e.g. vol #1 planes y,110 …
- 3:21 PM Ticket #1595 (glDrawBuffer(GL_FRONT): invalid operation) closed by
- duplicate: Fourth report of this error on different computer systems. Unclear …
- 2:25 AM Ticket #1595 (glDrawBuffer(GL_FRONT): invalid operation) created by
- […]
Jan 8, 2019:
- 11:16 AM Ticket #1539 (AddH: incorrect removal from hbond_info) closed by
- fixed: Metals being noted as "acceptors" also needed coordinators noted as donors.
- 10:47 AM Ticket #1594 (Eventually parsing of save-image keyword 'transparentBackground' goes south) closed by
- fixed
- 10:26 AM Ticket #1592 (select by minimum/maximum length selects non-pseudobonds) closed by
- fixed: Ok. If minimumLength or maximumLength is specified with the select …
- 10:00 AM Ticket #1591 (Molecular surface session restore: can't set attribute) closed by
- duplicate: duplicate of #1425
- 8:27 AM Ticket #1594 (Eventually parsing of save-image keyword 'transparentBackground' goes south) created by
- […]
- 7:58 AM ChangeLog edited by
- (diff)
Jan 7, 2019:
- 4:48 PM Ticket #1593 (multi-level "sel back/forward") created by
- Implement multi-level selection-only undo/redo as "sel back/forward" …
- 2:22 PM Ticket #1590 (Session restore of graphics: self._positions is None) closed by
- can't reproduce: Ok. Seems likely that there was an error on saving the session then. …
- 1:36 PM Ticket #1592 (select by minimum/maximum length selects non-pseudobonds) created by
- The select command minimumLength and maximumLength options were …
- 11:32 AM Ticket #1591 (Molecular surface session restore: can't set attribute) created by
- […]
Jan 5, 2019:
Jan 4, 2019:
- 8:00 PM Ticket #1588 (glDrawBuffer(GL_FRONT): invalid operation) closed by
- can't reproduce: Will wait for another report before putting in extra debug code.
- 7:57 PM Ticket #1569 (OpenGL startup error: invalid enumerant) closed by
- can't reproduce: Appears to be inadequate graphics driver giving an error on startup on …
- 10:51 AM Ticket #1589 (Selection demotion: Drawing: can't set attribute) closed by
- fixed: Fixed.
Jan 3, 2019:
- 4:09 PM Ticket #1589 (Selection demotion: Drawing: can't set attribute) created by
- […]
- 11:28 AM Ticket #1549 (AddH: More than 2 coplanar positions specified!) closed by
- fixed
- 9:53 AM Ticket #1588 (glDrawBuffer(GL_FRONT): invalid operation) created by
- […]
Jan 2, 2019:
- 4:50 PM Ticket #1585 ("open browse" file browser does not allow multi-file selection and opening) closed by
- fixed: Fixed by expanding upon 'RepeatOf's hacked argument parsing.
- 12:45 PM Ticket #694 (Add C-alpha trace depictions) closed by
- fixed: Chain trace display for atomic structures is on by default now.
- 11:37 AM Ticket #863 (collate message as HTML) closed by
- fixed
- 10:14 AM Ticket #1586 (Seq Viewer: unproved enter() call on region browser) closed by
- duplicate: previously fixed
- 4:34 AM Ticket #1587 (Registration internal error) created by
- […]
Dec 29, 2018:
Dec 28, 2018:
- 4:17 PM Ticket #1585 ("open browse" file browser does not allow multi-file selection and opening) created by
- per summary
- 1:31 PM Ticket #1583 (Updating 3D label triggers: KeyError: 'setting changed') closed by
- duplicate: Fixed 5 days after the date of the version in the bug report.
- 1:12 PM Ticket #1581 (NameError when deleting from command history) closed by
- duplicate: Fixed a few days ago.
- 1:08 PM Ticket #1572 (Some kind of resizing crash) closed by
- can't reproduce
Dec 27, 2018:
- 12:23 PM Ticket #1584 (multi-file open incorrectly logged) created by
- If I use menu: File... Open and use click + Shift-click to choose …
Dec 26, 2018:
Dec 23, 2018:
- 11:15 PM Ticket #1582 (Volume Viewer deleted twice(?)) created by
- […]
- 5:15 AM Ticket #1581 (NameError when deleting from command history) created by
- […]
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