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Timeline
Sep 20, 2018:
- 3:00 PM 2018-09-20 created by
- 2:09 PM DeveloperMeetings edited by
- (diff)
- 1:52 PM Ticket #1312 (Session restoring problem) closed by
- not a bug: Not a bug per se, since we are not yet guaranteeing session file …
- 8:16 AM Ticket #1315 (Support volume mesh line widths > 1) created by
- […]
- 6:24 AM Ticket #1314 (OpenGL window unresponsive after sleeping laptop) created by
- Possible this is specific to my laptop (an Asus ROG Strix GL502VS, for …
- 5:21 AM Ticket #1313 (misleading error message) created by
- […]
- 2:54 AM Ticket #1312 (Session restoring problem) created by
- […]
Sep 19, 2018:
- 12:27 PM Ticket #1311 (Windows 10 display scaling gives wrong GUI text sizes) created by
- On high-dpi displays (e.g. 4K displays, or 2560x1440 laptop screens) …
Sep 18, 2018:
- 5:21 PM Ticket #1306 (pseudobond labels not on top) closed by
- fixed: Fixed. This was a bit tricky to fix. Needed to add a new graphics …
- 2:08 PM Ticket #1303 (Addh protonates metal-coordinated cysteines) closed by
- not a bug
- 11:27 AM Ticket #1309 (RFE: per-model "stick" radius for singleton atoms) closed by
- fixed: Fixed. Made the size command stickRadius option set the per-structure …
Sep 17, 2018:
- 3:52 PM Ticket #1310 (Help link in Log wrong URL for "bumps" command) created by
- […]
- 3:14 PM Ticket #1309 (RFE: per-model "stick" radius for singleton atoms) created by
- We didn't specifically discuss how to control this, but seems natural …
- 2:52 PM Ticket #1308 (label shown on black rectangles no matter what (sometimes?)) closed by
- fixed: Fixed. This bug was introduced from the fix a week or two ago of …
- 2:38 PM Ticket #1307 ("label delete bonds" deletes pseudobond labels) closed by
- fixed: Fixed. Label delete code was not distinguishing bonds and pseudobonds.
- 2:22 PM Ticket #1308 (label shown on black rectangles no matter what (sometimes?)) created by
- I say "sometimes" because I don't always see it, but "no matter what" …
- 2:11 PM Ticket #1307 ("label delete bonds" deletes pseudobond labels) created by
- summary says it all... e.g. open 1bzm ~cartoon la #1 pseudobonds lab …
- 1:59 PM Ticket #1306 (pseudobond labels not on top) created by
- When I show pseudobond labels, they are not on top and cannot be made …
- 1:39 PM Ticket #1304 (AnnotationProxy.name = None) closed by
- fixed: Fixed in 6bb56ff5d.
- 1:29 PM 2018-09-17 edited by
- (diff)
- 11:38 AM Ticket #1225 (RFE: synonyms "round" "square" for cartoon style xsection) closed by
- fixed: Fixed in 1d7bb65a3.
- 11:11 AM Ticket #1230 (Better bundle_builder support for Cython) closed by
- fixed: Fixed (mostly). RBVI bundles all build using the new version which …
- 10:54 AM 2018-09-17 created by
- 10:43 AM Ticket #1305 (Need mechanism for restarting ChimeraX after installing in-use bundle) created by
- When a bundle is already in use when a new version is asked to be …
- 10:32 AM DeveloperMeetings edited by
- (diff)
Sep 14, 2018:
- 7:13 PM Ticket #1295 (Problem restoring VolumeSurface in session) closed by
- fixed: Fixed. Replacing maps when restoring a session was broken when map …
- 5:14 PM Ticket #1304 (AnnotationProxy.name = None) created by
- […]
- 12:53 PM Ticket #1291 (bumps command: attempt to get argmax of an empty sequence) closed by
- fixed: Fixed. Bumps made a structure with no atoms since there were no …
- 11:37 AM Ticket #1299 (Can't submit report bug) closed by
- fixed: I see that the Report a Bug dialog does provide a good error message …
- 3:53 AM Ticket #1303 (Addh protonates metal-coordinated cysteines) created by
- Sorry to keep picking on AddH - it's a really useful tool that's …
Sep 13, 2018:
- 6:34 PM Ticket #1302 (Export colors with OBJ files) created by
- Currently Chimera exports a .mtl file with a .obj file that lists …
- 6:14 PM Ticket #1300 (Error calling glClear on status bar: invalid enumerant) closed by
- nonchimerax: We don't support Windows 7. The error says it is a graphics driver …
- 6:12 PM Ticket #1301 (OpenGL error invalid enumerant at startup) closed by
- nonchimerax: The error message explains clear enough this is a graphics driver …
- 3:48 PM Ticket #1301 (OpenGL error invalid enumerant at startup) created by
- […]
- 12:59 AM Ticket #1300 (Error calling glClear on status bar: invalid enumerant) created by
- […]
Sep 12, 2018:
- 10:29 AM Ticket #1299 (Can't submit report bug) created by
- (for obvious reasons, actually originally submitted to chimera-bugs) …
- 9:52 AM Ticket #1298 (No module named 'pip.wheel') created by
- […]
Sep 11, 2018:
- 5:25 PM Ticket #1285 (ChimeraX bug report submission) closed by
- can't reproduce: Hi Han, Thanks for letting me know. My best guess is that it's some …
- 3:03 PM Ticket #1297 (Handle tinyarray in session save/restore) created by
- […]
- 2:28 PM Ticket #1296 (vseries measure: No module named 'chimerax.core.measure') created by
- […]
- 2:13 PM Ticket #1294 (Startup error: add_select_menu_entry() missing 1 required positional ...) closed by
- fixed: Had a spurious extra arg declared in add_select_menu_entry()
- 1:38 PM Ticket #1293 (AddH fails to add hydrogen to specific peptide nitrogen) closed by
- not a bug: Man, I am bad at cross-checking things. Chimera 1 _also_ does not add …
- 12:09 PM Ticket #1295 (Problem restoring VolumeSurface in session) created by
- […]
- 12:06 PM Ticket #1294 (Startup error: add_select_menu_entry() missing 1 required positional ...) created by
- […]
- 5:50 AM Ticket #1293 (AddH fails to add hydrogen to specific peptide nitrogen) created by
- The attached file is snipped out of a much larger structure …
- 1:02 AM Ticket #1292 (Registration code not handling some date formats) created by
- […] 3k3a.pdb1
Sep 10, 2018:
- 3:59 PM Ticket #1291 (bumps command: attempt to get argmax of an empty sequence) created by
- […]
- 3:38 PM Ticket #1290 (Preserve hide dust settings when playing volume series) created by
- Preserve hide dust settings when playing a volume series. Chimera …
- 2:37 PM Ticket #1286 ('AtomsDrawing' object has no attribute 'any_part_selected') closed by
- fixed: Fixed. Move selection mouse mode was broken by changes a week ago …
- 11:31 AM Ticket #1287 ('AtomsDrawing' object has no attribute 'any_part_selected') closed by
- duplicate
- 11:17 AM Ticket #1282 (UnicodeDecodeError reporting mac crash) closed by
- fixed: Fixed. Bug reporter raised an error when Mac crash dump contains …
- 11:16 AM Ticket #1289 (Test of bug reporter with non-ascii character in Mac crash dump) closed by
- fixed: Fix worked.
- 11:14 AM Ticket #1289 (Test of bug reporter with non-ascii character in Mac crash dump) created by
- […]
- 11:00 AM Ticket #1284 (CageBuilder session failure) closed by
- fixed: Fixed in tonight's daily build.
- 8:12 AM Ticket #1288 (Toolshed error) created by
-
Right at the end of
make app-install, I get the below traceback, …
Sep 9, 2018:
Sep 7, 2018:
- 3:52 PM 2018-09-06 edited by
- (diff)
- 3:41 PM Ticket #1277 (addh protonates wrong HIS nitrogen) closed by
- fixed: Thanks for finding this! It was also a problem in the original …
- 2:27 PM 2018-09-06 edited by
- (diff)
- 2:24 PM 2018-09-06 edited by
- (diff)
- 2:24 PM 2018-09-06 edited by
- (diff)
- 12:51 PM Ticket #1286 ('AtomsDrawing' object has no attribute 'any_part_selected') created by
- […]
- 4:42 AM Ticket #1285 (ChimeraX bug report submission) created by
- […]
Sep 6, 2018:
- 6:35 PM Ticket #1284 (CageBuilder session failure) created by
- […]
- 4:29 PM Ticket #1283 (Use alt key to emulate middle mouse with trackpad on Windows laptops) created by
- Currently there is no easy way to emulate middle mouse drag to move …
- 2:28 PM 2018-09-06 created by
- 2:05 PM DeveloperMeetings edited by
- (diff)
- 1:36 PM Ticket #312 (option to save Log and/or Cmd History as HTML with executable links) closed by
- fixed: Added a "carriage return" icon to rerun the command. If a saved log …
- 12:18 PM Ticket #1281 (clashes failing to recognise H-bonds with explicit hydrogens) closed by
- fixed: Thanks for finding this and supplying a fix. I've applied your fix to …
- 11:50 AM ChangeLog edited by
- (diff)
- 11:28 AM Ticket #1282 (UnicodeDecodeError reporting mac crash) created by
- […]
- 8:17 AM Ticket #1281 (clashes failing to recognise H-bonds with explicit hydrogens) created by
-
Easy fix. In
clashes.py, line 176: […] should be: […]
Sep 4, 2018:
- 2:56 PM Ticket #1280 (Could not parse stylesheet) closed by
- fixed: This was fixed a few days ago. Get the latest daily build. The …
- 12:04 PM Ticket #1280 (Could not parse stylesheet) created by
- […]
Aug 31, 2018:
- 2:20 PM Ticket #1276 ("Could not parse stylesheet" errors) closed by
- fixed: Happened when model panel tried to show a multi-color button, which …
- 8:56 AM Ticket #1279 (Problem installing Clipper bundle) created by
- […]
- 7:32 AM Ticket #1278 (Option to only rebuild Python component of bundle) created by
- I realise this is somewhat complicated because bundle_builder relies …
- 5:36 AM Ticket #1277 (addh protonates wrong HIS nitrogen) created by
- In 5ont, His B334 is clearly and unambiguously placed with its NE2 …
Aug 30, 2018:
- 4:23 PM Ticket #1276 ("Could not parse stylesheet" errors) created by
- […]
- 2:41 PM 2018-08-30 created by
- 2:17 PM DeveloperMeetings edited by
- (diff)
- 1:51 PM Ticket #1275 (Get residue's bonded neighbors) closed by
- fixed: Well, it was trickier than I thought (besides no Atoms.bonds, …
- 6:54 AM Ticket #1275 (Get residue's bonded neighbors) created by
- Easy enough to implement something for myself, but seems like a …
Aug 29, 2018:
- 2:08 PM Ticket #1274 (PDB HELIX record format) closed by
- fixed: Easier than I though since the formatting code already supported that …
- 1:37 PM Ticket #1267 (Error deleting atoms) closed by
- fixed: The new create-pseudobond-across-deleted-gap code was potentially …
- 1:15 PM Ticket #1273 (More accurately name Drawing highlighting API) closed by
- fixed
- 8:27 AM Ticket #1274 (PDB HELIX record format) created by
- If I submit a PDB file written by ChimeraX to PHENIX for refinement, …
Aug 28, 2018:
- 4:52 PM Ticket #1273 (More accurately name Drawing highlighting API) created by
- The Drawing API uses the term 'selected' when it really means …
- 4:47 PM Ticket #1264 (Drawing.selected inaccurate) closed by
- fixed: Implemented Model.all_parts_selected, which defaults to return …
- 10:43 AM Ticket #1272 (Crash in chem_group::find_5ring_OR2) closed by
- can't reproduce: Not the first report of this, but the code looks fine AFAICT, so I …
- 10:01 AM Ticket #1272 (Crash in chem_group::find_5ring_OR2) created by
- […]
Aug 27, 2018:
- 4:53 PM Ticket #1271 (regression in daily build - can't open molecule in nogui mode) closed by
- fixed: Fixed. I added code a few days ago to make the opengl context current …
- 3:01 PM Ticket #1259 (1tqn assembly: incomplete multiline data value) closed by
- fixed: The fix is in. Will be in builds dated 2018-8-27 or later.
- 2:28 PM Ticket #1271 (regression in daily build - can't open molecule in nogui mode) created by
- […]
- 2:05 PM Ticket #1269 (Qt crash) closed by
- can't reproduce
- 8:52 AM Ticket #1270 (pbm running ISOLDE (OpenMM)) created by
- […]
- 1:45 AM Ticket #1269 (Qt crash) created by
- […]
Aug 24, 2018:
- 5:42 PM Ticket #1267 (Error deleting atoms) created by
- […] ecoli_ribosome.cxc
- 5:00 PM Wildcards edited by
- (diff)
- 4:53 PM Wildcards edited by
- (diff)
- 4:45 PM Wildcards edited by
- (diff)
- 4:40 PM Wildcards edited by
- (diff)
- 4:37 PM Wildcards edited by
- (diff)
- 4:28 PM Wildcards edited by
- (diff)
- 4:22 PM Wildcards created by
- 4:16 PM 2018-08-23 edited by
- (diff)
Aug 23, 2018:
- 2:50 PM 2018-08-23 created by
- 2:08 PM DeveloperMeetings edited by
- (diff)
- 1:16 PM Ticket #1266 (crosslinks and sequence viewer problems) closed by
- fixed: Hi Pascal, Thanks for reporting the problem. The issue was that some …
- 12:31 PM Ticket #1265 (Color command: min() arg is an empty sequence) closed by
- fixed: Fixed. Color by bfactor command with no atoms raised this error.
- 4:12 AM Ticket #1266 (crosslinks and sequence viewer problems) created by
- […]
- 3:39 AM Ticket #1265 (Color command: min() arg is an empty sequence) created by
- […]
Aug 22, 2018:
- 3:48 PM Ticket #1264 (Drawing.selected inaccurate) created by
- If I open any model (e.g. 1a0m) and 'sel #1', the model instance's …
- 2:37 PM Ticket #1263 (Setting view background color changes clipping) closed by
- not a bug: You set the background color RGBA to (255,255,255,1). This is almost …
- 2:28 PM Ticket #1261 (OpenGL error: invalid value) closed by
- fixed: I don't know why you are pasting a sequence into the ChimeraX …
- 2:21 PM Ticket #1262 (Associating structures with sequence: local variable 'best_match_map' ...) closed by
- fixed: Fixed; one of the changes necessitated when translating the …
- 12:10 PM ChangeLog edited by
- (diff)
- 11:29 AM Ticket #1263 (Setting view background color changes clipping) created by
- […] Screen Shot 2018-08-22 at 2.28.01 PM.png
- 10:26 AM Ticket #1262 (Associating structures with sequence: local variable 'best_match_map' ...) created by
- […]
- 1:48 AM Ticket #1261 (OpenGL error: invalid value) created by
- […] åºå åæåå ä¿®æ¹ åçé.doc
Aug 21, 2018:
- 2:13 PM Ticket #1260 (Clipping after changing lighting option) closed by
- can't reproduce: I change the lighting all the time and have never seen this clipping …
- 2:03 PM Ticket #1260 (Clipping after changing lighting option) created by
- […] [[Image(...)]] [[Image(...)]]
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