Opened 7 years ago

Closed 7 years ago

#1586 closed defect (duplicate)

Seq Viewer: unproved enter() call on region browser

Reported by: chimerax-bug-report@… Owned by: pett
Priority: normal Milestone:
Component: Sequence Version: 0.7
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        Windows-10-10.0.17134
ChimeraX Version: 0.7 (2018-08-07)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 0.7 (2018-08-07)  
OpenGL version: 3.3.0 - Build 23.20.16.4973  
OpenGL renderer: Intel(R) UHD Graphics 620  
OpenGL vendor: Intel  
How to cite UCSF ChimeraX  

open
C:/Users/LocalAdmin/Documents/lab/structure/pdb_data/RNA_Pol_I/Sadian_Muller_PIC_2017/5oa1.pdb

Summary of feedback from opening
C:/Users/LocalAdmin/Documents/lab/structure/pdb_data/RNA_Pol_I/Sadian_Muller_PIC_2017/5oa1.pdb  
---  
warnings | Residues corresponding to PDB SEQRES record for chain S are
missing. Ignoring record as basis for sequence.  
Residues corresponding to PDB SEQRES record for chain T are missing. Ignoring
record as basis for sequence.  
  
Opened PDB data containing 43459 atoms and 44452 bonds  
Chain information for 5oa1.pdb #1  
---  
Chain | Description  
1 | ala-ala-ala-ala-ala-ala-ala-ala-ala-ala-ala-ala-ala  
2 | ala-ala-ala-ala-ala-ala-ala-ala-ala-ala-ala-ala-ala-ala- ala-ala-ala-ala-
ala  
3 9 | ala-ala-ala-ala-ala-ala-ala-ala-ala  
4 | ala-ala-ala-ala-ala-ala-ala-ala-ala-ala-ala-ala-ala-ala- ala-ala-ala-ala-
ala-ala-ala-ala-ala-ala  
5 Q | ala-ala-ala-ala-ala-ala-ala-ala-ala-ala-ala-ala-ala-ala- ala-ala  
6 8 | ala-ala-ala-ala-ala-ala-ala-ala-ala-ala  
7 | ala-ala-ala-ala-ala-ala-ala-ala-ala-ala-ala-ala-ala-ala- ala-ala-ala-ala-
ala-ala-ala-ala-ala-ala-ala  
A | DNA-directed RNA polymerase I subunit RPA190  
B | DNA-directed RNA polymerase I subunit RPA135  
C | DNA-directed RNA polymerases I and III subunit RPAC1  
D | DNA-directed RNA polymerase I subunit RPA14  
E | DNA-directed RNA polymerases I, II, and III subunit RPABC1  
F | DNA-directed RNA polymerases I, II, and III subunit RPABC2  
G | DNA-directed RNA polymerase I subunit RPA43  
H | DNA-directed RNA polymerases I, II, and III subunit RPABC3  
I | DNA-directed RNA polymerase I subunit RPA12  
J | DNA-directed RNA polymerases I, II, and III subunit RPABC5  
K | DNA-directed RNA polymerases I and III subunit RPAC2  
L | DNA-directed RNA polymerases I, II, and III subunit RPABC4  
M | DNA-directed RNA polymerase I subunit RPA49  
N | DNA-directed RNA polymerase I subunit RPA34  
O | RNA polymerase I-specific transcription initiation factor RRN3  
P | ala-ala-ala-ala-ala-ala-ala-ala-ala-ala-ala-ala-ala-ala- ala-ala-ala-ala-
ala-ala-ala-ala  
R | ala-ala-ala-ala-ala-ala-ala-ala-ala-ala-ala-ala-ala-ala- ala-ala-ala-ala-
ala-ala-ala  
S | DNA (49-mer)  
T | DNA (56-mer)  
U | RNA polymerase I-specific transcription initiation factor RRN7  
V | RNA polymerase I-specific transcription initiation factor RRN6  
W | RNA polymerase I-specific transcription initiation factor RRN11  
Y | ala-ala-ala-ala-ala-ala-ala-ala-ala-ala-ala-ala  
Z | ala-ala-ala-ala-ala-ala-ala-ala-ala-ala-ala-ala-ala-ala- ala  
  

sequence chain #1/S

Alignment identifier is 1.S  

sequence chain #1/T

Alignment identifier is 1.T  

sequence chain #1/U

Alignment identifier is 1.U  

sequence chain #1/I

Alignment identifier is 1.I  
Traceback (most recent call last):  
  File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\seq-
view\region_browser.py", line 438, in <lambda>  
    lambda e, s=self: s._mouse_up_cb(e, double=True)  
  File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\seq-
view\region_browser.py", line 1538, in _mouse_up_cb  
    self.enter()  
AttributeError: 'RegionBrowser' object has no attribute 'enter'  
  

AttributeError: 'RegionBrowser' object has no attribute 'enter'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\seq-
view\region_browser.py", line 1538, in _mouse_up_cb  
self.enter()  
  
See log for complete Python traceback.  
  
If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
describe what you were doing and include a copy of the contents of the log.
Don't include any data you wish to remain private since a publicly viewable
bug report will be created.  




OpenGL version: 3.3.0 - Build 23.20.16.4973
OpenGL renderer: Intel(R) UHD Graphics 620
OpenGL vendor: Intel

Change History (2)

comment:1 by pett, 7 years ago

Component: UnassignedSequence
Owner: set to pett
Platform: all
Project: ChimeraX
Status: newaccepted
Summary: ChimeraX bug report submissionSeq Viewer: unproved enter() call on region browser
Version: 0.7

comment:2 by pett, 7 years ago

Resolution: duplicate
Status: acceptedclosed

previously fixed

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