Timeline



Nov 30, 2015:

3:22 PM 2015-11-30 edited by Conrad Huang
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3:12 PM DeveloperMeetings edited by Conrad Huang
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3:11 PM 2015-11-30 created by Conrad Huang
10:27 AM EarlyReleaseRequirements edited by Tom Goddard
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10:24 AM EarlyReleaseRequirements edited by Tom Goddard
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Nov 25, 2015:

11:53 AM Ticket #200 ("save image" should have default format) closed by Tom Goddard
fixed: Fixed. It now saves junk.png.
11:23 AM Ticket #200 ("save image" should have default format) created by Elaine Meng
Command "save image filename" gives traceback. Although this could be …
11:17 AM Ticket #199 (closing STL opened from session file gives traceback) created by Elaine Meng
After restoring the attached session (just one STL model), command …
11:15 AM Ticket #198 (finish session molecular data save/restore) created by Elaine Meng
Until finished, molecular structure save/restore produces a traceback.
10:11 AM Ticket #197 (testing2) created by Conrad Huang
[…]

Nov 24, 2015:

3:35 PM Ticket #196 ("save" usage shows unusable "quality" option) closed by Greg Couch
fixed: Fixed -- quality was left out of save command, but was in 'save image' …
2:23 PM Ticket #173 (command case comparison needs to be more sophisticated) closed by Greg Couch
fixed
2:20 PM Ticket #193 ("save" format keyword gives traceback) closed by Greg Couch
fixed: Modified the EnumOf annotation to take iterators as well as sequences. …
1:58 PM Ticket #196 ("save" usage shows unusable "quality" option) created by Elaine Meng
"usage save" shows a "quality" option. I thought I heard somebody …[…]
1:39 PM Ticket #195 (error trying to save session) closed by pett
fixed
11:27 AM Ticket #195 (error trying to save session) created by Elaine Meng
open 1zik save ~/Desktop/junk.cxs Error processing trigger "end save …
11:00 AM Ticket #194 (Can't select all text in log with Cmd-A) created by Tom Goddard
Would like to be able to select all text in log with Cmd-A on Mac. …
10:08 AM Ticket #193 ("save" format keyword gives traceback) created by Elaine Meng
for example, either the following or the following plus the "image" …

Nov 23, 2015:

5:40 PM Ticket #189 (Mail to ChimeraX-bugs bounced) closed by Greg Couch
fixed: changed chimera2 alias on cgl to be chimerax. changed chimera2 alias …
4:57 PM Ticket #191 ("alias" command has problems) closed by Greg Couch
fixed: (c) was a side-effect of (b). (a) is now fixed too. Bug was with …
3:26 PM Ticket #192 (command file should tolerate blank lines) created by Elaine Meng
It is useful to allow blank lines in command files, for readability …
3:18 PM Ticket #191 ("alias" command has problems) created by Elaine Meng
I don't know if these are all connected or separate problems, so …
3:12 PM Ticket #190 (mousemode no longer accepts function "none") closed by Tom Goddard
fixed: Fixed.
2:58 PM Ticket #190 (mousemode no longer accepts function "none") created by Elaine Meng
Now when I try to set some button as none I get an error message, for …
2:16 PM Ticket #143 (hex color parsing kaput when code starts with number) closed by Greg Couch
fixed: The #0xff0000 example was a bug, it should have been #ff0000. So this …
12:29 PM Ticket #188 (Abbreviated command keyword matches wrong option) closed by Greg Couch
fixed: Fixed. Found the non-ordered dict and replaced it with an OrderedDict.
12:25 PM Ticket #189 (Mail to ChimeraX-bugs bounced) created by Tom Goddard
From: Mail Delivery Subsystem <MAILER-DAEMON@…> …
11:04 AM Ticket #188 (Abbreviated command keyword matches wrong option) created by Tom Goddard
I get that "sel sil true" matches "set silhouetteWidth true" (which …

Nov 20, 2015:

3:13 PM WikiStart edited by Tom Goddard
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1:12 PM Hierarchy created by Tom Goddard
12:22 PM WikiStart edited by Tom Goddard
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12:20 PM WikiStart edited by Tom Goddard
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Nov 19, 2015:

3:35 PM 2015-11-19 edited by Conrad Huang
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3:10 PM 2015-11-19 edited by Conrad Huang
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3:08 PM 2015-11-19 edited by Conrad Huang
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2:28 PM 2015-11-19 created by Conrad Huang

Nov 18, 2015:

11:26 AM Ticket #187 (oculus doesn't fail gracefully on Linux) closed by Tom Goddard
fixed: Checked in a fix, but I don't have a linux system to test on.

Nov 17, 2015:

5:52 PM Ticket #187 (oculus doesn't fail gracefully on Linux) created by Greg Couch
Command: oculus on […]
3:18 PM Ticket #185 ("test" command hangs) closed by Tom Goddard
fixed: Fixed. Not sure exactly how. Fixed 5 bugs in running test and that …
2:48 PM Ticket #186 (Can't save jpeg images) created by Tom Goddard
Apparently our Pillow 3.0 does not have jpeg support. open 1a0m save …
2:03 PM Ticket #185 ("test" command hangs) created by pett
The test command hangs in "wait" as it tries to record a movie. Also, …

Nov 16, 2015:

11:14 PM Ticket #184 (seg vault deleting atoms) created by Greg Couch
Starting ChimeraX and executing the test program gives a segmentation …
5:02 PM Ticket #183 (Make pseudobonds end on cartoons) created by pett
Pseudobonds to backbone atoms that are hidden by cartoon end in space …
4:53 PM Ticket #182 (loooong tethers) created by pett
In 1www there are tethers that are distractingly long. For example …
1:54 PM Commands edited by Scooter Morris
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1:53 PM EarlyReleaseRequirements edited by Scooter Morris
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1:47 PM WikiStart edited by Scooter Morris
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10:43 AM DeveloperMeetings edited by Scooter Morris
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10:42 AM 2015-11-16 created by Scooter Morris

Nov 12, 2015:

3:42 PM WikiStart edited by Tom Goddard
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3:09 PM DeveloperMeetings edited by Conrad Huang
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3:07 PM DeveloperMeetings edited by Conrad Huang
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3:07 PM 2015-11-12 created by Conrad Huang

Nov 10, 2015:

3:56 PM Ticket #103 (Atomspec specifying one model in hierarchy) closed by Tom Goddard
fixed: Conrad's fixed atomspec parsing worked correctly. It was another bug …
12:09 PM Ticket #181 ("color byhet" dies on molecular surface) closed by Tom Goddard
fixed: Fixed. Error happened when coloring a surface per-atom using some but …
11:51 AM Ticket #103 (Atomspec specifying one model in hierarchy) reopened by Elaine Meng
I'm afraid this is not fixed. For example, open 4hhb surf ligand …
10:22 AM Needed Command Functionality edited by Elaine Meng
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10:18 AM Ticket #181 ("color byhet" dies on molecular surface) created by Elaine Meng
For example, open 1gcn disp color byhet (OK so far....) surf color …

Nov 9, 2015:

7:31 PM WikiStart edited by Tom Goddard
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7:30 PM WikiStart edited by Tom Goddard
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7:27 PM WikiStart edited by Tom Goddard
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7:27 PM WikiStart edited by Tom Goddard
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7:26 PM WikiStart edited by Tom Goddard
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4:39 PM Needed Command Functionality edited by Elaine Meng
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Nov 6, 2015:

3:20 PM Needed Command Functionality edited by Elaine Meng
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3:08 PM Needed Command Functionality edited by Elaine Meng
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3:01 PM Needed Command Functionality edited by Elaine Meng
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1:51 PM Needed Command Functionality edited by Elaine Meng
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1:49 PM Needed Command Functionality edited by Elaine Meng
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12:57 PM Needed Command Functionality edited by Elaine Meng
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11:13 AM Ticket #179 (cartoon hides too many atoms of nucleic acids) closed by pett
fixed: Okay, with the revamped is_backbone functionality, Chimera 2 hides the …
10:02 AM Ticket #180 (Side View eye position does not move with drag) created by Elaine Meng
Currently, dragging the square in the Side View tool does not move the …

Nov 5, 2015:

5:14 PM 2015-11-05 edited by Tom Ferrin
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4:51 PM DeveloperMeetings edited by Tom Ferrin
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4:51 PM 2015-11-05 created by Tom Ferrin
9:39 AM Needed Command Functionality edited by Elaine Meng
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8:44 AM Needed Command Functionality edited by Elaine Meng
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Nov 4, 2015:

12:11 PM WikiStart edited by Tom Goddard
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11:24 AM Needed Command Functionality edited by pett
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11:21 AM Needed Command Functionality edited by pett
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Nov 3, 2015:

3:45 PM Ticket #135 (Main window does not have focus on start-up) closed by pett
fixed: Apparently I mistakenly closed #138 when I meant to close this. Fixed …
3:07 PM Ticket #179 (cartoon hides too many atoms of nucleic acids) created by Elaine Meng
Maybe the default behavior of cartoon should be to not hide any atoms …
1:43 PM Ticket #178 (Error selecting an atom with the mouse) closed by pett
fixed
1:38 PM Needed Command Functionality edited by Elaine Meng
(diff)
1:25 PM Needed Command Functionality edited by Elaine Meng
(diff)
12:39 PM Ticket #138 (Command-line does not receive ctrl-A, ctrl-E ... when graphics pane ...) reopened by Tom Goddard
This bug has returned.
12:36 PM Needed Command Functionality edited by Elaine Meng
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12:19 PM Ticket #178 (Error selecting an atom with the mouse) created by Tom Goddard
Traceback (most recent call last): File …
11:32 AM Needed Command Functionality edited by Elaine Meng
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11:31 AM Needed Command Functionality edited by Elaine Meng
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10:18 AM Ticket #177 (Ribbon end-cap shows striped marks) created by Tom Goddard
The ribbon end-cap of 1a0m chain A, residue 2 shows striped marks as …

Nov 2, 2015:

12:44 PM Ticket #176 (Make silhouette edges fade with depth) created by Tom Goddard
Begin forwarded message: From: Oliver Clarke Subject: [Chimera-users] …
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